The  8th GEO European Projects Workshop (GEPW-8) took place in Athens, Greece, on 12 and 13 June, hosted by the Greek GEO Office - National Observatory of Athens and co-organized by the Mariolopoulos-Kanaginis Foundation for the Environmental Sciences.

The event was intended to bring all those interested in and actively contributing to the Global Earth Observations System of Systems (GEOSS) from all over Europe together, in order to present their work and discuss how Europe can contribute to this international effort, especially in the wake of the launch of the new EU Framework Programme for Research, Horizon 2020, and renewal of the mandate of GEO for another 10 years through the endorsement of the 2014 Geneva Declaration.

Oral presentations, a book of abstracts and the photos from the event are now uploaded and available for download on the events website.

The August 2014 updates of FishBase are now available online!
See: www.fishbase.us, www.fishbase.ca, www.fishbase.sa 

FishBase stats to date: (32900 Species, 303000 Common names, 54800 Pictures, 51400 References, 2150 Collaborators, 800000 Visits/Month)

Thanks for your continuous patronage and support!

An EU-BON Workshop focusing on the DINA system - "Alpha version of mobilization system – the DINA-system MS141" - was hosted the 16. to 18. September 2014 by the Swedish Museum of Natural History in Stockholm.

Target group: programmers, developers and system engineers, but the workshop was open to anybody who was interested to learn more about the DINA-system.

Content included:

• Presentations from all DINA-partners
• APIs, service oriented architecture and road map for distributed development, guidelines and principles on how to build a module and join the DINA-system
• Case studies
• Delivery options: creating installations from hosted environment, virtual machines down to source code

For program, particpants list, presentations etc please vist the DINA wiki

An innovative workflow reveals new research potential of the Barcode of Life Data Systems (BOLD). A recently published article in the Biodiversity Data Journal (BDJ) used specimen records downloaded from BOLD in tabular format and imported these into a human-readable text developed in manuscript within the Pensoft Writting Tool (PWT). Data were used to study the species distributions of ten Nearctic species of braconid wasps from the Microgastrinae subfamily.

BOLD is originally designed to support the generation and application of DNA barcode data. However, the repository also holds unexplored treasures of additional data that provide unique potential for many other research uses.

Currently almost 4 million sequences (over 3.4 million of them DNA barcodes) are stored in BOLD, including coverage for more than 143K animal species, 53K plant species, and 16K fungi and other species, and this impressive storage of information is continuing to grow every day.

A team of researchers, led by Dr Jose Fernandez-Triana from the University of Guelph, Canada, have now explored how the unique amount of data stored on the BOLD platform can be utilised for new research purposes. Choosing tiny parasitic wasps for their case study they selected a sample of 630 specimens and 10 North American species. Data stored on BOLD were then used to uncover a significant number of new records of locality, provinces, territories and states.

The research was then secured a fast publication via BDJ, a community peer-reviewed, open-access, comprehensive online platform, designed to accelerate publishing, dissemination and sharing of biodiversity-related data of any kind.

"Import of structured data into human-readable text is important but it does not represent the whole story. More importantly, the data can be downloaded straight from the article text by anyone for further re-use, or be automatically exported to data aggregators, such as the Global Biodiversity Information Facility (GBIF). In this way, data platforms could get more peer-reviewed content from scholarly publications and scientists will be properly credited for their efforts" said Prof. Lyubomir Penev, founder of Pensoft Publishers.

Original Source:

Fernandez-Triana J, Penev L, Ratnasingham S, Smith M, Sones J, Telfer A, deWaard J, Hebert P (2014) Streamlining the use of BOLD specimen data to record species distributions: a case study with ten Nearctic species of Microgastrinae (Hymenoptera: Braconidae). Biodiversity Data Journal 2: e4153. doi: 10.3897/BDJ.2.e4153

Additional information:

The workflow is part of the Data Publishing Toolkit elaborated within the EU FP7 funded project EU BON (Grant agreement No 308454).

Data sharing tools developed by an EU project are helping scientists worldwide understand more about the planet’s millions of species. A new article published on CORDIS and DAE looks into the benefits of the FP7 funded project VIBRANT.

The Royal Museum for Central Africa (RMCA) in Tervuren (Belgium) is part of the FishBase Consortium and responsible for the information on the fresh- and brackish water fishes of Africa. Through an agreement with the Belgian Development Cooperation and as part of the FishBase program, the RMCA has five grants available for a 3-month training program in the use of FishBase and the taxonomy of African fishes.

The training includes three subsets:

1. A detailed explanation of FishBase in all its aspects;
2. A training in the taxonomy of African fishes;
3. A case study based on data from FishBase or on taxa for which taxonomic problems have been encountered.

This course has been offered annually since 2005 and is held at the Royal Museum for Central Africa (Leuvensesteenweg 13, B-3080 Tervuren, Belgium). To apply for traineeship and for more information, please click HERE or HERE. Please note that for 2015, this course will be given in English only.

Questions? Contact Dimitri Geelhand de Merxem (dimitri.geelhand@africamuseum.be).

The 2nd EU BON training on data sharing tools will take place side by side to CETAF/EU BON informatics workshops (see full program and logistic details here). The event will be organised by UEF and Digitarium, EU BON consortium member and work package leader (WP2), in collaboration with CETAF ISTC and other EU BON work packages.

Next topics will be covered:

• Introduction to GEOSS, GEO BON, EU BON (Hannu Saarenmaa)
• Information architecture of EU BON (Antonio Garcia)
• Data standards, Darwin Core and extensions for sample-based quantitative data (Éamonn Ó Tuama)
• Demonstration of GBIF/EU BON IPT for monitoring networks (Larissa Smirnova and Franck Theeten)
• Practical exercise with sample dataset (Larissa Smirnova and Franck Theeten)
• Practical exercise with own data (all trainees)

The workshop will include lectures and hands-on work, so participants are required to bring their own laptops. We will provide information and instructions on software installations. If the participants want to install IPT tool themselves, they can read and learn how to de it here. For the practical exercises it’s recommended to bring  own data (taxonomic, monitoring).

Place and date: Joensuu, Finland, 19 March 2015

Venue: Joensuu Science Park, Digitarium and the Conference Facility "Network Oasis"

To register, please fill in the registration form

Find the event in our calendar here.

The second WP6 and 7 workshop was organised by CNRS and took place from 16 to 18 of February in Aix-en-Provence, France. During this meeting, partners brainstormed on possible cross work package papers, products and tasks. Partner’s enthusiasm for the ongoing work and possible impact of EU BON outputs fuelled energetic discussions.

Participants at the workshop. Credit: Florian Wetzel

Topics on the agenda include:

The possibilities of visualisations like Aquamaps and Fishbase to provide information for Marine policy targets or for capacity building on marine biodiversity information. We were very happy to have Sandrine Vaz from IFREMER, Montpellier joining us as an expert on marine data and its policy context.

For the EU BON business plan, the next steps were defined for its development, part of which Pan Xingliang will explore in his masters project. One of the steps will include a strategy meeting with other initiatives and European projects that face the same challenge of ensuring life of their products and networks of knowledge after the project end date.

The objective of the third stakeholder round table was further defined based on lessons learned from previous stakeholder round tables and identifying the information needs from the data portal for EU BON from our EU BON test case study regions.

FishBase on the US and CA servers (www.fishbase.us and www.fishbase.us) are now updated to version February 2015.

The domain www.sealifebase.org is now served with load balancing between the two mirrors below.

- sealifebase.ca (UBC, Vancouver)
- sealifebase.de (Geomar, Kiel)

You will see which mirror is serving at the bottom left corner of the page.

The DE domain is recently acquired.

A new aticle published in Ecology Letters  looks into the indirect interactions among tropical tree species through shared rodent seed predators. The reasearch is part of the work of EU BON postdoc Carol X. Garzon-Lopez.

Abstract: The coexistence of numerous tree species in tropical forests is commonly explained by negative dependence of recruitment on the conspecific seed and tree density due to specialist natural enemies that attack seeds and seedlings (‘Janzen–Connell’ effects). Less known is whether guilds of shared seed predators can induce a negative dependence of recruitment on the density of different species of the same plant functional group. We studied 54 plots in tropical forest on Barro Colorado Island, Panama, with contrasting mature tree densities of three coexisting large seeded tree species with shared seed predators. Levels of seed predation were far better explained by incorporating seed densities of all three focal species than by conspecific seed density alone. Both positive and negative density dependencies were observed for different species combinations. Thus, indirect interactions via shared seed predators can either promote or reduce the coexistence of different plant functional groups in tropical forest.

Carol X. Garzon-Lopez et. al. (2015) Indirect interactions among tropical tree species through shared rodent seed predators: a novel mechanism of tree species coexistence. Ecology Letters. doi: 10.1111/ele.12452

FishBase on the US and CA servers (www.fishbase.us and www.fishbase.ca) are now updated to version April 2015.

Sustainable governance of our biological resources demands reliable scientific knowledge to be accessible and applicable to the needs of society. To achieve this, the EU BON project aims to develop a European Biodiversity Observation Network that facilitates open access to biodiversity data of relevance to environmental policy, and to develop innovative platforms for sharing and conveying this information through visually effective and policy-relevant media.

As part of this endeavour, EU BON partners FishBase Information and Research Group (FIN), the Museum für Naturkunde Berlin (MfN), and the UNEP World Conservation Monitoring Centre collaborated to produce an infographic titled ‘Climate Change & Biodiversity: What may happen to bony fishes in the North Sea?’. This infographic explains the economic and ecological importance of bony fishes in the context of the North Sea. It also visualises potential changes to species diversity and composition over time, using habitat suitability and climate change predictions. These changes have been projected to 2100 based on modelled environmental conditions under the Intergovernmental Panel on Climate Change’s A2 emissions scenarios. The projections have direct policy relevance to Aichi Biodiversity Target 10 of the Convention on Biological Diversity, which seeks to understand trends in climatic impacts on community composition in ecosystems, and to thereby minimize these impacts.

The infographic was published on the 1^st June 2015 on page 26 of The Parliament Magazine’s ‘Green Week’ edition (Issue 413), which is distributed to all members of European Parliament, the European Commission, Presidency Office, Party political groups, and various other EU institutions, with over 50,000 readers worldwide. 

The 9th GEO European Projects Workshop is now taking place on 15 and 16 June 2015 in Copenhagen, co-organised by the Danish Meteorological Institute, the European Commission and the European Environment Agency.

While registration is now closed, due to demand the event will be recorded and streamed live on http://stream.dvc.dk/9thgeo/ for those who are interested to follow.

The objective of the GEO European Projects Workshop is to bring together European players interested in and actively contributing to the Global Earth Observations System of Systems (GEOSS). The aim is to enable participants to present their work and discuss how Europe can contribute to this international effort. Its timing has been set to maximise early insight and awareness of the new Implementation plan for the next decade of GEO as well as input to and awareness of Horizon 2020 work programme for 2016 and 2017.

Building on the experience from previous GEO European Projects Workshops, it is intended to continue working towards greater involvement of the European private sector, especially SMEs, in GEO.  The workshop will also focus on user engagement, and the priorities for future flagship initiatives, foreseen to be strengthened in the next phase of GEO, in order to fulfil GEO's ambition to provide information for decision making.

More information available on the official event page: http://geo.pbe.eionet.europa.eu/

The 9th GEO European Projects Workshop took place on 15 and 16 June 2015, in Copenhagen, Denmark. A special session dedicated to biodiversity and ecosystems was held as a part of the meeting, where EU BON and other topic relevant projects were presented.

The session was started by Gary Geller with an introduction and overview. Particularly the importance of the long-term sustainability of the projects and the linkages to the overall aims of GEO were stressed, as well as the opportunity of the session to find further synergies among the GEO-related projects.

Participants at the biodiversity and ecosystems sessions during the 9th GEO European Projects Workshop; Credit: Florian Wetzel

EU BON was presented at the meeting by the project coordinator Christoph Häuser, who outlined the core elements for an integrated biodiversity information system. There is the challenge to provide a sound framework to overcome the fragmentation of available biodiversity information to obtain better information for political decision making.  EU BON with its 31 partners tackles this challenge and its main objective is to serve as a European contribution to GEO BON.

Other projects presented during the session were EU H2020 projects ECOPOTENTIAL and GLOBIS‑B, both already in the list of associated partners of EU BON.  The third H2020 project presented here was SWOS, a Satellite-based Wetland Observation Service.

One of the major outcomes of the session was the agreement that further follow-ups of the discussions are needed and that the projects should have further exchange among each other.

It has been recognized that issues regarding the sustainability and interoperability of data collected by citizens hinder the re-usability and integration of these data across borders. The European Commission’s Joint Research Centre (JRC), is following up on these findings with a detailed study of interoperability arrangements, hosting and data management practices of Citizen Science projects. These activities include a survey designed to capture the state of play with regard to data management practices on the local, national and continental scales. The questions are especially inspired by the recently proposed data management principles of the Group on Earth Observations and those of the Belmont Forum.

Beyond the pure stocktaking and awareness raising, the results should establish a base line for prioritizing follow-up activities and measuring progress. The results will also inform the discussion on the potential roles of the European Commission – and especially the JRC – in Citizen Science.

After discussions with members of the European Citizen Science Association (ECSA) and the international Citizen Science Association (CSA), it was decided to open the scope of the questionnaire to the international community, so that non-EU and globally acting organizations could also benefit from the outcomes.

The survey will be open until 31 August 2015, and the results of the subsequent analysis will be available by the end of September.  We invite all those involved in Citizen Science projects to take the survey in order to provide us with invaluable information and insight into Citizen Science projects and best practice.

Take the Survey! >> https://ec.europa.eu/eusurvey/runner/CSDataManagement

An  EU BON workshop took place on 20-23 July in Manaus, Brasil for a targeted group of representatives of the different EU BON WPs or task forces. The workshop was attended by European representatives of EU BON and INPA to discuss potential options to further the integration between European teams and the Brazilian team.

Among topics discussed at the workshop were issues of designing and running biodiversity monitoring observatories (i.e. optimization and guidelines for planning biodiversity monitoring); analyses of biodiversity data to be addressed for assessing changes and patterns; and linkage of (meta-) data to EU BON portal.

  
Images from the workshop; Credit: William Magnusson (INPA) & Israel Peer (GlueCAD)

Being hosted in Manaus, this workshop also looked into facilitationg the integration of Brazilian and European expertise, for instance by updating about the progress made by Brazil in starting participatory resource monitoring in Brazilian National parks and the development of databases to integrate this information. 

Besides presentation and discussions, INPA organized an excursion to show their log-term biodiversity monitoring field sites (RAPELD) and to explain the rationale and methodology behind their design and organization. 

      
Images from the excursion; Credit: Charlie Marsh 

The Royal Museum for Central Africa (RMCA) in Tervuren (Belgium) is part of the FishBase Consortium and responsible for the information on the fresh- and brackish water fishes of Africa in the FishBase database. Through an agreement with the Belgian Development Cooperation and as part of the FishBase program, the RMCA has five (5) grants available for a 3-month training program in the use of FishBase and the taxonomy of African fishes.

The training will have three subsets:

1. A detailed explanation of FishBase in all its aspects;
2. A training in the taxonomy of African fishes;
3. A case study based on data from FishBase or on taxa for which taxonomic problems have been encountered.

This course has been offered annually since 2005 and is held at the Royal Museum for Central Africa (Leuvensesteenweg 13, B-3080 Tervuren, Belgium). For more information and to apply for this three-month training grant, see: http://fishbase.africamuseum.be or www.fishbaseforafrica.org. Please note that for 2016, this course will be given in French only.

Questions? Contact Dimitri Geelhand de Merxem (dimitri.geelhand@africamuseum.be).

October 2015 updates for both FishBase (www.fishbase.org) and SeaLifeBase (www.sealifebase.org) are now online!

From 9 to 11 November in Vienna, Austria the EU H2020 project Detecting changes in essential ecosystem and biodiversity properties – towards a Biosphere Atmosphere Change Index: BACI has organised a special workshop titled "Remote sensing applications related to land use/change" with the aim to facilitate co-design and co-production of knowledge with regard to innovative applications of remote sensing products.

EU BON project partner Duccio Rocchini was among the invited lecturers at the event. His talk titled "Like in a Rubik’s cube: Recomposing Biodiversity Information by Remote Sensing Data" introduced some experience from EU BON.

The overarching objective of BACI is to tap into the unrealized potential of existing and scheduled space-borne Earth observation data streams to detect changes in ecosystem functioning and services that have repercussions for essential biodiversity variables, land use potentials, and land-atmosphere interactions.

A joint WP2/3/4/6/7 workshop took place on 23-24 November 2015 in Cambridge, UK. The overall goal of the workshop was to identify synergies and overlapping objectives across WP3/4 and 6/7 and beyond and to thereby identify applications of EU BON’s tools to decision-making, including at the policy level.

The idea for this small, focused workshop emerged as a result of the popularity and outreach achieved by the Aquamaps North-Sea fisheries infographic, developed under WP6. This infographic has demonstrated how the AquaMaps modelling tool can help answer a clear policy or question relevant to decision-making.

Under EU BON, WP3 and WP4 have developed some powerful tools, and more are in the making. The next challenge for EU BON is to use these tools to address policy-relevant issues/questions and to link EU-BON’s modelling capacity to policy needs. Producing cutting-edge innovations is important, but their implementation for policy and decision-making needs is what has real impact.

This is what the Cambridge workshop was about - bringing different players together to identify the right ways to make EU BON innovation policy relevant.

Outcomes of the meeting:

• An improved vision of how to ‘market’ EU BON’s products for end-users;

• A better understanding of the end-users and the barriers that they face in accessing and using biodiversity data tools; and

• Improved collaboration between EU BON Work Packages and a coherent vision for future synergies.

Are you in Eastern Europe and actively involved in monitoring and managing biodiversity data? Then the EU BON "Biodiversity data sharing and data publishing workshop" might just be the thing for you.

The event will take place on 22-23 March 2016 in Sofia, Bulgaria with focus on publishing of biodiversity data, in particular species occurrences, sample-based and citizen science data. The training will include a practical session during which participants will be assisted by experienced trainers from the EU BON project. To register and for more information, click here.

The sessions on data sharing will cover introductory overview of key concepts, demonstration and practical exercise using the GBIF Integrated Publishing Toolkit (IPT). The Global Biodiversity Information Facility (GBIF) is the world's largest initiative for enabling free access to biodiversity data via internet.

Special attention will be paid to data paper publishing led by specialists from Pensoft Publishers - a company well known among biodiversity scientists worldwide for technologically cutting-edge open access journals, such as: Research Ideas and Outcomes, ZooKeys, Biodiversity Data Journal, Nature Conservation, and a strong advocate of data publishing. Registration of data in GEO registry system will be also addressed during the workshop.

The following topics will be covered (detailed program will follow):

• The data publishing landscape, gaps and mobilization efforts
• Demonstration and practical session on data publishing using the GBIF IPT: step-by-step demo will show in detail (and in practice) how to publish a dataset using IPT.
• The Data Publishing Toolkit at EU BON: Automated creation of data papers, data and text integrated publishing via the ARPHA Publishing Platform
• Citizen Science gateway and demo of PlutoF Citizen Science module
• GoldenGate Imagine tool and copyright issues
• Registration of data in the GEO Registry System

Context and background: 

Addressing global problems, such as biodiversity loss and impacts of climate change requires open access to data. This was concluded by world leaders at Johannesburg Summit in 2002 when they established the Group for Earth Observations (GEO). EU BON (Building the European Biodiversity Observation Network) seeks to enhance biodiversity data availability and integration, and is the European contribution to the GEO Biodiversity Observation Network.

All biodiversity databases need to be integrated in GEO. Therefore, EU BON undertakes capacity building of biodiversity communities (e.g. researchers, citizen scientists, non-governmental organisations) that are involved in collecting and disseminating biodiversity information, including monitoring initiatives.

To register and for more information, click here.

From 26 to 28 January 2016, EU BON hosted its first Biodiversity Portal Hackathon in Seville, Spain. The event marked an important milestone for the project, paving the way towards one of the most important EU BON products - the European Biodiversity Portal.

It is a well known fact that current biodiversity observation systems and environmental datasets are unbalanced in coverage and not well integrated. This brings the need of a new system which will facilitate access to such knowledge and will effectively improve the work in the field of biodiversity observation in general.

Participants at the Biodiversity Portal Hackathon in Seville, Spain; Credit: Pensoft

The ultimate goal of EU BON is to create an European Biodiversity Portal which will collect and present biodiversity data from across Europe in a consistent and re-usable way. The portal will then feed into a global equivalent developed by the Group on Earth Observation’s Biodiversity Observation Network (GEO BON).

But what are the benefits from and what are the challenges in front of such an ambitious project?

Following the Biodiversity Data Portal hackathon, Dr. Hannu Saarenmaa, leader of WP 2 Data integration and interoperability, and Juan José Negro answered these questions in a video interview: 

Engagement with relevant political authorities and other stakeholders is of crucial importance for a research project, making sure its objectives are in tune with the real-world problems and its results provide adapted solutions. Now EU BON shares the outcomes, lessons learned and conclusions from a series of three roundtable meetings designed to identify stakeholder needs and promote collaboration between science and policy.

The collection of EU BON stakeholder roundtable reports provides a summarized overview of shared experiences gained in the three different workshops that were organized from 2013-2016. With more than 100 participants from over 20 countries altogether, the roundtable reports provide insights and exchange of ideas on highly relevant issues concerning policy, citizen science and local/regional stakeholders and its networks.

Simplified workflow from data mobilization via processing to stakeholders from the practice; Credit: Vohland et al.

The roundtables seek to build up a stakeholder dialogue with exemplary sector-specific user communities to incorporate feedback loops for the products of EU BON, as well as to develop improvements of existing biodiversity data workflows. Being published via the innovative Research Ideas & Outcomes (RIO) journal conclusions, derived knowledge and results are now made available for other projects and the wider community to ensure their re-use.

The three roundtable papers report on conclusion on highly relevant issues related to biodiversity information and its open-access and availability, data workflows and integration of citizen science as well as science-policy interfaces.

"In each of the three detailed reports of the roundtables we outline its aims, intentions, as well as results and recommendations, that were drafted based on the roundtable discussions, world café sessions and working groups. Such project results are now published for the first time in the new series of EU BON results, featured in RIO, providing a unique new medium to share experiences, outcomes and conclusions," comments Dr. Katrin Vohland, Museum für Naturkunde, Berlin.

"The three reports were published as workshop report provided by the Research Ideas & Outcomes (RIO) journal. This allows readers to publish, distribute and computationally analyse myriads of workshop reports that otherwise often get forgotten or just lost," comments Prof. Lyubomir Penev, co-founder and publisher of RIO.

Original Sources:

Rationale of the roundtables

Wetzel F, Hoffmann A, Häuser C, Vohland K (2016) 1st EU BON Stakeholder Roundtable (Brussels, Belgium): Biodiversity and Requirements for Policy. Research Ideas and Outcomes 2: e8600. doi: 10.3897/rio.2.e8600

Vohland K, Häuser C, Regan E, Hoffmann A, Wetzel F (2016) 2nd EU BON Stakeholder Roundtable (Berlin, Germany): How can a European biodiversity network support citizen science? Research Ideas and Outcomes 2: e8616. doi: 10.3897/rio.2.e8616

Vohland K, Hoffmann A, Underwood E, Weatherdon L, Bonet F, Häuser C, Wetzel F (2016) 3rd EU BON Stakeholder Roundtable (Granada, Spain): Biodiversity data workflow from data mobilization to practice. Research Ideas and Outcomes 2: e8622. doi: 10.3897/rio.2.e8622

General synthesis and lessons learnt from the three EU BON stakeholder roundtables

Open access to biodiversity is key for addressing pertinent ecological issues such as biodiversity loss and impacts of climate change. On 22 & 23 March 2016, experts from EU BON met with scientists, policy makers and practitioners from across Europe to discuss issues of biodiversity data sharing, curation and publishing.

The workshop, which took place in Sofia, Bulgaria, introduced participants to key concepts, demonstration and practical exercise in biodiversity data sharing using the GBIF Integrated Publishing Toolkit (IPT). Practical training sessions led by Larissa Smirnova from the Royal Museum for Central Africa (Belgium) and Kyle Braak from GBIF demonstrated the integration and management of datasets in GBIF. A step-by-step demo and practical session on how to publish a data was also featured in the workshop.

Participants at the EU BON data sharing & data publishing workshop in Sofia; Credit: Pensoft

Special attention was paid to innovative data publishing practices in a session led by the local hosts Pensoft Publishers who introduced their ARPHA publishing platform, as well as its new journal Research Ideas & Outcomes (RIO), which publishes unconventional output types across the research cycle, including data and software descriptions, workflows, methods and many more.

PlutoF demonstrated its citizen science gateway and  demonstrated how the citizen science data can be managed using the CS module. Plazi also presented their GoldenGate Imagine tool, optimized for marking up, enhancing, and extracting text and data from PDF files.

    
Sessions at the at the EU BON data sharing & data publishing workshop in Sofia; Credit: Pensoft

Registration for the "10th GEO European Projects Workshop" is now open until 2 May 2016. The event this year will take place in Berlin, Germany, spanning over three days from 31 May to 2 June 2016.

To register and learn more, please click here.

An EU BON-Team  from the Museum für Naturkunde  will also organize a Break Out Session at the event. The dedicated session #11 is called "Challenges for Biodiversity and Ecosystem Observation for the Next Ten Years", where several EU-projects will present their current and future activities with regards to biodiversity and ecosystem data, knowledge and contributions to the GEO work. This will be followed by interactive World Cafés:

1. World Café desk I: EEA and policy – data/model/portal needs.
2. World Café desk II: Follow-up joint products of GEO EU Biodiversity projects.
3. World Café desk III: Strengthening the in-situ approach in GEO by biodiversity and ecosystem-related projects.
4. World Café desk IV: Connecting with other GEO Societal Benefit Areas (SBAs), e.g. Agriculture, Health.

Due to the exponential growth of biodiversity information in recent years, the questions of how to mobilize such vast amounts of data has become more tangible than ever. Best practices for data sharing, data publishing, and involvement of scientific and citizen communities in data generation are the main topic of a recent report by the EU FP7 project Building the European Biodiversity Observation Network (EU BON), published in the innovative Research Ideas & Outcomes (RIO) journal.

The report "Data sharing tools for Biodiversity Observation Networks" provides conceptual and practical advice for implementation of the available data sharing and data publishing tools. A detailed description of tools, their pros and cons, is followed by recommendations on their deployment and enhancement to guide biodiversity data managers in their choices.

"We believe publishing this report in RIO makes a lot of sense given the journal's innovative concept of publishing unconventional research outcomes such as project reports. This feature provides projects like EU BON with the chance to showcase their results effectively and timely. The report provides a useful practical guide for biodiversity data managers and RIO gives the project an opportunity to share findings with anyone who will make use of such information", explains Prof. Lyubomir Penev, Managing Director of Pensoft and partner in EU BON.

The new report is the second EU BON contribution featured in a dedicated project outcomes collection in RIO. Together with the data policy recommendations it provides a comprehensive set of resources for the use of biodiversity data managers and users.

"We did our biodiversity data sharing tools comparison from the perspective of the needs of the biodiversity observation community with an eye on the development of a unified user interface to this data - the European Biodiversity Portal (EBP)", add the authors.

The scientists have identified two main challenges standing in front of the biodiversity data community. On the one hand, there is a variety of tools but none can as stand alone, satisfy all the requirements of the wide variety of data providers. On the other hand, gaps in data coverage and quality demand more effort in data mobilization.

"For the time being a combination of tools combined in a new work-flow, makes the most sense for EU BON to mobilize biodiversity data," comment the report authors on their findings. "There is more research to be done and tools to be developed, but for the future there is one firm conclusion and it is that the choice of tools should be defined by the needs of those observing biodiversity - the end user community in the broadest sense - from volunteer scientists to decision makers."

Original Source:

Smirnova L, Mergen P, Groom Q, De Wever A, Penev L, Stoev P, Pe'er I, Runnel V, Camacho A, Vincent T, Agosti D, Arvanitidis C, Bonet F, Saarenmaa H (2016) Data sharing tools adopted by the European Biodiversity Observation Network Project. Research Ideas and Outcomes 2: e9390. doi: 10.3897/rio.2.e9390

The 10th GEO European Projects Workshop took place from 31 May until 2 June 2016 in Berlin, Germany. Representatives from science, business and public administration met in Berlin to discuss how European Earth observation initiatives can contribute to the Global Earth Observations System of Systems (GEOSS).

The workshop, was jointly organised by the European Commission, the Federal Ministry of Transport and Digital Infrastructure of Germany, and the Museum für Naturkunde - Leibniz Institute for Evolution and Biodiversity Science. A  wide range of events gave projects the opportunity to showcase their work and findings and discuss the future of earth observations. The event also featured a series of world cafés where, in a more informal and relaxed environment, experts could discuss topics focused on different aspects and challenges for biodiversity and ecosystem observation for the next ten years.

Group photo of the participants at the 10th GEO European Projects Workshop; Credit: H. Götz

During the meeting EU BON was presented at a specialized session focusing on the "Challenges for Biodiversity and Ecosystem Observation for the Next Ten Years". EU BON’s co-ordinator Dr. Christoph Häuser alongside project partner and WP2 leader Dr. Hannu Saarenmaa presented the latest project developments and results.

#GEPW16 @EUBON1 Christoph Häuser: gaps in biodiversity data in Europe pic.twitter.com/4j02nlUUxJ

— ENEON (@ENEONetwork) June 2, 2016

Special attention was paid to presenting and explaining the functionalities of the recently launched beta version of the EU BON European Biodiversity Portal, which aims to provide a substantial part of GEO BON’s Global Portal.

  


Clockwise from top left: Dr. Christoph Häuser presenting EU BON; Audience of the 10th GEO Projects Workshop; Panel at the Biodiversity and Ecosystem session; Credits: Florian Wetzel, Hwaja Götz and Anke Hoffmann.

For further information see:

Presentations

General Programme

Find out more resources on the official event webpage.

The EU BON workshop "Biodiversity research for and by citizens in Eastern Europe: tools, information services and public engagement" was organized to present the EU BON citizen science gateway, share accomplishments of the project, promote products, raise and discuss challenges of citizen science and facilitate networking between countries, especially eastern and central European countries.

There were 33 participants from Baltic countries and Finland and EU BON partners from Norway, Spain, Israel and Brussels. First day was showcasing the citizen science initiatives in Estonia, following best practice examples from EU BON consortium. During the second day the participants got a chance to learn the tools and methods for citizen science data management by ECSA and EU BON. This was followed by world cafe style discussion about the needs of citizen science initiatives and Pan-European citizen science gateway. One of the important conclusions for Baltic countries is that there is a need for stronger collaboration and supportive infrastructure to make citizen science more effective and also deliver accessible data to research community.

Some workshop participants also took part of Tartu Mini-BioBlitz on 29th June, first BioBlitz in Estonia. BioBlitz participants observed 239 species of animals, plants and fungi .

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Workshop agenda

Read a first hand report form the workshop in the two great blog posts by Egle Marija Ramanauskaite (a workshop participant from Lithuania):

http://seplute.tumblr.com/post/146841955105/citsci-overtakes-the-baltics-citizen-science

http://seplute.tumblr.com/post/146844410470/citizen-science-workshop-in-tartu-recap-of-day-2

The planetary boundaries framework attempts to set limits for biodiversity loss within which ecological function is relatively unaffected. In a recent article in Science Newbold et al. present a quantitative global analysis of the extent to which the proposed planetary boundary has been crossed. 

Abstract: 

Land use and related pressures have reduced local terrestrial biodiversity, but it is unclear how the magnitude of change relates to the recently proposed planetary boundary ("safe limit"). We estimate that land use and related pressures have already reduced local biodiversity intactness—the average proportion of natural biodiversity remaining in local ecosystems—beyond its recently proposed planetary boundary across 58.1% of the world’s land surface, where 71.4% of the human population live. Biodiversity intactness within most biomes (especially grassland biomes), most biodiversity hotspots, and even some wilderness areas is inferred to be beyond the boundary. Such widespread transgression of safe limits suggests that biodiversity loss, if unchecked, will undermine efforts toward long-term sustainable development.

The study is available at http://dx.doi/10.1126/science.aaf2201

The EU is a party to the Nagoya Protocol on Access to Genetic Resources and the Fair and Equitable Sharing of Benefits Arising from their Utilisation. The EU ABS Regulation1, which transposes into the EU legal order the compliance pillar of the Protocol, became applicable as of 12 October 2014. The principal obligations of the Regulation – i.e. Article 4 on due diligence, Article 7 on monitoring user compliance and Article 9 on checks on user compliance – will become applicable as of 12 October 2015.

In this context it is important that those who utilise genetic resources (i.e. conduct research and development on the genetic and/or biological composition of genetic resources, including through the application of biotechnology) are aware of the obligations arising from the Regulation, and that they can take the necessary measures to ensure their activities are compliant.

What's in it for you?

The EU ABS Regulation workshop aims at providing the participants with knowledge about their obligations under the EU ABS Regulation and what they practically imply for their everyday work. In the first part of the workshop, the new legal framework will be explained, providing insight into the main provisions of the EU ABS Regulation. In the second part of the workshop, participants will have a chance to put the knowledge gained into practice through interactive case studies, based on real-life examples and realistic scenarios.

The workshop should allow participants to better understand their obligations under the EU law, and to establish which steps they need to follow and which practical measures they should take when dealing with genetic resources originating from Parties to the Nagoya Protocol.

Planning and location of the workshops: 

Feel free to apply for registration to one of the following workshops:

• 18 October: Stockholm
• 17 November: Warsaw
• 21 November: Leiden
• Date to be determined: Budapest

The workshop is targeted at senior academics and experienced researchers conducting research and development on genetic resources who have an interest in gaining an essential understanding of the new legal framework in the EU, in view of the ABS Regulation becoming fully operational later this year.

Registration page: http://www.euconf.eu/abs/en/registration/index.html

While development and implementation of data publishing and sharing practices and tools have long been among the core activities of the academic publisher Pensoft, it is well-understood that as part of scholarly publishing, open data practices are also currently in transition, and hence, require a lot of collaborative and consistent efforts to establish.

Based on Pensoft's experience, and elaborated and updated during the Framework Program 7 EU BON project, a new paper published in the EU BON dedicated collection in the open science journal Research Ideas and Outcomes (RIO), outlines policies and guidelines for scholarly publishing of biodiversity and biodiversity-related data. Newly accumulated knowledge from large-scale international efforts, such as FORCE11 (Future of Research Communication and e-Scholarship), CODATA (The Committee on Data for Science and Technology), RDA (Research Data Alliance) and others, is also included in the Guidelines.

The present paper discusses some general concepts, including a definition of datasets, incentives to publish data and licences for data publishing. Furthermore, it defines and compares several routes for data publishing, namely: providing supplementary files to research articles; uploading them on specialised open data repositories, where they are linked to the research article; publishing standalone data papers; or making use of integrated narrative and data publishing through online import/download of data into/from manuscripts, such as the workflow provided by the Biodiversity Data Journal. Among the guidelines, there are also comprehensive instructions on preparation and peer review of data intended for publication.

Although currently available for journals using the developed by Pensoft journal publishing platform ARPHA, these strategies and guidelines could be of use for anyone interested in biodiversity data publishing.

Apart from paving the way for a whole new approach in data publishing, the present paper is also a fine example of science done in the open, having been published along with its two pre-submission public peer reviews. The reviews by Drs. Robert Mesibov and Florian Wetzel are both citable via their own Digital Object Identifiers (DOIs).

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Original source:

Penev L, Mietchen D, Chavan V, Hagedorn G, Smith V, Shotton D, Ó Tuama É, Senderov V, Georgiev T, Stoev P, Groom Q, Remsen D, Edmunds S (2017) Strategies and guidelines for scholarly publishing of biodiversity data. Research Ideas and Outcomes 3: e12431. https://doi.org/10.3897/rio.3.e12431

www.fishbase.ca and ​www.sealifebase.ca have been updated.

The 11th European Projects GEO Workshop took place between 19-21 June 2017, in Helsinki, Finland, bringing together European stakeholders interested in and actively contributing to the Global Earth Observations System of Systems (GEOSS).

Alongside the plenary (see presentations here), the conference featured 20 sessions looking at various aspects GEOSS, its objectives and their implementation.

Among those EU BON took part in a dedicated session titled ‘How Ecosystem and Biodiversity data and knowledge can support the GEO objectives’, alongside fellow projects and initiatives, and associated partners ECOPOTENTIAL, LTER-Europe, GLOBIS-B, EKLIPSE and ENEON.

Credit: F. Wetzel

The session aimed to inform about recent developments of relevant projects that focus on Ecosystems and Biodiversity and also outline how the generated data and knowledge can support the GEO objectives and inform relevant policies on a European and global scale.  

.@ft_wetzel explaining the @EUBON1 approach to mobilising linked and standardised data #EGW2017 #citizenscience #harmonisation #biodiversity pic.twitter.com/jJJ5jADAzG

— Scent (@SCENT_EU) June 20, 2017

EU BON, as a now completed project, opened the session by presenting its major products in particular the European Biodiversity Portal and how current and future projects can build on the outcomes achieved.

Overall, the session gave the opportunity to learn about the different approaches of selected EU-projects that address the mobilization, integration and analysis of biodiversity and ecosystem data, their current achievements and existing barriers. Here are some of the Key Messages that emerged from the session: 

• For biodiversity and ecosystem approaches, European level efforts are needed to achieve comprehensive data coverage and full open access, especially for in situ data integration.
• Existing European-level data portals and information platforms need to be sustained and considered as integration points for national and local data hubs. 
• Systematic approaches for biodiversity are needed, which means linking biotic and abiotic data and improving harmonization efforts for the whole data cycle/ workflows from data collection, analysis and dissemination for different disciplines (SBAs). 
• Essential (Biodiversity) Variables (EBVs) are a key concept / framework especially for monitoring / long-term observations that should be applied for all available biodiversity/ecosystem data fields.
• Use examples from existing projects and networks as successful blueprints for bottom-up/user-driven approaches in GEOSS that relate to knowledge and user needs at the local scale. 

The ECOPOTENTIAL H2020 project, focusing its activities on blending Earth Observations from remote sensing, field measurements, data analysis and modeling of current and future ecosystem conditions and services, is organizing this workshop in Brussels on the 10th of January 2018, from 9.00 to 17:30. 

The main objective of the workshop is to prospect the state-of-the-art of Remote Sensing as a Sentinel tool to monitor, characterize and understand the state, ongoing changes and effectiveness of conservation and management actions of natural landscapes and to facilitate an open debate among scientists and the involved Institutions. This workshop is part of the multiple events organized by the ECOPOTENTIAL Project on the week of 9th-12th of January 2018, starting on Jan 9th with the opening of the photo-exhibition with the same title, on display at the European Parliament. 

Registration: http://ves.cat/emIm

Agenda: http://www.ecopotential-project.eu/images/ecopotential/img_news/Spaced-workshop-AGENDA-Jan-10-2018.pdf

Event's website: http://www.ecopotential-project.eu/2015-08-19-15-19-05/2015-10-16-13-48-29/205-spaced-using-earth-observations-to-protect-natural-landscapes.html

The Research Infrastructures Unit of DG RTD and the infrastructure project LifeWatch invites you to a 1 and ½ day workshop : "Towards a Roadmap for Research Infrastructures on Biodiversity and Ecosystem research in Europe". The workshop will take place Brussels on 19 and 20 March 2013.
The overall objective of this workshop is to develop synergies between ESFRI research infrastructures (RI), existing research infrastructures implemented as Integrating Activities (IA), Integrated Projects (IP) and Joint Programming Initiatives (JPI) which are relevant to Biodiversity and Ecosystem research.
The following topics will be discussed:
1. Synergy between the biodiversity components of different initiatives, also in view of the supporting role of the European research infrastructures in this area.
2. A strategy for the development of biodiversity research infrastructures in the next ten years in view of emerging scientific and technical challenges.

Further information: EuroMarine

The next GEO European Projects' Workshop (GEPW7) is planned to take place in Barcelona on 8 and 9 April 2013. The event, which will be hosted by CREAF (Centre for Ecological Research and Forestry Applications) of the Universitat Autònoma of Barcelona, is intended to bring all those interested in and actively contributing to the GEOSS from all over Europe together in order to present their work and actively discuss how Europe can contribute to GEO and GEOSS.
The proposed venue is the famous Catalan art nouveau building owned by the university: "La Casa de la Convalescència" (Convalescence House) located in the centre of the city.
All Coordinators of EC projects are informed and encouraged to notify members of their teams or colleagues who may be interested in participating.
Event web page: Geo European Projects Workshop 2013

Organizers: Helmholtz Centre for Environmental Research - UFZ & Leibniz Institute of Freshwater Ecology and Inland Fisheries - IGB
Place: Schloß Machern, Leipzig, Germany
Event web page: BioFresh Annual Meeting 2013

iMarine e-Infrastructure for data driven decision making and research
iMarine  is organising an invitation-only workshop to discuss data driven decision making and research on 14th & 15th May 2013 at DG Connect, Avenue de Beaulieu 33 (BU33), Room 0/54, Brussels, Belgium.
The goal of iMarine is to facilitate policy makers in addressing the global challenges impacting on the marine ecosystem, the fisheries sector, local economies and communities and to demonstrate that science based policy making can benefit from a large and distributed e-Infrastructure for cross-disciplinary data collection, harmonization and analysis necessary for the management and conservation of marine living resources.

The first EU BON Informatics Workshop will take place in Trondheim, Norway from 29 to 31 May 2013. The event aims at discussing the data standards and informatics architecture that will be followed by the EU BON project. The workshop will also focus on highlighting linkages to GEOSS Common Infrastructure and the GEO BON. Among the agenda on the list are also presentation of the plans and operations of the EU BON Helpdesk as well as the first assembly of the global Informatics Task Force of EU BON. The workshop is by invitation only. The agenda and travel details have been updated on 2 May 2013, see the below attachment.

Тhe first meeting of the Freshwater Steering Group to be held in Uppsala, Sweden, on 10–12 June, 2013. The meeting is kindly supported by the Swedish EPA.

Please register for the workshop by sending an e-mail to Willem.Goedkoop@slu.se no later than 13 May.

The EU BON – Biofresh Meeting will take place on November 25 2013 at the Leibniz Association Headquarter in Berlin, Germany. EU BON and Biofresh participants will present both projects and their key products, followed by discussion-rounds: Synergies and linkages between BioFresh-EU BON.

Introduction to using BioVeL workflows for taxonomic refinement, biogeographic analysis, and species distribution modelling

The training workshop will teach the attendees in using the informatic tools and services developed by the BioVeL project to address research topics such as historical analyses, invasive species distribution modelling, endangered species distribution modelling, and dynamic modelling of ecologically related species. In particular, there will be  introductions to the BioVeL e-infrastructure, Taxonomic data cleaning, Taxonomic name resolution and synonym expansion, Ecological niche modelling, model testing, statistical analysis of GIS data, invasive and endangered species distribution modelling, historical comparison biodiversity from museum collections. more ...

The FP7 projects BioFresh and WaterDiss2.0 are pleased to announce the E-seminar "Data Exchange for Biodiversity Conservation in Freshwater Ecosystems: Introducing the BioFresh Platform and Data Portal". The E-seminar will take place on Thursday, November 28 from 14:00 to 15:00 CET.

It will be hosted on the seminar website (http://waterdiss.eu/eseminar-biofresh) where a link will be available for it.

The E-seminar will introduce the audience to the usage of the BioFresh Platform and Data Portal, in order to ensure a better understanding of the different components. Aaike De Wever, Science Officer of BioFresh, will explain which data and information are integrated and for which contributions BioFresh is looking. Participants are encouraged to join in for a live discussion via "Citrix go to Webinar".

If you want to participate in the e-seminar, you only need to send an email to evelyn.lukat@ecologic.eu. You will receive further information via mail. If you decide on participating later, you can also simply join the seminar by following the link provided on November 28^th on this website.

A few important notes:

• The e-seminar will be conducted in English
• The video and the questions asked during the session will be available on the websites of the BioFresh data portal and this website.

Technical details on the E-seminar:

• When clicking on the link, the application Citrix Go To Webinar will be downloaded. Nothing will be installed on your computer. However, please make sure that your computer is able to run java applications.
• Please make sure that the sound system on your computer works. If your sound system does not work properly, you can also dial in via phone. Please check the dial-in number for your country on this website by November 28^th.

The Royal Museum for Central Africa (RMCA) in Tervuren (Belgium) is part of the FishBase Consortium and responsible for the information on the fresh- and brackish water fishes of Africa. Through an agreement with the Belgian Development Cooperation and as part of the FishBase programme, the RMCA has five grants available for a 3-month training programme in the use of FishBase and the taxonomy of African fishes.

The training includes three subsets:

1. A detailed explanation of FishBase in all its aspects;
2. A training in the taxonomy of African fishes; and
3. A case study based on data from FishBase or on taxa for which taxonomic problems have been encountered.

The main focus of the training is on fish biodiversity data and their integration into FishBase, and on how to use and contribute data to FishBase. The context of these contributions may vary and can also include the knowledge on common names, fish ecology, fisheries statistics, aquaculture and many other areas of fish biology.

After the training, the participants should be able to make their own contribution to fish biology and continue to work on FishBase. They are encouraged to teach their newly apprehended skills to new/local users, to help in completing the database and keeping it up to date, and to spread the use of FishBase as a source of information and a fisheries tool.

This course has been offered annually since 2005 and is held at the Royal Museum for Central Africa (Leuvensesteenweg 13, B-3080 Tervuren, Belgium).

To apply for traineeship and for more information, go to:
http://www.africamuseum.be/research/collaborations/training/group?set_language=en&cl=en

Please note that for 2014, this course will be given in French only.

A key goal of the iMarine initiative is to support stakeholders in a sustainable use of the marine ecosystem. 

On 7th March 2014, iMarine is organizing an interactive workshop "iMarine data platform for collaborations" to showcase how its powerful data infrastructure is capable of addressing the challenges of the Ecosystem Approach. 

The workshop also offers important opportunities to work together on developing plans related to iMarine sustainability, such as the public partnership model concept, as well as engage new potential users and partners for the future. 

The workshop is co-located with the Fishery Dependent Information conference and will take place at Food and Agriculture Organisation of the United Nations (FAO) headquarters, Viale delle Terme di Caracalla, 00153 Rome, Italy. 

Participation is free of charge but subject to registration. 

The 9th International Conference on Open Repositories will be held from 9 to 13 June, 2014 in Helsinki,  Finland. It is the leading international conference in its field, and the attendance is likely to be around 400, with participants from all around the world. The main theme of the conference is "Towards Repository Ecosystems".

DataONE will host an all-day workshop at the conference on Monday, 9 June.

The full conference program is likely to published in late April, 2014, but there is a draft version of the schedule available.

Conference registration has been open since February 14, 2014. There are also sponsorship opportunities available.

The conference will be hosted by University of Helsinki‘s twin libraries: Helsinki University Library and the National Library of Finland. You can contact the organizers by e-mail: or-2014[at]helsinki.fi.

For more information and to register, please visit the conference wensite:http://or2014.helsinki.fi/

The European Commission announces the 8th GEO European Projects Workshop (GEPW-8) which will take place in Athens, Greece, on 12 and 13 June, hosted by the Greek GEO Office - National Observatory of Athens and co-organized by the Mariolopoulos-Kanaginis Foundation for the Environmental Sciences.

The eighth of the annual series of GEO European Projects Workshops is intended to bring all those interested in and actively contributing to the Global Earth Observations System of Systems (GEOSS) from all over Europe together, in order to present their work and discuss how Europe can contribute to this international effort, especially in the wake of the launch of the new EU Framework Programme for Research, Horizon 2020, and renewal of the mandate of GEO for another 10 years through the endorsement of the 2014 Geneva Declaration.

Registration:

Registration is already open since 20th of March at the GEPW8 website.
Registration for attendance deadline: May 23, 2014
Registration of presentation deadline: April 30, 2014. Application form will be available at GEPW8 website.

For more information please visit the event's website at: www.gepw8.noa.gr