Looked down on with scepticism by many taxonomists, handling big data efficiently is a huge challenge that can only be met with thorough and multi-layered efforts from both scientists and technological developers. Projects like the Pan-European Species-directories Infrastructure (PESI), started in 2009, prove that harmonised taxonomic reference systems and high-quality data sets are possible through dynamic, expertly created and managed online tools. The methods, results and future prospects of PESI are available in the open access Biodiversity Data Journal.

With environmental changes occurring at an unprecedented rate around the world, biological communication needs to be left off the pace at no point. Phenomena such as species' migration, extinction, intrusion; ecosystem stability; decline of pollinators and pest invasion have to be monitored closely and identified momentarily. In order to do so, proper identification based on reliable and easily accessible data is crucial.

Therefore, the three key objectives of PESI include standardisation in taxonomic reference systems, enhancement of the quality and completeness of taxonomic data sets and creation of integrated access to taxonomic information. The five pillars of biological community networks, Zoology, Botany, Marine Biota, Mycology and Phycology, have been integrated in five infrastructural components: knowledge, consensus, standards, data and dissemination.

As a result, PESI did not only merge data from a range of sources and published a total of nearly 450,000 scientific names online. It also maintains networks of outstanding experts and national focal points, so that it makes sure that the taxonomic information, it relies on, is always at its finest, while simultaneously takes care about delivering persistent standards and easily accessible up-to-date biodiversity data.

PESI results will also feed as an essential part for the advancement of relevant EU projects, such as Building the European Biodiversity Observation Network (EU BON). In the EU BON project, the PESI Backbone will be advanced to satisfy the needs of the GEO BON / GEOSS system, also serving as a taxonomic backbone for the projected EU BON Biodiversity Portal.

Aiming at standardisation and integration of taxonomic data across platforms PESI also works in close collaboration with other relevant projects including GBIF, LifeWatch, the Catalogue of Life, the Encyclopedia of Life, the Global Names Architecture, GÉANT, ViBRANT, OpenUp!,BioVeL, iMarine , EU BON and BiodiversityKnowledge .

"Scientific names are key carriers of biodiversity information. Therefore, for the efficient exploring and integration of biodiversity data, the development of a functional taxonomic resolution system, including the establishment of a shared taxonomic standard (as a core component), is essential for all sorts of biodiversity assessments. PESI provides such an infrastructure for Europe, integrating the relevant technical (informatics) and social (knowledge & users) networks into a common work program, serving a wide community of biodiversity workers," says Dr. Yde de Jong, coordinator of the Pan-European Species-directories Infrastructure (PESI) project.

"The PESI Taxonomic Backbone serves as a taxonomic data standard resource, facilitating and optimising the integration and sharing of European biodiversity data, supporting a wide range of European services, major biodiversity programs and stakeholders on nature conservation and biodiversity management," conclude their results the scientists.

Original Source:

de Jong Y, et al. (2015) PESI - a taxonomic backbone for Europe. Biodiversity Data Journal 3: e5848.doi: 10.3897/BDJ.3.e5848

Additional Information:

The Pan-European Species-directories Infrastructure (PESI) provides standardised and authoritative taxonomic information by integrating and securing Europe's taxonomically authoritative species name registers and nomenclators (name databases) and associated expert(ise) networks that underpin the management of biodiversity in Europe. PESI kicked-off as an EC-FP7 project, running from 2009 to 2011.

PESI proceeded from the EC-FP6 Networks of Excellence EDIT, on developing a European Distributed Institute of Taxonomy, and MarBEF, on Marine Biodiversity and Ecosystem Functioning.

Building the European Biodiversity Observation Network (EU BON) is a European research project, financed by the 7th EU framework programme for research and development (FP7). EU BON seeks ways to better integrate biodiversity information and implement into policy and decision-making of biodiversity monitoring and management in the EU.

The Royal Museum for Central Africa (RMCA) in Tervuren (Belgium) is part of the FishBase Consortium and responsible for the information on the fresh- and brackish water fishes of Africa in the FishBase database. Through an agreement with the Belgian Development Cooperation and as part of the FishBase program, the RMCA has five (5) grants available for a 3-month training program in the use of FishBase and the taxonomy of African fishes.

The training will have three subsets:

1. A detailed explanation of FishBase in all its aspects;
2. A training in the taxonomy of African fishes;
3. A case study based on data from FishBase or on taxa for which taxonomic problems have been encountered.

This course has been offered annually since 2005 and is held at the Royal Museum for Central Africa (Leuvensesteenweg 13, B-3080 Tervuren, Belgium). For more information and to apply for this three-month training grant, see: http://fishbase.africamuseum.be or www.fishbaseforafrica.org. Please note that for 2016, this course will be given in French only.

Questions? Contact Dimitri Geelhand de Merxem (dimitri.geelhand@africamuseum.be).

We are happy to announce the latest member of our Associated Partners list - MUSE (Museo delle Scienze). 

MUSE, or the Science Museum is an auxiliary body of the Autonomous Province of Trento. Its task is to interpret nature, starting from the mountains, using the eyes, tools, and applications of scientific research, taking advantage of the challenges of the contemporary world, stimulating scientific curiosity and the pleasure of knowledge, giving value to science, innovation, and sustainability. 

We look forward to more institutions and projects joining our Associated Partners family.

October 2015 updates for both FishBase (www.fishbase.org) and SeaLifeBase (www.sealifebase.org) are now online!

The ASEAN Centre for Biodiversity (ACB) marked its 10^th year with the theme, "ACB and ASEAN Member States: A Decade of Cooperation on Biodiversity Conservation."  The celebration covered a number of activities on 2 October 2015 at the College of Forestry and Natural Resources, University of the Philippines, Los Banos, Philippines. These included the groundbreaking ceremony of the new ACB headquarters; Tree Growing Activity at the "Tree World"; awarding of the Zooming in on Biodiversity Photo Contest Winners; and "Nawa'y Muli Tayong Makauwi," a musical theatre show on biodiversity conservation. 

The event provided ACB with an opportunity to promote the milestones of the Centre, and a venue for the ASEAN Member States, ACB and its partner organizations and countries to get together and further strengthen collaborations and reaffirm commitments to conserve the rich biodiversity of the ASEAN region.

Find more updates in the latest ASEAN Biodiversity Bulletin.

Butterfly monitoring at local, national, regional, and global levels is the topic of the first of the GEO BON Technical Series reports produced to provide stakeholders with practical guidance for biodiversity conservation.

The report is jointly produced by GEO BON, EU BON, UNEP-WCMC, the German Centre for Integrative Biodiversity Research (iDiv) and Dutch Butterfly Conservation, as a follow up of a joint workshop, which took place in December 2014, to catalyse the process for the development of global butterfly monitoring guidelines and the creation of a new specialist butterfly monitoring group.

The report titled "Guidelines for Standardised Global Butterfly Monitoring" provides a suite of standard field protocols that can measure butterfly population change over various spatial and temporal scales, and that can be applied in any part of the world.

The importance of butterfly monitoring programmes lies in the fact that they provide information about population trends and changes that can be then used as indicators of biodiversity and environmental change outside of the butterfly context.

The guidelines are intended for scheme coordinators, i.e. people wishing to establish butterfly monitoring in any part of the world. The guidelines explain how to set up butterfly monitoring that can provide consistent and comparable results between sites and between years, consistent with international standards.

The ambition behind this new publication is that butterfly populations around the world are well monitored, thereby providing vital information on how these insect populations and other parts of biodiversity are changing. This information is important for feeding into local, national, regional, and global decision-making to help reduce biodiversity loss as well as raising awareness of butterflies and biodiversity in general.

Original Source:

Van Swaay, C., Regan, E., Ling, M., Bozhinovska, E., Fernandez, M., Marini-Filho, O.J., Huertas, B., Phon, C.-K., Kőrösi, A., Meerman, J., Pe’er, G., Uehara-Prado, M., Sáfián, S., Sam, L., Shuey, J., Taron, D., Terblanche, R., and Underhill, L. (2015). Guidelines for Standardised Global Butterfly Monitoring. Group on Earth Observations Biodiversity Observation Network, Leipzig, Germany. GEO BON Technical Series 1, 32pp.

A recently completed benchmark survey of common plants provides a comprehensive dataset of vascular plant diversity and abundance in South Northumberland and Durham, contributing an additional 35,000 observations to the 200,000 observations collected by local recorders since the turn of the millennium.

Apart from contributing an updated inventory of vascular plant diversity, the survey is intended to be used as a reference point with which to identify change in the countryside and study the drivers of biodiversity change in the North-east of England.

Changes in the abundance of rare species have little impact on other species, but change in the abundance of common species can have cascading effects on whole ecosystems. The new survey provides a solid foundation that can be used to qualify the abundance of common species and compare against previous and future studies.

The distribution of heather predicted from the common plant survey data. This is one of the region's most characteristic species and one that many other organisms rely upon for food and cover.

The survey was part of the North-East Common Plants Survey Project, conducted over four years and required volunteers to go to various places. Some surveyed post-industrial brown-field sites, while others walked for miles across bleak moorland to reach sites high in the hills. Although these moors are arguably wilder and natural, the industrial wastelands turn out to be far more biodiverse.

Botanical surveying continues in the region despite the end of the project. Volunteers continue to monitor rare plants in the region and are currently working towards the next atlas of Britain and Ireland, coordinated by the Botanical Society of Britain and Ireland.

This survey is also among the first one to make use of the Integrated Publishing Toolkit (IPT) functionality, jointly developed by EU BON and GBIF, that allows the easy export and exposure of datasets to maximize their discoverability and reuse. The survey was published in the Biodiversity Data Journal, providing easy and streamlined publication of GBIF data via a variety of newly introduced plugins.

Original Source:

Groom Q, Durkin J, O'Reilly J, Mclay A, Richards A, Angel J, Horsley A, Rogers M, Young G (2015) A benchmark survey of the common plants of South Northumberland and Durham, United Kingdom. Biodiversity Data Journal 3: e7318. doi: 10.3897/BDJ.3.e7318

The Tropical Ecology Assessment and Monitoring (TEAM) network has the aim to measure and compare plants, terrestrial mammals, ground-dwelling birds and climate using a standard methodology in a range of tropical forests, from relatively pristine places to those most affected by people. TEAM currently operates in sixteen tropical forest sites across Africa, Asia and Latin America supporting a network of scientists committed to standardized methods of data collection to quantify how plants and animals respond to pressures such as climate change and human encroachment.

A recent TEAM network paper published in PLOS Biology deals with the standartization of methods in assessing biodiversity trends in tropical forest protected areas.

Abstract: 

MUSE (Museo delle Scienze) joined EU BON's Associated Partners family in November 2015. We are now happy to present some more information about the museum and its initiative - the TEAM network.

MUSE is involved in biodiversity monitoring both locally in Trento Province, southeastern Alps, and globally. In particular, its Tropical Biodiversity Section runs a long-term biodiversity research and monitoring programme in the Udzungwa Mountains of Tanzania, an outstanding site for biological diversity and endemism. In 2009, this site became the first in Africa to enter the TEAM Network, a global programme for the standardized monitoring of biodiversity across the tropical moist forests.

 
Camera trap images from the MUSE site in Tanzania; Credit: MUSE – Science Museum 

Started in 2002 by Conservation International (CI), the Tropical Ecology Assessment and Monitoring (TEAM) Network (http://www.teamnetwork.org/ ) – grew to a coalition in 2009 that includes CI, the Smithsonian Tropical Research Institute and the Wildlife Conservation Society. TEAM has collected and made publicly available more than 2.5 million photos from camera traps in tropical forests across the planet. With support from Hewlett Packard Enterprise, formerly Hewlett Packard Company, the TEAM Network is now able to analyze this global data set in near real-time and provide data-driven insights for improving natural resource management.

A major analysis of TEAM data was recently published in PloS Biology and caught vast media coverage as it represents the first standardized assessment of its kind for population trends of tropical forest mammals and terrestrial birds (http://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.1002357). TEAM researchers monitored 244 species of ground-dwelling mammals and birds in 15 protected areas spanning tropical regions in Central and South America, Africa and Southeast Asia. They analyzed more than 2.5 million pictures captured by more than 1,000 camera traps and found that 17% of the animal populations they monitor increased in number while 22% remained constant and 22% decreased. The Wildlife Picture Index (WPI) Analytics System was developed in partnership with Hewlett Packard Company.

WPI is an index that summarizes the occupancy trends at community level and is an official indicator to monitor progresses against the Aichi Targets under the CBD (http://www.bipindicators.net/wildlifepictureindex).

In 2015, MUSE – Science Museum established in a Natural Park in the Brenta Dolomites (near Trento) the first site in Europe of systematic camera trapping that adopts the standardized protocol developed by the TEAM Network. This entails the sampling of 60 camera trap locations within an area of 200-250 km2 for 30 days each year, to derive data that are suitable to occupancy analysis and that can allow, as demonstrated by the recent paper in PLoS Biology, to assess population trends using state-of-the-art ecological methods.

MUSE’s scientists hope that this protocol may attract the interest of other partners within the EU BON family that may be keen to replicate this sampling at other sites in Europe.

Open access to biodiversity is key for addressing pertinent ecological issues such as biodiversity loss and impacts of climate change. On 22 & 23 March 2016, experts from EU BON met with scientists, policy makers and practitioners from across Europe to discuss issues of biodiversity data sharing, curation and publishing.

The workshop, which took place in Sofia, Bulgaria, introduced participants to key concepts, demonstration and practical exercise in biodiversity data sharing using the GBIF Integrated Publishing Toolkit (IPT). Practical training sessions led by Larissa Smirnova from the Royal Museum for Central Africa (Belgium) and Kyle Braak from GBIF demonstrated the integration and management of datasets in GBIF. A step-by-step demo and practical session on how to publish a data was also featured in the workshop.

Participants at the EU BON data sharing & data publishing workshop in Sofia; Credit: Pensoft

Special attention was paid to innovative data publishing practices in a session led by the local hosts Pensoft Publishers who introduced their ARPHA publishing platform, as well as its new journal Research Ideas & Outcomes (RIO), which publishes unconventional output types across the research cycle, including data and software descriptions, workflows, methods and many more.

PlutoF demonstrated its citizen science gateway and  demonstrated how the citizen science data can be managed using the CS module. Plazi also presented their GoldenGate Imagine tool, optimized for marking up, enhancing, and extracting text and data from PDF files.

    
Sessions at the at the EU BON data sharing & data publishing workshop in Sofia; Credit: Pensoft

ECSA – the European Citizen Science Association is the latest addition to our ever growing group of associated partners. The Memorandum of Understanding handover took place at the reception of the ECSA Conference at the Museum für Naturkunde on 19 May 2016.

ECSA is a network of Citizen Science initiatives, research institutes, universities, museums, other organisations and individuals from 20 EU countries, Switzerland, Israel and the US, who are working together with the mission to connect citizens and science through fostering active participation. ECSA is a registered non-profit association administered by a Secretariat hosted at the Museum für Naturkunde, Leibniz Institute for Evolution and Biodiversity Research (MfN) in Berlin, Germany. 

See the full list of associated partners here.

Photo: Signing the MoU between ECSA Chair of Data, Tools and Technology Committee Dr. Jaume Piera and EU BON's Project manager Anke Hoffmann; Credit: Hwaja Götz

The 10th GEO European Projects Workshop that took place from 31 May - 2 June, in Berlin, was a success for EU BON in many ways. Among the significant achievements was signing a Memorandum of Understanding with the ConnectinGEO project to add this important initiative to our ever-growing list of associated partners.

The MoU handed over by EU BON coordinator Dr. Christoph Häuser to Dr. Joan Masó, coordinator of ConnectinGEO.

Handing over the MoU between Christoph Häuser, EU BON (left) and Joan Masó, ConnectinGEO (right); Credit: EU BON

ConnectinGEO is under the umbrella of GEOSS and the EU funding with the aim of linking existing coordinated Earth observation networks with the science and technology (S&T) communities, the industry sector and the GEOSS and Copernicus stakeholders. The goal is to facilitate a broader and more accessible knowledge base to support the needs of the GEO Societal Benefit Areas (SBAs) and their users. A broad range of subjects from climate, natural resources and raw materials, to the emerging UN Sustainable Development Goals (SDGs) will be addressed.

As part of the new 6th Global Environment Outlook (GEO-6) UNEP has just released a separate Assessment for the pan-European region. The report provides an overview on the current state, trends and an outlook for the environment, and also highlights environmental factors that contribute to human health and well-being at the regional level.

Biodiversity is of central importance for human well-being and features prominently in the GEO-6 regional assessment. The state of biodiversity and ecosystems continue to give reason for major concerns and call for continued attention and increased efforts. The European Biodiversity Observation Network – EU BON – through its coordinating institution, the Museum für Naturkunde - Leibniz Institute for Evolution and Biodiversity Science contributed significantly to this report. 

Credits: UNEP/UNECE 2016, UNEP-WCMC based on IUCN (2014) data

The assessment for the pan-European region clearly indicates that biodiversity loss and ecosystem degradation is continuing in the region. Ongoing biodiversity decline and loss is particularly high in Eastern and Western Europe. Some positive developments and individual success stories offer lessons worth learning, for example developments of protected area networks such as Natura 2000 and the pan-European Emerald Network. However, an important challenge that needs urgent attention is improving availability and open access to comprehensive and integrated biodiversity data to support assessments and analysis, as well as planning and implementation of conservation efforts.

The full report can be found here: http://bit.ly/21q2ghL

UNEP press release: http://bit.ly/24A7sQN

For more information please contact:

Dr. Christoph Häuser christoph.häuser@mfn-berlin.de and Dr. Florian Wetzel florian.wetzel@mfn-berlin.de 
Museum für Naturkunde Berlin, Leibniz Institute for Evolution and Biodiversity Science, Invalidenstrassse 43, 10115 Berlin.

The EU BON workshop "Biodiversity research for and by citizens in Eastern Europe: tools, information services and public engagement" was organized to present the EU BON citizen science gateway, share accomplishments of the project, promote products, raise and discuss challenges of citizen science and facilitate networking between countries, especially eastern and central European countries.

There were 33 participants from Baltic countries and Finland and EU BON partners from Norway, Spain, Israel and Brussels. First day was showcasing the citizen science initiatives in Estonia, following best practice examples from EU BON consortium. During the second day the participants got a chance to learn the tools and methods for citizen science data management by ECSA and EU BON. This was followed by world cafe style discussion about the needs of citizen science initiatives and Pan-European citizen science gateway. One of the important conclusions for Baltic countries is that there is a need for stronger collaboration and supportive infrastructure to make citizen science more effective and also deliver accessible data to research community.

Some workshop participants also took part of Tartu Mini-BioBlitz on 29th June, first BioBlitz in Estonia. BioBlitz participants observed 239 species of animals, plants and fungi .

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Workshop agenda

Read a first hand report form the workshop in the two great blog posts by Egle Marija Ramanauskaite (a workshop participant from Lithuania):

http://seplute.tumblr.com/post/146841955105/citsci-overtakes-the-baltics-citizen-science

http://seplute.tumblr.com/post/146844410470/citizen-science-workshop-in-tartu-recap-of-day-2

The planetary boundaries framework attempts to set limits for biodiversity loss within which ecological function is relatively unaffected. In a recent article in Science Newbold et al. present a quantitative global analysis of the extent to which the proposed planetary boundary has been crossed. 

Abstract: 

Land use and related pressures have reduced local terrestrial biodiversity, but it is unclear how the magnitude of change relates to the recently proposed planetary boundary ("safe limit"). We estimate that land use and related pressures have already reduced local biodiversity intactness—the average proportion of natural biodiversity remaining in local ecosystems—beyond its recently proposed planetary boundary across 58.1% of the world’s land surface, where 71.4% of the human population live. Biodiversity intactness within most biomes (especially grassland biomes), most biodiversity hotspots, and even some wilderness areas is inferred to be beyond the boundary. Such widespread transgression of safe limits suggests that biodiversity loss, if unchecked, will undermine efforts toward long-term sustainable development.

The study is available at http://dx.doi/10.1126/science.aaf2201

The ASEAN BIODIVERSITY UPDATES are published by the ASEAN Centre for Biodiversity (ACB) to keep stakeholders informed of news about biodiversity concerns and efforts that are relevant to the ASEAN region. In its latest issue the newsletter provides an overview of the 2016  World Environment Day, as well as gives information about  the new ACB headquarters at the University of the Philippines Los Baños and the organization's training programs.

A special feature gives insights on the Nusa Penida Marine Protected Area in Indonesia, followed by country-specific biodiversity news from accross Southeast Asia.

The full issue is available here.

The EU project EKLIPSE has joined our family of associated partners. The MoU was signed by Dr. Carsten Neßhöver, UFZ, on behalf of EKLIPSE project Coordinator Dr. Allan Watt (NERC-Centre for Ecology and Hydrology, Edinburgh, UK) and Dr. Anke Hoffmann, on behalf of EU BON Coordinator Dr. Christoph Häuser, during the 2016 GEO BON Open Science Conference & All Hands Meeting in Leipzig, Germany.

Dr. Carsten Neßhöver and Dr. Anke Hoffmann at the handing of the MoU; Credit: EKLIPSE

EKLIPSE is a EU project that will set up a sustainable and innovative way of knowing, networking and learning about biodiversity and ecosystem services. EKLIPSE is an unusual project in several ways, particularly:

• The project is funded for four years to develop a sustainable mechanism  that will be in place for many years to come.

• The development of the support mechanism through the project is facilitated by project partners. Their role is to facilitate linkages between science, policy and society, through different actions, such as knowledge synthesis, identifying research priorities, and building the Network of Networks  that will support the other actions.

Are protected areas working when it comes to promoting biodivesity? A new study, published in Nature Communications, shows that local biodiversity is actually higher within, rather than outside protected areas.

Abstract: 

Protected areas are widely considered essential for biodiversity conservation. However, few global studies have demonstrated that protection benefits a broad range of species. Here, using a new global biodiversity database with unprecedented geographic and taxonomic coverage, we compare four biodiversity measures at sites sampled in multiple land uses inside and outside protected areas. Globally, species richness is 10.6% higher and abundance 14.5% higher in samples taken inside protected areas compared with samples taken outside, but neither rarefaction-based richness nor endemicity differ significantly. Importantly, we show that the positive effects of protection are mostly attributable to differences in land use between protected and unprotected sites. Nonetheless, even within some human-dominated land uses, species richness and abundance are higher in protected sites. Our results reinforce the global importance of protected areas but suggest that protection does not consistently benefit species with small ranges or increase the variety of ecological niches.

Original Source:

The original article is openly accessible at:

http://dx.doi.org/10.1038/ncomms12306

Key in ensuring the effectiveness of conservation efforts and maintaining ecosystem health, measuring biodiversity can benefit greatly when remote sensing data comes into the equation. A new EU BON related paper, published in the journal Ecological Indicators, proposes open source solutions for measuring the important Rao's Q index, when it comes to remote sensing data.

Abstract: 

Measuring biodiversity is a key issue in ecology to guarantee effective indicators of ecosystem health at different spatial and time scales. However, estimating biodiversity from field observations might present difficulties related to costs and time needed. Moreover, a continuous data update for biodiversity monitoring purposes might be prohibitive. From this point of view, remote sensing represents a powerful tool since it allows to cover wide areas in a relatively low amount of time. One of the most common indicators of biodiversity is Shannon's entropy H′, which is strictly related to environmental heterogeneity, and thus to species diversity. However, Shannon's entropy might show drawbacks once applied to remote sensing data, since it considers relative abundances but it does not explicitly account for distances among pixels’ numerical values. In this paper we propose the use of Rao's Q applied to remotely sensed data, providing a straightforward R-package function to calculate it in 2D systems. We will introduce the theoretical rationale behind Rao's index and then provide applied examples based on the proposed R function.

Original Source: 

Rocchini, D., Marcantonio, M., Ricotta, C. (2017). Measuring Rao's Q diversity index rom remote sensing: an open source solution. Ecological Indicators, 72: 234-238. [5years-IF: 3.649] DOI:10.1016/j.ecolind.2016.07.039

A new EU BON derived paper, publsihed recently in the journal Remote Sensing, introduces eHabitat+, a habitat modelling service supporting the European Commission’s Digital Observatory for Protected Areas.

Abstract:

Protected areas (PAs) need to be assessed systematically according to biodiversity values and threats in order to support decision-making processes. For this, PAs can be characterized according to their species, ecosystems and threats, but such information is often difficult to access and usually not comparable across regions. There are currently over 200,000 PAs in the world, and assessing these systematically according to their ecological values remains a huge challenge. However, linking remote sensing with ecological modelling can help to overcome some limitations of conservation studies, such as the sampling bias of biodiversity inventories. The aim of this paper is to introduce eHabitat+, a habitat modelling service supporting the European Commission’s Digital Observatory for Protected Areas, and specifically to discuss a component that systematically stratifies PAs into different habitat functional types based on remote sensing data. eHabitat+ uses an optimized procedure of automatic image segmentation based on several environmental variables to identify the main biophysical gradients in each PA. This allows a systematic production of key indicators on PAs that can be compared globally. Results from a few case studies are illustrated to show the benefits and limitations of this open-source tool.

Original Source: 

Martínez-López, J.; Bertzky, B.; Bonet-García, F.J.; Bastin, L.; Dubois, G. Biophysical Characterization of Protected Areas Globally through Optimized Image Segmentation and Classification. Remote Sens. 2016, 8, 780. DOI: 0.3390/rs8090780

Published just recently, a new open access EU BON article discusses the need for additional research efforts beyond standard biodiversity monitoring to reconstruct the impacts of major anthropogenic pressures and to identify meaningful temporal baselines for biodiversity.

The article, published in Scientific Reports, reports on the temporal baselines that could be drawn from biodiversity monitoring schemes in Europe and compares those with the rise of important anthropogenic pressures.

With most biodiversity monitoring schemes initiated late in the 20th century, well after anthropogenic pressures had already reached half of their current magnitude, the team of scientists found that setting temporal baselines from biodiversity monitoring data would underestimate the full range of impacts of major anthropogenic pressures.

The authors stress that these limitations need to be explicitly acknowledged when designing management strategies and policies as they seriously constrain our ability to identify relevant conservation targets aimed at restoring or reversing biodiversity losses.

Find out more in the original research paper:

Mihoub J B, Henle K, Titeux N, Brotons L, Brummitt N A, Schmeller D S (2017) Setting temporal baselines for biodiversity: the limits of available monitoring data for capturing the full impact of anthropogenic pressures. Scientific Reports. http://dx.doi.org/10.1038/srep41591

​SeaLifeBase in CA server (www.sealifebase.ca) has been updated to date.

www.fishbase.ca and ​www.sealifebase.ca have been updated.

A recent story, featured on CORDIS News, focuses on EU BON and its achievements. Based on a recent project's publication in ‘Nature – Scientific Reports’ and information from the project, the new item discusses important project outcomes, including the European Biodiversity Portal, and their contribution to drawing a more accurate picture of current biodiversity to aid efforts for sustainable governance of natural resources.

Here is a snippet from the news feature on CORDIS: 

A recent article published in the journal ‘Scientific Reports’ states, ‘Monitoring schemes provide an important source of information on biodiversity change, guiding further research, conservation assessment and planning.’ The article cites The European Biodiversity Portal, designed and implemented by the EU-funded EU BON project that offers researchers, policy-makers, and others interested in biodiversity, easy access to insights on trends and modelling techniques.

The project worked on the establishment and adoption of new data standards, the development of tools to enable collaborative research and the encouragement of citizen-scientists. As a result, EU BON, by building the European Biodiversity Observation Network, has created advanced techniques for data analysis along with new approaches for modelling and strategies for future biodiversity monitoring.

Read the full publication here.

The German working group on vegetation databases is dedicated to building, maintaining, linking and analysing electronic archives of vegetation plot data and provides the national repository "VegetWeb", hosted by the German Federal Agency for Nature Conservation (BfN). The 12th workshop will be hosted by the new German Centre for Integrative Biodiversity Research (iDiv) in Leipzig, Germany. The central mission of iDiv is to promote theory-driven experiments and synthesis as well as data-driven theory. The concept of iDiv encompasses the detection of biodiversity, understanding its emergence, exploring its consequences for ecosystem functions and services, and developing strategies to safeguard biodiversity under global change. In this context, the combined synthesis of species abundance and distribution data together with information on species characteristics is seen as a high potential to advance our understanding of community assembly and plant diversity patterns. For this reason, important databases have already become part of iDiv's data research platforms, such as the German Vegetation Reference Database (GVRD), the plant trait databases TRY and BIOLFLOR and the Chorology Database Halle (CDH) on plant distribution data. In this workshop, we seek to explore the potentials of such databases for future research, with a specific focus on vegetation databases.
Further Information: http://www.botanik.uni-greifswald.de/idiv_meeting_2013.html

The Research Infrastructures Unit of DG RTD and the infrastructure project LifeWatch invites you to a 1 and ½ day workshop : "Towards a Roadmap for Research Infrastructures on Biodiversity and Ecosystem research in Europe". The workshop will take place Brussels on 19 and 20 March 2013.
The overall objective of this workshop is to develop synergies between ESFRI research infrastructures (RI), existing research infrastructures implemented as Integrating Activities (IA), Integrated Projects (IP) and Joint Programming Initiatives (JPI) which are relevant to Biodiversity and Ecosystem research.
The following topics will be discussed:
1. Synergy between the biodiversity components of different initiatives, also in view of the supporting role of the European research infrastructures in this area.
2. A strategy for the development of biodiversity research infrastructures in the next ten years in view of emerging scientific and technical challenges.

Further information: EuroMarine

SPOT-VEGETATION turns 15 in May 2013!
After a long and successful career as Europe's first truly operational system for global monitoring of vegetation, the mission is now nearing the end of its life cycle.
But the story continues! The role of SPOT-VEGETATION will be taken over by ESA's technologically advanced PROBA-V mission from the summer of 2013 onwards.
To celebrate with us the operational and scientific achievements of SPOT-VEGETATION and to look forward to the intriguing perspectives that will offered to the user's community by PROBA-V, BELSPO and VITO are delighted to invite you to the conference "PROBING VEGETATION"  in Antwerp.

he ASEAN-EU Science, Technology and Innovation Days serve as a visible forum for cooperation activities between the two regions in the field of STI. The event addresses researchers from most thematic areas – with a focus on the societal challenges with relevance to both regions – as well policy makers, research conducting companies and innovation managers. It takes place annually, alternating between an ASEAN and a European country. High-level policy makers as well as many research projects and companies seize the chance to network, discuss, exchange and inform themselves.

EU BON is also going to hold a workshop during the conference  called "Integration of biodiversity data recording and information management systems for environmental sustainability: a call for EU-ASEAN collaboration" (22nd January). The agenda of this workshop (incl. invited speakers) ican also be found here: http://www.stidays.net/?page_id=510

The Royal Museum for Central Africa (RMCA) in Tervuren (Belgium) is part of the FishBase Consortium and responsible for the information on the fresh- and brackish water fishes of Africa. Through an agreement with the Belgian Development Cooperation and as part of the FishBase programme, the RMCA has five grants available for a 3-month training programme in the use of FishBase and the taxonomy of African fishes.

The training includes three subsets:

1. A detailed explanation of FishBase in all its aspects;
2. A training in the taxonomy of African fishes; and
3. A case study based on data from FishBase or on taxa for which taxonomic problems have been encountered.

The main focus of the training is on fish biodiversity data and their integration into FishBase, and on how to use and contribute data to FishBase. The context of these contributions may vary and can also include the knowledge on common names, fish ecology, fisheries statistics, aquaculture and many other areas of fish biology.

After the training, the participants should be able to make their own contribution to fish biology and continue to work on FishBase. They are encouraged to teach their newly apprehended skills to new/local users, to help in completing the database and keeping it up to date, and to spread the use of FishBase as a source of information and a fisheries tool.

This course has been offered annually since 2005 and is held at the Royal Museum for Central Africa (Leuvensesteenweg 13, B-3080 Tervuren, Belgium).

To apply for traineeship and for more information, go to:
http://www.africamuseum.be/research/collaborations/training/group?set_language=en&cl=en

Please note that for 2014, this course will be given in French only.

After a successful networking session in Bangkok, Thailand the SUSTAIN EU-ASEAN project is organising another networking session for interested institutions and research projects in Brussels, Belgium. The event will take place on 28 March 2014 in Brussels, Belgium.This meeting is helpful if you

• want to get to know and network with fellow environment research projects (in the areas of climate change, resource efficiency and raw materials) with an ASEAN focus and/or relevant research results for the region
• want to identify and harness synergies with other projects (possible future cooperation; sharing of results and work, etc.)
• want to get in touch with the SUSTAIN team, communicating what kind of support your research efforts would benefit from

The SUSTAIN EU-ASEAN project generally has to offer

• networking and project twinning support: find and coordinate with similar projects!
• R&D services for results take-up: get support in approaching potential investors!
• communication and exposure support: make your results visible for potential users!

Get in touch here, if you are interested in joining the meeting. The pre-meeting agenda is available as an attachment below,

Read more about the event on the SUSTAIN EU-ASEAN website.

The 2^nd International Conference on Research Infrastructures (ICRI 2014) will take place from 2-4 April 2014 in Athens, Greece.ICRI 2014 will be held under the auspices of the forthcoming Greek Presidency of the European Union, co-organised and supported by the European Commission. Read more here

• Meet and get to know fellow projects working on similar topics of relevance to ASEAN
• Discuss results and synergies, exchange on methodologies, plan for joint events, applications, publications, etc. or simply see what's going on in the other region in this topic.
• Plan concrete next joint steps with projects in the cluster.
• Benefit from SUSTAIN EU-ASEAN support (e.g. in your dissemination, exploitation and development activities) and inputs (on the funding environment)
• Share your views on thematic gaps in current research - SUSTAIN is mandated to carry the message to the European Commission

• Analyze the objectives and priorities of the media;
• Define a storyline and create persuasive and innovative messages;
• Improve skills in presenting to large audiences;
• Gain control of interviews with journalists using effective verbal skills;
• Manage energy and project confidence in interviews with journalists.

Read more in the Draft agenda below.

Following the GEO BON RS4EBV workshop, an EU BON Task Force meeting will take place on 29 January 2015 at the IDIV, Leipzig.

The "Open Science at the Global Scale: Sharing e-Infrastructures, Sharing Knowledge, Sharing Progress" conference will take place on March 31, 2015 in Brussels, Belgium. The conference is organized under the aegis of the European Commission (DG CONNECT) to bring together policy and research stakeholders from all the regions targeted by the project (Asia, Africa, Arabia, India, Europe and Latin America) to discuss major developments and perspectives in the field of global e-Infrastructures for Research and Education.

The main outcomes of the CHAIN-REDS project will be also presented on this occasion:

• The development of a Distributed Computing Infrastructure interoperation model between Europe and other regions
• The promotion of international standards and technical guidelines for interoperability of cloud services across continents
• One of the largest existing e-Infrastructure-related digital information systems, the CHAIN-REDS Knowledge Base
• A complete methodology for better sharing and using scientific data
• The CHAIN-REDS Science Gateway: a single portal for accessing remote computing and data services anywhere in the world
• The support of the creation of Identity Federations to make Authentification and Authorisation easier for users and service providers worldwide
• The main outcomes of the six awareness-raising workshops organised by CHAIN-REDS in Asia, Africa, Arabia, and Latin America

For Registration and more information, please visit the oficial conference webpage: https://agenda.ct.infn.it/event/1110/

The Royal Museum for Central Africa (RMCA) in Tervuren (Belgium) is part of the FishBase Consortium and responsible for the information on the fresh- and brackish water fishes of Africa. Through an agreement with the Belgian Development Cooperation and as part of the FishBase program, the RMCA has five grants available for a 3-month training program in the use of FishBase and the taxonomy of African fishes.

The training includes three subsets:

1. A detailed explanation of FishBase in all its aspects;
2. A training in the taxonomy of African fishes;
3. A case study based on data from FishBase or on taxa for which taxonomic problems have been encountered.

This course has been offered annually since 2005 and is held at the Royal Museum for Central Africa (Leuvensesteenweg 13, B-3080 Tervuren, Belgium). To apply for traineeship and for more information, please click here or here. Please note that for 2015, this course will be given in English only.

Questions? Contact Dimitri Geelhand de Merxem (dimitri.geelhand@africamuseum.be).

European Geosciences Union
General Assembly 2015
Vienna | Austria | 12 – 17 April 2015

http://www.egu2015.eu/home.html

One Workshop partiicluarly relevant for EU BON: ESSI2.17 Aggregation, consolidation and coordination of Earth observation networks. Harmonization and gaps

Convener: Joan Masó
Co-Convener: Ivette Serral

Abstract
We are investing in many efforts in creating pan-European or global EO thematic networks but are managed independently and coordination between them is limited. Europe is investing in the Sentinel constellation an at the same time, several initiatives are setting out to create, maintain and operationalize networks of in-situ sensors. These observation networks are usually conceived with a specific purpose in mind (e.g., air quality monitoring in the main cities or coastal water contamination), and they often lack a general coverage, are scattered irregularly in the territory, and sometimes are removed when the measurement campaign ends. There is a need for integrating systems and coordinating them more efficiently, explore synergies and make progress in harmonized and extend them.
Some initiatives aim to coordinate several themes into a single observation set. This is the case of the Critical Zone Exploration (the Earth’s outer layer from vegetation canopy to the soil and groundwater that sustains human life). The CZEN (Critical Zone Exploration Network; http://www.czen.org) is a network of field sites investigating processes within the Critical Zone.

This session is asking for presentations on the coordination between observation network examples and solutions to overcome technical and political barriers that help to reduce the cost and increase value by combining and sharing structures. Papers discussing gaps or redundancies in the current Earth observation networks are also welcome.

http://meetingorganizer.copernicus.org/EGU2015/session/18560

The official Governing Board meeting, including the GBIF symposium, will take place on 8-10 October in Antananarivo, Madagascar. Prior to that there will be Training sessions for Nodes on 4-5 October, followed by the Global Nodes Meeting on 6-7 October. Committee meetings will take place on 6 October.

A special symposium will be hosted on 7 October where all delegates are invited to attend. After the Governing Board meeting, on 11 October, there is a possibility to visit the Andasibe National Park.  

The  4th edition of the DEST course ‘BASICS of TAXONOMY’ will take place from 5 to16 October 2015 at the Sven Lovén Centre for Marine Sciences, Kristineberg, Sweden.

Taught by renowned experts in their field, the course topics are:

- DELTA
- Digital drawing
- Scientific illustration
- Scientific writing and communication
- Scratchpads, a tool to build, publish and share information on the web

Target audience: MSc students, PhD students, early career researchers

Thanks to funding of the Royal Swedish Academy of Sciences, this 2-weeks course is offered at a discounted rate of 550 EUR.

Fee includes accommodation and meals.                                                                                                                                          

More info: http://taxonomytraining.eu/content/basics-taxonomy-describing-illustrating-and-communicating-biodiversity

The Europena Conference "Nature-based Solutions to Climate Change  in Urban Areas and their Rural Surroundings: Linkages between science, policy and practice" will take place from 17 to 19 November 2015 in Bonn, Germany.

The event is a joint European Conference held by the German Federal Agency for Nature Conservation (BfN) and the European Network of Heads of Nature Conservation Agencies (ENCA) in co-operation with the Helmholtz Centre for Environmental Research (UFZ) / German Centre for Integrative Biodiversity Research (iDiv).

Climate change has significant impact on society and biodiversity in Europe. Urban inhabitants are most likely to experience climate change effects directly because currently 73 per cent of Europeans live in urban areas. Here, management of urban ecosystems offer sustainable and cost-effective solutions to climate change mitigation and adaptation while contributing to human well-being.

This European conference will bring together experts from science, policy and practice to highlight and debate the importance of nature-based solutions to climate change in urban areas and their rural surroundings. Emphasize is given to the potential of nature-based approaches to create multiple-benefits.

The conference is divided into three main areas (day 1: science, day 2: practice and implementation, day 3: policy and business), each of which will be opened by keynote speakers including:

• Hans Bruyninckx (Executive Director European Environmental Agency, EEA)
• Wilhelm Krull (Chair of the H2020 expert group on nature-based solutions and re-naturing cities, Secretary General Volkswagen Foundation)
• Georgina Mace (University College London – UCL, Director of Centre for Biodiversity and Environment Research)
• Christine Wamsler (Lund University, Centre for Sustainability Studies)
• Nataša Jazbinšek (Head of Department for Environmental Protection City of Ljubljana and Head of working group for European Green Capital programme 2016)
• Wolfgang Teubner (ICLEI Regional Director for Europe)
• Kurt Vandenberghe (Director for Climate action and resource efficiency at the European Commission's Directorate-General for Research and Innovation)
• Chantal van Ham (IUCN – EU Programme Manager Nature Based Solutions)
• Dirk Sijmons (Delft University of Technology)

Keynote speeches are complemented by plenary presentations given by leading experts in the fields of urban biodiversity, climate change, and socio-economic effects of nature-based solutions, interactive sessions and a poster exhibition.

Deadline for abstract submission is 24 July 2015 (abstract submission guidelines)

Registration:

Early bird registration deadline: 18 September 2015

Final registration deadline: 30 October 2015

For more information and to register please visit: http://www.ecbcc2015.com/

"Global Biodiversity Assessment and Monitoring: Science, Data and Infrastructure Needs for IPBES and Beyond" is a joint symposium of the Future Earth Clusters ‘Global Biodiversity Assessment and Monitoring, Prediction and Reporting’ and "Support for IPBES", which will take place from 6 to 10 March 2016 in Monte Verita, Ascona, Switzerland. 

The symposium follows up on the initial meeting on "Global Biodiversity Monitoring" at Yale University in May 2015. The 2016 event will in particular bring biodiversity and global change scientists from Europe, Africa, and Asia to this discussion and add as additional focus the scientific needs for IPBES, in particular on indicators and scenarios. Key goals of the conference are to link the main research groups active in this area, improve data sharing, develop collaborative analyses, realize potential synergies and advance international cooperation. Work efforts to date have been organized into several working groups and the meeting will provide opportunity for these groups to advance or complete their work and for new initiatives to form. Future Earth is entering the next formative stage and the symposium is a forum to advance the role of biodiversity within Future Earth as well as develop or engage in new research and funding opportunities under its umbrella.

Please see here for the draft program and logistical information, and http://biodiversitymonitoring.org for more background about the Future Earth Biodiversity Monitoring cluster.

Further information on the event is available in the official announcement here.

The Royal Museum for Central Africa (RMCA) in Tervuren (Belgium), member of the FishBase Consortium and responsible for the information on the fresh- and brackish water fishes of Africa in the FishBase database, is organizing  the 'FishBase and Fish Taxonomy Training Session 2016'. This course has been offered annually since 2005 and held regularly in the RMCA located at Leuvensesteenweg 13, B-3080 Tervuren, Belgium. Through an agreement with the Belgian Development Cooperation and as part of the FishBase program, the RMCA has five (5) grants available for this year's 3-month training program (from 07 March up to 27 May 2016) in the use of FishBase and the taxonomy of African fishes. To apply for traineeship and for more information, see: http://fishbase.africamuseum.be or  www.fishbaseforafrica.org.

The training course will have three (3) subsets:

1. A detailed explanation of FishBase in all its aspects;
2. A training in the taxonomy of African fishes;
3. A case study based on data from FishBase or on taxa for which taxonomic problems have been encountered.

*For 2016, this course will be given in French only.

Questions? Contact Dimitri Geelhand de Merxem (dimitri.geelhand@africamuseum.be).

The 54^th International Conference of the Association of German Taxidermists, organised by the Museum für Naturkunde, Berlin, wiill take place from 5 - 9 April 2016, in Berlin, Germany.

More information: http://www.praeparation.de/aktuelles/54_internationale_arbeitstagung 

European Geosciences Union, General assembly: Interdisciplinary Approaches in Climatic Change Research and Assessment will take place in Vienna from 17 to 22 April 2016.

Adequate response to the challenges associated with climate change requires new formats of scientific research and assessment. In the past, linear approaches, starting from the recognition of climate change, through the analysis of observed or expected impacts and ending with policy recommendations, have been the mainstream. It is now widely recognised that these approaches mostly fail to reach their objectives since they do not account for feedbacks between the physical environment and societal action, nor for the feedbacks in the various subsystems. The objective of this session is to review and discuss the problem of climatic change in all its dimensions, with a special focus on interdisciplinary approaches. Climate change science concerns a number of disciplines, such as physics, biology, economics, social sciences etc. It is essential that new forms for interact between disciplines are found in order to produce innovative results.

We do not expect to cover all the aspects of the climate change science but we hope that as well researchers in physical and natural sciences than researchers in social sciences will find interest to participate at the session to present and discuss a few exciting issues within one of several of these scopes (and more):

- The link between global climate scenarios and the socio-economic developments

- Scenarios for impact studies: from global to local

- Climate services: the relation between scientists and stakeholders

- Ecosystem services: outputs from ecosystems, challenges and responses

- Climate – societal interactions in the last millennia: can we learn from past experience?

- Socio-ecosystems, towards a comprehensive approach to sustainability Science

- The climate change policies to mitigate climatic change

- Climatic change and biodiversity

- How to couple physical, ecological and socio-economic models

- Peoples' perception of risk, how to improve communication

- Sea level change and the problems of low lying areas.

Information: http://egu2016.eu/information/general_information.html

The call for abstracts for the EGU 2016 General Assembly is now open: make sure to submit your abstract by 13 January 2016, 13:00 CET. If you would like to apply for funding from the EGU to attend, please submit your abstract within the next few days, by 1 December. This month the EGU has also open a call for proposals for EGU 2016 co-sponsored meetings and has announced a new grant scheme for EGU members interested in developing an outreach and public engagement project.       

The ASEAN-EU STI Days 2016 will be organised in Hanoi, Vietnam, from 10-12 May, 2016. This year’s edition of the event will focus on presenting academic/industry collaborations in and between ASEAN and the EU in the context of common key societal challenges for both regions.

The ASEAN-EU Science, Technology and Innovation Days are a forum style event, initiated by the European Commission’s 7th Framework Programme funded SEA-EU-NET II project. 

For more information and to register, please go to: http://www.stidays.net

The Ecopotenial General Assembly will take place between from 27 to 30 June 2016 in the Netherlands (exact location to be determined).

More information to follow on the ecopotential website: http://www.ecopotential-project.eu/