ri Chemical crystallography and crystal engineering By journals.iucr.org Published On :: Today, there is very little doubt that chemistry owes as much to crystallography as crystallography does to chemistry. This mutual synergy defines modern chemical crystallography. Full Article text
ri Rochelle salt – a structural reinvestigation with improved tools. I. The high-T paraelectric phase at 308 K By journals.iucr.org Published On :: A novel sample cell with control of temperature and relative humidity permitted collection of data of excellent quality, enabling unrestrained refinement of all atomic parameters. One of the K atoms in the structure is disordered; very strong anisotropy in three of the four water O atoms indicates partial static disorder, which does not involve the bonded H atoms. Full Article text
ri Ripon sinkhole concerns halt Harrogate council homes plans - BBC News By www.bbc.com Published On :: Thu, 03 Oct 2019 07:00:00 GMT Ripon sinkhole concerns halt Harrogate council homes plans BBC News Full Article
ri British Geological Survey recreates Great Britain in Minecraft - Eurogamer.net By www.eurogamer.net Published On :: Wed, 27 Aug 2014 07:00:00 GMT British Geological Survey recreates Great Britain in Minecraft Eurogamer.net Full Article
ri Fracking in the UK was doomed a decade ago – Tories have wasted precious time on a fossil fuel fantasy - The Conversation UK By theconversation.com Published On :: Tue, 12 Nov 2019 08:00:00 GMT Fracking in the UK was doomed a decade ago – Tories have wasted precious time on a fossil fuel fantasy The Conversation UK Full Article
ri 151 homes for Keyworth recommended for approval by council - West Bridgford Wire By westbridgfordwire.com Published On :: Thu, 23 May 2019 07:00:00 GMT 151 homes for Keyworth recommended for approval by council West Bridgford Wire Full Article
ri The Ground Shakes Under Britain Again, Forcing the Government to Ban Fracking - Fortune By fortune.com Published On :: Sun, 03 Nov 2019 07:00:00 GMT The Ground Shakes Under Britain Again, Forcing the Government to Ban Fracking Fortune Full Article
ri Fast trashion: Exhibition of garments made from street-litter opens at Imperial | Imperial News - Imperial College London By www.imperial.ac.uk Published On :: Tue, 07 Jan 2020 08:00:00 GMT Fast trashion: Exhibition of garments made from street-litter opens at Imperial | Imperial News Imperial College London Full Article
ri Earthquake strikes Sussex/Surrey border | Meridian - ITV News - ITV News By www.itv.com Published On :: Sat, 04 May 2019 07:00:00 GMT Earthquake strikes Sussex/Surrey border | Meridian - ITV News ITV News Full Article
ri Interview: Michael Stephenson, British Geological Survey head of science & technology - The Engineer By www.theengineer.co.uk Published On :: Mon, 16 Jan 2017 08:00:00 GMT Interview: Michael Stephenson, British Geological Survey head of science & technology The Engineer Full Article
ri Small earthquake recorded in Stirling on Christmas Day - Daily Record By www.dailyrecord.co.uk Published On :: Thu, 02 Jan 2020 12:34:01 GMT Small earthquake recorded in Stirling on Christmas Day Daily Record Full Article
ri Tsunami warning: Britain could be hit by 30m wave - Professor warns of hazards to Britain - Express.co.uk By www.express.co.uk Published On :: Mon, 18 Nov 2019 08:00:00 GMT Tsunami warning: Britain could be hit by 30m wave - Professor warns of hazards to Britain Express.co.uk Full Article
ri Ripon sinkhole: British Geological Survey says area susceptible to holes - BBC News By www.bbc.co.uk Published On :: Sat, 12 Nov 2016 08:00:00 GMT Ripon sinkhole: British Geological Survey says area susceptible to holes BBC News Full Article
ri British Geological Survey submits application for geoenergy observatory in Cheshire - ThinkGeoEnergy By www.thinkgeoenergy.com Published On :: Fri, 04 Jan 2019 08:00:00 GMT British Geological Survey submits application for geoenergy observatory in Cheshire ThinkGeoEnergy Full Article
ri Improving Britain’s geological mapping - The Guardian By www.theguardian.com Published On :: Wed, 27 Mar 2019 07:00:00 GMT Improving Britain’s geological mapping The Guardian Full Article
ri Scottish Highlands hit by earthquake with magnitude measuring 2.3 - The Scottish Sun By www.thescottishsun.co.uk Published On :: Tue, 07 Jan 2020 08:00:00 GMT Scottish Highlands hit by earthquake with magnitude measuring 2.3 The Scottish Sun Full Article
ri Earthquake strikes the west Highlands - Press and Journal By www.pressandjournal.co.uk Published On :: Wed, 08 Jan 2020 08:00:00 GMT Earthquake strikes the west Highlands Press and Journal Full Article
ri Earth's North Magnetic Pole Keeps Drifting towards Siberia, Latest World Magnetic Model Shows | Geophysics, Geoscience - Sci-News.com By www.sci-news.com Published On :: Fri, 27 Dec 2019 08:00:00 GMT Earth's North Magnetic Pole Keeps Drifting towards Siberia, Latest World Magnetic Model Shows | Geophysics, Geoscience Sci-News.com Full Article
ri Dr Tim Gregory Works with a Meteorite That's Older Than The Earth - LeftLion By www.leftlion.co.uk Published On :: Wed, 14 Aug 2019 07:00:00 GMT Dr Tim Gregory Works with a Meteorite That's Older Than The Earth LeftLion Full Article
ri 'Several people' feel shaking as 4.2 magnitude earthquake strikes 190 miles from Dundee - The Courier By www.thecourier.co.uk Published On :: Wed, 25 Sep 2019 07:00:00 GMT 'Several people' feel shaking as 4.2 magnitude earthquake strikes 190 miles from Dundee The Courier Full Article
ri 'Rumbling' felt during Ardnamurchan earthquake - BBC News By www.bbc.com Published On :: Tue, 17 Mar 2020 07:00:00 GMT 'Rumbling' felt during Ardnamurchan earthquake BBC News Full Article
ri Geologists discover hundreds of buried valleys throughout Britain - Press and Journal By www.pressandjournal.co.uk Published On :: Thu, 04 Jul 2019 07:00:00 GMT Geologists discover hundreds of buried valleys throughout Britain Press and Journal Full Article
ri Researchers Describe Why Earth's Magnetic North Pole Is Straying Away From Canada Towards Siberia - The Digital Wise By thedigitalwise.com Published On :: Sat, 09 May 2020 06:54:00 GMT Researchers Describe Why Earth's Magnetic North Pole Is Straying Away From Canada Towards Siberia The Digital Wise Full Article
ri Lockdown has cut Britain's vibrations, seismologists find - The Guardian By www.theguardian.com Published On :: Mon, 06 Apr 2020 19:15:48 GMT Lockdown has cut Britain's vibrations, seismologists find The Guardian Full Article
ri Snowdonia earthquake confirmed by British Geological Survey - Daily Post By www.dailypost.co.uk Published On :: Mon, 09 Sep 2019 16:51:30 GMT Snowdonia earthquake confirmed by British Geological Survey Daily Post Full Article
ri Kendalian Dr Kent Brooks trained new director of British Geological Survey - The Westmorland Gazette By www.thewestmorlandgazette.co.uk Published On :: Fri, 19 Jul 2019 07:00:00 GMT Kendalian Dr Kent Brooks trained new director of British Geological Survey The Westmorland Gazette Full Article
ri Fracking firm Cuadrilla signs secret deal with geological agency to 'destroy confidential documents' - iNews By inews.co.uk Published On :: Fri, 23 Aug 2019 21:07:09 GMT Fracking firm Cuadrilla signs secret deal with geological agency to 'destroy confidential documents' iNews Full Article
ri Riddle of 'bang' in Birmingham intensifies as British Geological Survey issue statement - Birmingham Live By www.birminghammail.co.uk Published On :: Tue, 19 Nov 2019 21:52:31 GMT Riddle of 'bang' in Birmingham intensifies as British Geological Survey issue statement Birmingham Live Full Article
ri Coronavirus: the week explained - 10 April - The Guardian By www.theguardian.com Published On :: Fri, 10 Apr 2020 11:11:36 GMT Coronavirus: the week explained - 10 April The Guardian Full Article
ri Ancient underwater landslides help Brit scientists predict tsunamis - Metro.co.uk By metro.co.uk Published On :: Fri, 24 Apr 2020 07:16:08 GMT Ancient underwater landslides help Brit scientists predict tsunamis Metro.co.uk Full Article
ri Scientists Explain Why Earth’s Magnetic North Pole Is Drifting Away From Canada Towards Siberia - Mashable India By in.mashable.com Published On :: Fri, 08 May 2020 13:10:00 GMT Scientists Explain Why Earth’s Magnetic North Pole Is Drifting Away From Canada Towards Siberia Mashable India Full Article
ri British Geological Survey welcomes visit from Rushcliffe MP - Agg-Net By www.agg-net.com Published On :: Thu, 13 Feb 2020 08:00:00 GMT British Geological Survey welcomes visit from Rushcliffe MP Agg-Net Full Article
ri Why the UK's streets have turned silent during coronavirus lockdown - Express.co.uk By www.express.co.uk Published On :: Wed, 29 Apr 2020 07:00:00 GMT Why the UK's streets have turned silent during coronavirus lockdown Express.co.uk Full Article
ri Ancient underwater landslides help predict tsunami risk - Aberdeen Evening Express By www.eveningexpress.co.uk Published On :: Thu, 23 Apr 2020 07:00:00 GMT Ancient underwater landslides help predict tsunami risk Aberdeen Evening Express Full Article
ri Did the earth move for you? British Geological Survey has asked if Cumbrians felt an earth tremor last week - News & Star By www.newsandstar.co.uk Published On :: Sat, 02 May 2020 04:00:00 GMT Did the earth move for you? British Geological Survey has asked if Cumbrians felt an earth tremor last week News & Star Full Article
ri Characterization of the Pseudomonas aeruginosa T6SS PldB immunity proteins PA5086, PA5087 and PA5088 explains a novel stockpiling mechanism By scripts.iucr.org Published On :: 2020-04-28 The bacterial type VI secretion system (T6SS) secretes many toxic effectors to gain advantage in interbacterial competition and for eukaryotic host infection. The cognate immunity proteins of these effectors protect bacteria from their own effectors. PldB is a T6SS trans-kingdom effector in Pseudomonas aeruginosa that can infect both prokaryotic and eukaryotic cells. Three proteins, PA5086, PA5087 and PA5088, are employed to suppress the toxicity of PldB-family proteins. The structures of PA5087 and PA5088 have previously been reported, but the identification of further distinctions between these immunity proteins is needed. Here, the crystal structure of PA5086 is reported at 1.90 Å resolution. A structural comparison of the three PldB immunity proteins showed vast divergences in their electrostatic potential surfaces. This interesting phenomenon provides an explanation of the stockpiling mechanism of T6SS immunity proteins. Full Article text
ri Structure of the 4-hydroxy-tetrahydrodipicolinate synthase from the thermoacidophilic methanotroph Methylacidiphilum fumariolicum SolV and the phylogeny of the aminotransferase pathway By scripts.iucr.org Published On :: 2020-04-28 The enzyme 4-hydroxy-tetrahydrodipicolinate synthase (DapA) is involved in the production of lysine and precursor molecules for peptidoglycan synthesis. In a multistep reaction, DapA converts pyruvate and l-aspartate-4-semialdehyde to 4-hydroxy-2,3,4,5-tetrahydrodipicolinic acid. In many organisms, lysine binds allosterically to DapA, causing negative feedback, thus making the enzyme an important regulatory component of the pathway. Here, the 2.1 Å resolution crystal structure of DapA from the thermoacidophilic methanotroph Methylacidiphilum fumariolicum SolV is reported. The enzyme crystallized as a contaminant of a protein preparation from native biomass. Genome analysis reveals that M. fumariolicum SolV utilizes the recently discovered aminotransferase pathway for lysine biosynthesis. Phylogenetic analyses of the genes involved in this pathway shed new light on the distribution of this pathway across the three domains of life. Full Article text
ri Structure-based screening of binding affinities via small-angle X-ray scattering By scripts.iucr.org Published On :: 2020-05-06 Protein–protein and protein–ligand interactions often involve conformational changes or structural rearrangements that can be quantified by solution small-angle X-ray scattering (SAXS). These scattering intensity measurements reveal structural details of the bound complex, the number of species involved and, additionally, the strength of interactions if carried out as a titration. Although a core part of structural biology workflows, SAXS-based titrations are not commonly used in drug discovery contexts. This is because prior knowledge of expected sample requirements, throughput and prediction accuracy is needed to develop reliable ligand screens. This study presents the use of the histidine-binding protein (26 kDa) and other periplasmic binding proteins to benchmark ligand screen performance. Sample concentrations and exposure times were varied across multiple screening trials at four beamlines to investigate the accuracy and precision of affinity prediction. The volatility ratio between titrated scattering curves and a common apo reference is found to most reliably capture the extent of structural and population changes. This obviates the need to explicitly model scattering intensities of bound complexes, which can be strongly ligand-dependent. Where the dissociation constant is within 102 of the protein concentration and the total exposure times exceed 20 s, the titration protocol presented at 0.5 mg ml−1 yields affinities comparable to isothermal titration calorimetry measurements. Estimated throughput ranges between 20 and 100 ligand titrations per day at current synchrotron beamlines, with the limiting step imposed by sample handling and cleaning procedures. Full Article text
ri Chirality in Biological Nanospaces: Reactions in Active Sites. By Nilashis Nandi. Pp. 209. CRC Press, 2011. Price £79.99. ISBN 9781439840023. By journals.iucr.org Published On :: Full Article text
ri Visualization Bench for the screening of crystallization assays and the automation of in situ experiments By journals.iucr.org Published On :: Full Article text
ri Industrial cryo-EM facility setup and management By journals.iucr.org Published On :: The setup and operation of an industrial cryo-EM laboratory is described. Full Article text
ri Exploring the complex map of insulin polymorphism: a novel crystalline form in the presence of m-cresol By journals.iucr.org Published On :: A novel monoclinic phase of human insulin co-crystallized with m-cresol was structurally characterized by means of powder and single-crystal X-ray diffraction. Full Article text
ri Sample deposition onto cryo-EM grids: from sprays to jets and back By journals.iucr.org Published On :: Sample preparation within single-particle cryo-electron microscopy can still be a significant bottleneck, with issues in reproducibility, ice quality and sample loss. New approaches have recently been reported that use spraying or pin printing instead of the traditional blotting approach. Here, experience in the use of different nozzle designs and spraying regimes is reported together with their influence on the resulting spray and grid quality. Full Article text
ri The crystal structure of the heme d1 biosynthesis-associated small c-type cytochrome NirC reveals mixed oligomeric states in crystallo By journals.iucr.org Published On :: The crystal structure of the c-type cytochrome NirC from Pseudomonas aeruginosa has been determined and reveals the simultaneous presence of monomers and 3D domain-swapped dimers in the same asymmetric unit. Full Article text
ri Scaling diffraction data in the DIALS software package: algorithms and new approaches for multi-crystal scaling By journals.iucr.org Published On :: A new scaling program is presented with new features to support multi-sweep workflows and analysis within the DIALS software package. Full Article text
ri Development of basic building blocks for cryo-EM: the emcore and emvis software libraries By journals.iucr.org Published On :: This article presents an overview of the development of two basic software libraries for image manipulation and data visualization in cryo-EM: emcore and emvis. Full Article text
ri Structure–function study of AKR4C14, an aldo-keto reductase from Thai Jasmine rice (Oryza sativa L. ssp. Indica cv. KDML105) By journals.iucr.org Published On :: Rice AKR in the apo structure reveals the ordered open conformation and its key residues which form the substrate channel wall and determine its substrate preference for straight-chain aldehydes. Full Article text
ri Polymeric poly[[decaaquabis(μ6-1,8-disulfonato-9H-carbazole-3,6-dicarboxylato)di-μ3-hydroxy-pentazinc] decahydrate] By scripts.iucr.org Published On :: 2019-05-14 The asymmetric unit of the title MOF, [Zn5(C14H5NO10S2)2(OH)2(H2O)10]n comprises three ZnII atoms, one of which is located on a centre of inversion, a tetra-negative carboxylate ligand, one μ3-hydroxide and five water molecules, each of which is coordinated. The ZnII atom, lying on a centre of inversion, is coordinated by trans sulfoxide-O atoms and four water molecules in an octahedral geometry. Another ZnII atom is coordinated by two carboxylate-O atoms, one hydroxy-O, one sulfoxide-O and a water-O atom to define a distorted trigonal–bipyramidal geometry; a close Zn⋯O(carboxylate) interaction derived from an asymmetrically coordinating ligand (Zn—O = 1.95 and 3.07 Å) suggests a 5 + 1 coordination geometry. The third ZnII atom is coordinated in an octahedral fashion by two hydroxy-O atoms, one carboxylate-O, one sulfoxide-O and two water-O atoms, the latter being mutually cis. In all, the carboxylate ligand binds six ZnII ions leading to a three-dimensional architecture. In the crystal, all acidic donors form hydrogen bonds to oxygen acceptors to contribute to the stability of the three-dimensional architecture. Full Article text
ri 6-Amino-2-iminiumyl-4-oxo-1,2,3,4-tetrahydropyrimidin-5-aminium sulfate monohydrate By scripts.iucr.org Published On :: 2019-05-17 The title compound, C4H9N5O2+·SO42−·H2O, is the monohydrate of the commercially available compound `C4H7N5O·H2SO4·xH2O'. It is obtained by reprecipitation of C4H7N5O·H2SO4·xH2O from dilute sodium hydroxide solution with dilute sulfuric acid. The crystal structure of anhydrous 2,4,5-triamino-1,6-dihydropyrimidin-6-one sulfate is known, although called by the authors 5-amminium-6-amino-isocytosinium sulfate [Bieri et al. (1993). Private communication (refcode HACDEU). CCDC, Cambridge, England]. In the structure, the sulfate group is deprotonated, whereas one of the amino groups is protonated (R2C—NH3+) and one is rearranged to a protonated imine group (R2C=NH2+). This arrangement is very similar to the known crystal structure of the anhydrate. Several tautomeric forms of the investigated molecule are possible, which leads to questionable proton attributions. The measured data allowed the location of all hydrogen atoms from the residual electron density. In the crystal, ions and water molecules are linked into a three-dimensional network by N—H⋯O and O—H⋯O hydrogen bonds. Full Article text
ri Dichlorido{N,N,N'-trimethyl-N'-(1H-pyrazol-1-yl-κN2)methyl]ethane-1,2-diamine-κ2N,N'}copper(II) methanol monosolvate By scripts.iucr.org Published On :: 2019-05-31 In the title compound, [CuCl2(C9H18N4)]·CH3OH, the central CuII ion is coordinated by three N atoms from the pyrazole derivative ligand and two chloride co-ligands. The coordination geometry around the CuII ion is distorted trigonal–bipyramidal. In the crystal, the molecules are linked by C—H⋯O, C—H⋯Cl and O—H⋯Cl hydrogen bonds, forming a three-dimensional framework with the lattice solvent molecule. Full Article text