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Article Alert: Scientific names of organisms: attribution, rights, and licensing

Background: As biological disciplines extend into the ‘big data’ world, they will need a names-based infrastructure toindex and interconnect distributed data. The infrastructure must have access to all names of all organisms if it is to manage all information. Those who compile lists of species hold different views as to the intellectual property rights that apply to the lists. This creates uncertainty that impedes the development of a much-needed infrastructure for sharing biological data in the digital world.
 
Findings: The laws in the United States of America and European Union are consistent with the position that scientific names of organisms and their compilation in checklists, classifications or taxonomic revisions are not subject to copyright. Compilations of names, such as classifications or checklists, are not creative in the sense of copyright law. Many content providers desire credit for their efforts.
 
Conclusions: A ‘blue list’ identifies elements of checklists, classifications and monographs to which intellectual property rights do not apply. To promote sharing, authors of taxonomic content, compilers, intermediaries, and aggregators should receive citable recognition for their contributions, with the greatest recognition being given to the originating authors. Mechanisms for achieving this are discussed.
 
Original Source:  Patterson et al. Scientific names of organisms: attribution, rights, and licensing, BMC Research Notes 2014, 7:79. doi: 10.1186/1471-2105-12-S15-S1 

Full article available at: http://dx.doi.org/10.1186/1471-2105-12-S15-S1 

 





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Global Biodiversity Outlook 4: a mid-term assessment of progress towards the implementation of the Strategic Plan for Biodiversity 2011-2020

The 4th Global Biodiversity Outlook (GBO 4) was officially launched on 6 Oct 2014, during the opening day of the Twelfth Meeting of the Conference of the Parties to the Convention on Biological Diversity (COP 12) in Pyeongchang, Korea. Global Biodiversity Outlook (GBO) is the flagship publication of the Convention on Biological Diversity. It is a periodic report that summarizes the latest data on the status and trends of biodiversity and draws conclusions relevant to the further implementation of the Convention.

GBO 4 is a comprehensive report that serves as a mid-term analysis towards the 20 "Aichi Biodiversity Targets". The report states significant progress towards meeting some components of the majority of the Aichi  Biodiversity Targets. Some target components, such as conserving at least 17 per cent of terrestrial and  inland water areas, are on track to be met. However, in most cases this progress is seen as not sufficient to achieve the targets set for 2020, and additional action is required to keep the Strategic Plan for Biodiversity 2011–2020 on course. 

The full report can be accessed here: http://www.cbd.int/gbo4/

 





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DEST with new website and training programme for 2014-2015

The Distributed European School of Taxonomy (DEST) has now launched its new website and training programme for 2014-2015. DEST has been established by prominent taxonomists and other international partners during the EU funded project European Distributed Institute of Taxonomy (EDIT: 2006 – 2011). Since March 2011, the Royal Belgian Institute of Natural Sciences committed to sustain the continued management of DEST, organization of courses and related logistics.
 
To see the Modern Taxonomy programme offering intensive theoretical courses in various subjects go to:
 
Or have a look at the Expert-in-training programme enabling trainees to develop and strengthen skills through on-the-job-training:




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IPBES-3 –working documents, upcoming plenary and EU BON

The third plenary of Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services (IPBES) will be held from the 12.-17. January 2015 in Bonn, Germany where also EU BON partners will attend. The IPBES secretariat already released some information notes and documents for participants that plan to join the sessions. In addition to that, some working documents for IPBES-3 are released in the meantime, like the provisional agenda and others. There are also reports being published that are relevant for the work of biodiversity networks like EU BON. Interesting reports are for example the draft of the assessment on biodiversity and ecosystem services in Europe and Central Asia (where EU BON is mentioned as a relevant research network) and other working documents for the plenary.

Please find the documents under the following link that will guide you to the specific IPBES webpage: http://ipbes.net/plenary/ipbes-3.html#three





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New UN- report released on mobilizing data revolution for a sustainable development: "A world that counts"

A new report "A world that counts - Mobilising the Data Revolution for Sustainable Development" was recently published. The document points out the need for globally available and freely accessible data to monitor progress of Sustainable Development Goals (SDGs), to hold governments accountable and foster sustainable development. This issue needs to be solved in a timely manner, as the gaps between developed and developing countries, between information-rich and information-poor people are increasing. Furthermore, better integrated, timely and validated information can lead to better decision-making and real-time feedback to the citizens. However, still some challenges remain, and the report points out recommendations to overcome existing limitations (countries have poor data, data arrives too late, many issues are barely covered), e.g. through a global "Network of Data Innovation Networks" that connects both organizations and experts. 

The report was written by UN-IAEG, which is the United Nations Secretary-General’s Independent Expert Advisory Group on a Data Revolution for Sustainable Development and is available online here: http://www.undatarevolution.org/wp-content/uploads/2014/11/A-World-That-Counts.pdf





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Memorandum of Understanding signed: EU BON and Socientize

A Memorandum of Understanding (MoU) was signed at the second EU BON Stakeholder Roundtable on Citizen Science between Christoph Häuser, on behalf of EU BON, and Fermin Serrano Sanz, on behalf of the Citizen Science Project Socientize at the 27th of November 2014. The Roundtable on Citizen Science took place at the Museum für Naturkunde in Berlin, Germany and followed the General Assembly Meeting of the European Citizen Science Association. 

Signing the MoU: (left) Christoph Häuser, EU BON and (right) Fermin Serrano Sanz, Socientize

Socientize (Society as e-Infrastructure through technology, innovation and creativity) is a Citizen Science Project that was funded by the European Union. The project aims to coordinate agents involved in the citizen science process and to foster and promote the usage of citizen science infrastructures.  There are several linkages between the citizen science related work of EU BON and Socientize (e.g. policy recommendations for citizen science) and by signing the MoU, a further exchange and follow-ups were agreed.





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2nd WP4 meeting: linking environment to biodiversity

A second WP4 (Link environment to biodiversity: analyses of patterns, processes and trends) meeting was held on 8 & 9 December 2014 in Brussels, to discuss progress towards objectives and set plans for future development.

Hot topics during the meeting were: GBIF data: who will use them, and how; development and use of methodology; collaboration between WP4 and the relevant WP3 (Improving tools and methods for data analysis and interface) and WP5 (EU BON testing and validation of concepts, tools, and services); as well ways to translate WP4 results for the use of policy and practice.

Image: Participants at the meeting;  Credit: Dirk Schmeller

 





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SEP: More needs to be done to halt global biodiversity loss and meet Aichi targets

A new policy brief featured a recent issue of Science for Environment Policy highlights a new study suggesting that the Aichi biodiversity targets, set by the UN Convention on Biological Diversity, are unlikely to be achieved by 2020— despite some progress towards halting the global loss of biodiversity. The authors of the study call for policy responses to be strengthened if the ongoing loss of nature is to be stopped.

The loss of biodiversity affects the healthy functioning of ecosystems and the benefits they provide to people. The ongoing loss of the world’s natural diversity, which underpins all life, prompted Parties to the UN Convention on Biological Diversity (CBD) at the World Summit for Sustainable Development in 2002 to pledge reductions in the global decline in biodiversity by 2010.

The 2010 targets set by the CBD were missed. Consequently, a new set of goals to curb the loss of species and ecosystem services, supported by the 20 Aichi targets, were adopted by 193 nations in 2010. The Aichi targets, to be achieved by 2020, are part of the global Strategic Plan for Biodiversity 2011–2020.

A global panel of 51 experts, drawn from a wide range of institutions, has recently assessed mid-term progress towards meeting these targets. They based their assessment on an analysis of 55 indicators (for example, extent of wetlands) selected from 163 potential indicators, which are key measures of the world’s biodiversity. They built statistical models for each indicator, based on their status in 2010 and data trends and then projected changes to the indicators by 2020. The value for each indicator in 2010 was then compared with the projected value in 2020 to assess progression towards the 2020 Aichi targets.

Read more in the original SEP policy brief

Original Study: 

Tittensor, D.P., Walpole, M., Hill, S.L.L. et al. (2014) A mid-term analysis of progress toward international biodiversity targets. Science 346 (6206): 241- 244. DOI:10.1126/science.1257 484





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European Environment - State and Outlook 2015

The European Environment Agency has published its flagship report, the European Environment - State and Outlook 2015 (SOER 2015) .

It contains excellent online resources with detailed information, including downloadable graphs, tables and images. The report is compiled every five years and includes an assessment of trends and prospects, information on individual countries and regions, cross-country comparisons and the global context.

Aggregated level information on climate change, impacts, vulnerability and adaptation is included. 

Read more and find the report online here: http://www.eea.europa.eu/soer





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EU BON meets JRC

A team representing the EU BON project travelled to the Joint Research Centre (Ispra, Italy) on 23-24 April 2015 to meet with representatives of various JRC Units dealing with biodiversity.

Working in close collaboration with policy Directorate-General, the JRC’s mission is to provide EU policies with independent, evidence-based scientific and technical support, throughout the whole policy cycle. Gregoire Dubois (JRC), who seats the Advisory board of the EU BON project, chaired the two-day meeting intended to establish concrete links between EU BON and JRC. 

The objectives of the meeting were hence to become familiar with JRC’s biodiversity work, present the EU BON project to JRC, and above all identify overlapping interests, so as to develop cooperation between the EU BON project and JRC. Stimulated by a number of presentations from both sides, long discussions took place, mainly centred around how can JRC and EU BON work together to ensure the long-term presence of EU BON and its products.





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Article Alert: Indirect interactions among tropical tree species through shared rodent seed predators: a novel mechanism of tree species coexistence

A new aticle published in Ecology Letters  looks into the indirect interactions among tropical tree species through shared rodent seed predators. The reasearch is part of the work of EU BON postdoc Carol X. Garzon-Lopez.

Abstract: The coexistence of numerous tree species in tropical forests is commonly explained by negative dependence of recruitment on the conspecific seed and tree density due to specialist natural enemies that attack seeds and seedlings (‘Janzen–Connell’ effects). Less known is whether guilds of shared seed predators can induce a negative dependence of recruitment on the density of different species of the same plant functional group. We studied 54 plots in tropical forest on Barro Colorado Island, Panama, with contrasting mature tree densities of three coexisting large seeded tree species with shared seed predators. Levels of seed predation were far better explained by incorporating seed densities of all three focal species than by conspecific seed density alone. Both positive and negative density dependencies were observed for different species combinations. Thus, indirect interactions via shared seed predators can either promote or reduce the coexistence of different plant functional groups in tropical forest.

Carol X. Garzon-Lopez et. al. (2015) Indirect interactions among tropical tree species through shared rodent seed predators: a novel mechanism of tree species coexistence. Ecology Letters. doi: 10.1111/ele.12452





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Conservation Biology Special Section: "Conservation in Europe as a model for emerging conservation issues globally

A Special Section: "Conservation in Europe as a model for emerging conservation issues globally" is featured in the Early View module of Conservation Biology online. The section includes: 

Mapping opportunities and challenges for rewilding in Europe

Silvia Ceaușu, Max Hofmann, Laetitia M. Navarro, Steve Carver, Peter H. Verburg and Henrique M. Pereira

DOI: 10.1111/cobi.12533

Conservation in Europe as a model for emerging conservation issues globally

Luigi Boitani and William J. Sutherland

DOI: 10.1111/cobi.12530

The alignment of agricultural and nature conservation policies in the European Union

Ian Hodge, Jennifer Hauck and Aletta Bonn

DOI: 10.1111/cobi.12531

Scenarios of large mammal loss in Europe for the 21st century

Carlo Rondinini and Piero Visconti

DOI: 10.1111/cobi.12532

On how much biodiversity is covered in Europe by national protected areas and by the Natura 2000 network: insights from terrestrial vertebrates

L. Maiorano, G. Amori, A. Montemaggiori, C. Rondinini, L. Santini, S. Saura and L. Boitani

DOI: 10.1111/cobi.12535

The role of agri-environment schemes in conservation and environmental management

Péter Batáry, Lynn V. Dicks, David Kleijn and William J. Sutherland

DOI: 10.1111/cobi.12536

Framing the relationship between people and nature in the context of European conservation

John D. C. Linnell, Petra Kaczensky, Ulrich Wotschikowsky, Nicolas Lescureux and Luigi Boitani

DOI: 10.1111/cobi.12534





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EU BON General Meeting 2015: working toward building the European Biodiversity Observation Network

The annual EU BON General Meeting was successfully held from 1 to 4 June 2015 at the Clare College Conferencing, Cambridge, United Kingdom. 

The meeting was attended by a total of 85 participants with various organizational background and relation to EU BON. Among these were almost all EU BON alongside representatives of eight associate partners and many guests.

 

Participants at the EU BON General Meeting, 2015; Credit:  Dirk Schmeller

One of the highlights of the meeting was its very start with three inspiring keynote speakers. 

Among these, Bill Sutherland from the University of Cambridge started off to give an interesting speech about the progress and future plans on combining Biodiversity science and policy. Second was Gary Geller from the GEO secretariat who talked about GEO, GEOSS and GEO BON, its vision and goals. 
Later on, Johannes Peterseil from LTER-Europe shared some interesting thoughts about linking ecosystem research and earth observation through the cooperation between LTER-Europe and EU BON. 

During the meeting other relevant projects were also introduced to all participants. These were DataOne and Species 2000/Catalogue of Life and two new EU projects Ecopotential and Globis-B. 

The General Meeting included six thematic sessions on highly relevant EU BON topics, followed by many cross-task modules which led to better cooperation and communication between work packages and tasks. The exchange of experience gave new input to all work packages and set the milestones for the work ahead. 

Presentations from the meeting will be uploaded shortly.

 

PRESENTATIONS:

AGENDA - EU BON 3rd General Assembly

Keynote speakers: 

W.Sutherland - Biodiversity science and policy

G.Geller - GEO / GEOSS / GEOBON

J.Peterseil - Linking ecosystem research and earth observation

Other projects:

B.Wilson - DataONE

C.Flann - Species 2000 Catalogue of Life

C.Marangi - Ecopotential

W.Los - Globis-B

EU BON presentations:

C.Haeuser - EU BON core elements for an integrated biodiversity information system

U.Koljalg - Data mobilization strategy and show case

H.Saarenmaa - European biodiversity portal

Y.Gavish - Developing EU BON's site-specific portal

E.Regan - Stakeholder requirements

I.Geijzendorffer - Context of EU BON

 

Selection of pictures from the meeting:

 

  

 

 





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Monitoring Nature: Research Developments

A new issue in Science for Environment Policy "Monitoring Nature: Research Developments" provides a flavour of recent work by scientists in the area of biodiversity monitoring to highlight both up-to-date approaches to conservation and evaluation, and how long-term monitoring data could be used more effectively in management and policy decisions.

This Issue also includes topics such as monitoring to environmental policy, remote sensing, citizen science, DNA barcoding and more.

Find this issue on the SEP website here, or go straight to download.





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European Environmental Agency (EEA) Annual Report 2014

The European Environmental Agency (EEA) has published its Annual Report describing the work carried out by the EEA in 2014. The EEA annual report includes the EMAS environmental statement 2014.

The EEA aims to support sustainable development and to help achieve significant and measurable improvement in Europe's environment through the provision of timely, targeted, relevant and reliable information to policymaking agents and the public.

Download the report here.

 

 





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BESAFE/BIOMOT Conference: Motivations and arguments to act for biodiversity

The joint BESAFE/BIOMOT Conference "Motivations and arguments to act for biodiversity" took place on 10 & 11 June 2015 in Brussels, Les Ateliers des Tanneurs. The main objective of the conference was to present alternative ways to inspire innovative policy making to act for nature.

Based on four years of large-scale research by the two European projects, the conference aimed to define what could really work to motivate society to act for nature. The conference involved a wide audience in high-level keynotes, science-policy interface sessions, stakeholder meetings and panels. 

The joint event was also a platform for the BESAFE project Final Conference where the beta version of the BESAFE tool was presented and tested. The tool is planned as a user-friendly application where stakeholders can browse project results and background information to help them to help them to improve biodiversity argumentation.





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Earth Observation for Ecosystems Monitoring in Space and Time: A Special Issue in Remote Sensing

A new EU BON acknowledging special issue "Earth Observation for Ecosystems Monitoring in Space and Time: A Special Issue in Remote Sensing" published in the open access journal Remote Sensing provides a collection of  important researchers in the field, as well as the most challenging aspects of the application of remote sensing to study ecosystems. 

The special issue represents a stimulating discussion concerning innovative techniques/approaches that are based on remote sensing data, which are used for the study of ecosystems at different spatial and temporal scales. Research scientists and other subject matter experts submitted innovative and challenging papers that showed advances in several topics:
 
- estimating the spatial distribution of plant species richness by Light Detection and Ranging (LiDAR) and hyperspectral
data,
- assessing habitat quality of forest corridor based on NDVI,
- applying remote sensing to study (marine) coral ecosystems,
- identifying ecosystem functional types,
- distinguishing between different forest trunk size classes from remote sensing,
- detecting changes in forest patterns,
- applying light use efficiency models to estimate vegetation productivity,
- classifying grassland successional stages by airborne hyperspectral images
- proposing monitoring programs of grasslands based on multi-temporal optical and radar satellite images,
- estimating the potential of remote sensing to capture field-based plants phenology.
 
Original Source: 
 
Rocchini, D. (2015). Earth observation for ecosystems monitoring in space and time: a special issue in Remote Sensing. Remote Sensing, 7: 8102-8106. [IF: 3.180] [DOI | PDF]
 

 





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Data Management in Citizen Science Projects: share your experience!

It has been recognized that issues regarding the sustainability and interoperability of data collected by citizens hinder the re-usability and integration of these data across borders. The European Commission’s Joint Research Centre (JRC), is following up on these findings with a detailed study of interoperability arrangements, hosting and data management practices of Citizen Science projects. These activities include a survey designed to capture the state of play with regard to data management practices on the local, national and continental scales. The questions are especially inspired by the recently proposed data management principles of the Group on Earth Observations and those of the Belmont Forum.

Beyond the pure stocktaking and awareness raising, the results should establish a base line for prioritizing follow-up activities and measuring progress. The results will also inform the discussion on the potential roles of the European Commission – and especially the JRC – in Citizen Science.

After discussions with members of the European Citizen Science Association (ECSA) and the international Citizen Science Association (CSA), it was decided to open the scope of the questionnaire to the international community, so that non-EU and globally acting organizations could also benefit from the outcomes.

The survey will be open until 31 August 2015, and the results of the subsequent analysis will be available by the end of September.  We invite all those involved in Citizen Science projects to take the survey in order to provide us with invaluable information and insight into Citizen Science projects and best practice.

Take the Survey! >> https://ec.europa.eu/eusurvey/runner/CSDataManagement





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Nature commentary: Agree on biodiversity metrics to track from space

A new commentary "Environmental science: Agree on biodiversity metrics to track from space" published in Nature looks at why conservation and space agencies should agree on a definitive set of biodiversity variables and ways in which these will be tracked from space, to address conservation targets. The paper is a result of two Group on Earth Observations Biodiversity Observation Network (GEO BON) workshops which took place earlier this year.

Global biodiversity loss is intensifying. But it is hard to assess progress towards the Aichi Biodiversity Targets for 2011–20 set by the Convention on Biological Diversity (CBD). Target 5, for instance, aims to halve global deforestation rates by 2020; but reliable indicators for deforestation that can be monitored remotely have not been developed or agreed on. National biodiversity monitoring programmes differ widely, most data sets are inconsistent, and few data are shared openly.

Read more on the topic in the original commentary article.





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Strengthening cooperation on Earth observation and the environment

The European Environment Agency (EEA) and the European Space Agency (ESA) signed a Memorandum of Understanding, which sets out common objectives and areas of cooperation in the field of Earth observation and the environment over the coming years, announces a news item published on the EEA website.

Satellite data, such as that provided by the ESA, is a key component of environmental knowledge. The broader view satellite measurements offer of a particular subject at a particular time have improved environmental monitoring, leading to more evidence based policy and, ultimately, better environmental management.

The Memorandum of Understanding sets objectives for the exchange of scientific expertise and technical information between the agencies, providing the basis for mutual access to data and the promotion of joint activities.

Read more in the original news item here.





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A TEDx Trento talk on Extreme Biodiversity

What are the threats for biodiversity from global to local spatial scales? How might human beings succeed in fighting biodiversity loss?

EU BON partners, Annapaola Rizzoli and Duccio Rocchini give a TEDx talk on extreme biodiversity in space and time at 2200 metres in the Pale di San Martino on September 6, organized by TEDxTrento (soon will be also available with English subtitles).

Learn more here.





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Manuscript at the click of a button: Streamlined conversion of metadata for GBIF and DataONE into scholarly manuscripts

Data collection and analysis are at the core of modern research, and often take months or even years during which researchers remain uncredited for their contribution. A new plugin to a workflow previously developed by the Global Biodiversity Information Facility (GBIF) and Pensoft, and tested with datasets shared through GBIF and DataONE, now makes it possible to convert metadata into a manuscript for scholarly publications, with a click of a button.

Pensoft has currently implemented the feature for biodiversity, ecological and environmental data. Such records are either published through GBIF or deposited at DataONE, from where the associated metadata can be converted directly into data paper manuscripts within the ARPHA Writing Tool, where the authors may edit and finalize it in collaboration with co-authors and peers and submit it to the Biodiversity Data Journal (BDJ) with another click. Until now, the GBIF metadata have been exported into an RTF file. The new feature will be also part of future Pensoft projects, including the recently announced Research Ideas & Outcomes (RIO) Journaland the forthcoming Ecology and Sustainability Data Journal.

Metadata can be directly downloaded from the repository site (example with ONEMercury from DataONE) and then imported via the ARPHA Writing tool; Credit: ONEMercury, a tool by DataONE

The concept of the data paper was introduced in the early 2000's by the Ecological Society of America in order to solve issues of handling big data and to make the metadata and the corresponding datasets discoverable and citable. It was then brought to the attention of the biodiversity community in 2011 as a result of a joint GBIF and Pensoft project and later implemented in the routine publishing process in all Pensoft journals.

Since then, Pensoft has been working with GBIF, and subsequently DataONE to automate the process of converting metadata into a human-readable data paper format. The novel workflow means that with only a couple of clicks, publishers of datasets on either GBIF, DataONE or any other portal storing metadata in the same format, may submit a manuscript for peer-review and open access citable publication in BDJ.

The process is simple, yet it brings a lot of benefits. Publishing data does not only mean a citable publication and, thus, credit to the authors and the repository itself, but it also provides the option to improve your work and collect opinion though peer-review. BDJ also shortens the distance between "narrative (text)" and "data" publishing.

"Metadata descriptions (e.g., data about the data) are of primary importance for data dissemination, sharing and re-use, as they give essential information on content, scope, purpose, fitness for use, authorship, usage rights, etc. to any potential user. Authoring detailed metadata in repositories can seem a tedious process, however DataONE users will now benefit from direct export of already created metadata into data paper manuscripts and have even better exposure of their work through discoverability mechanisms and scholarly citations," commented Dr Amber Budden, DataONE Director for Community Engagement and Outreach

"It is great to reap the fruits of a process that started back in 2010. The automated streamlining of biodiversity data between repositories and publisher is an elegant feature that makes publishing a data paper an easy and rewarding process to crown scientists data collection efforts and ensure its use and re-use," added Prof. Lyubomir Penev, Managing Director of Pensoft.

More detailed information on how data authors could use the workflow can be found on the Pensoft blog.

References:

Chavan V, Penev L (2011) The data paper: a mechanism to incentivize data publishing in biodiversity science. BMC Bioinformatics. 12(Suppl 15):S2. DOI: 10.1186/1471-2105-12-S15-S2

The work has been partially supported by the EC-FP7 EU BON project (ENV 308454, Building the European Biodiversity Observation Network) and the ITN Horizon 2020 project BIG4(Biosystematics, informatics and genomics of the big 4 insect groups: training tomorrow's researchers and entrepreneurs), under Marie Sklodovska-Curie grant agreement No. 542241.

 





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Streamlined import of specimen & occurrence records into taxonomic manuscripts

Substantial amount of documented occurrence records is awaiting publication stored in repositories and data indexing platforms, such as the Global Biodiversity Information Facility (GBIF)Barcode of Life Data Systems (BOLD Systems), or Integrated Digitized Biocollections (iDigBio). In order to streamline the authoring process, save taxonomists time, and provide a workflow for peer-review and quality checks, Pensoft has introduced an innovative feature that makes it possible to easily import occurrence records into a taxonomic manuscript.

Prior to this development, Pensoft's ARPHA Writing Tool (AWT) only used the "upload from Excel" approach for this workflow. Although this method significantly simplified the process of importing materials and is actively used by the authors, it still required one extra transposition step.

Now, we added a new even more user-friendly option. By simply specifying an identifier (ID) in the relevant box, the new import plugin allows for occurrence data, stored at GBIF, BOLD systems, or iDigBio, to be be directly inserted into the manuscript. It all happens in the user-friendly environment of the AWT, where the imported data can be then edited before submission to the Biodiversity Data Journal.

Not having to retype or copy/paste species occurrence records, the authors save a lot of efforts. Moreover, they automatically import them in a structured Darwin Core format, which can be easily downloaded from the article text into structured data by anyone who needs the data for reuse after publication.

Another important aspect of the workflow is that it will serve as a platform for peer-review, publication and curation of raw data, that is of unpublished individual data records coming from collections or observations stored at GBIF, BOLD and iDigBio.

The work has been partially supported by the EC-FP7 EU BON project (ENV 308454, Building the European Biodiversity Observation Network) and the ITN Horizon 2020 project BIG4(Biosystematics, informatics and genomics of the big 4 insect groups: training tomorrow's researchers and entrepreneurs), under Marie Sklodovska-Curie grant agreement No. 542241.





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Postdoctoral position: Modelling of the land-sea nutrient transfer to the Mediterranean sea under different land management scenarios

Post-doctoral scientist position is open for the project "Towards an integrated prediction of Land & Sea Responses to global change in the Mediterranean Basin" (LaSeR-Med), which focusses on integrated socio-ecological modelling. The duration of the contract is initially one year, with a possible extension for a second year, depending on the initial results. The post-doc will be based within the Mediterranean Institute of marine and terrestrial Biodiversity and Ecology (IMBE) in Aix-en-Provence, France. The project is part of the Labex OT-Med (http://www.otmed.fr/).

Applicants should hold a doctoral degree in physics, chemistry, microbiology, geosciences, environmental sciences or a related field of science. They should be familiar with modelling biogeochemical interactions between ecosystems and capable to further develop existing numerical ecosystem models. Programming skills (C) and modelling experience are therefore mandatory. Knowledge of R and of Unix/Linux environment will be an advantage. The candidate should have good written and oral communication skills. For work, good skills in the English language will be essential.

The project:

Terrestrial and marine ecosystems are connected through groundwater, river discharge and nutrient outflows (especially N and P). River catchments in the Mediterranean are N-intensive regions, mostly due to intensive agriculture in the North and to crop N2 fixation or food & feed import in the South. The fraction of nutrient reaching the sea constitutes significant anthropogenic forcing of many marine biological processes. For simulating the dynamics of the first levels of the marine food web (from nutrients to jellyfishes), the ocean biogeochemical model, Eco3M-MED, used and developed by the Mediterranean Institute of Oceanography (MIO) within OT-Med, currently uses N and P measurements at river mouths, e.g. for the Rhône.

In order to estimate the impacts of global change on the functioning of marine ecosystems, the project aims at modeling the dependency of N and P outflows to the Mediterreanean sea toward land management. Land management is modelled as part of the agro-ecosystem model LPJmL (Bondeau et al., 2007), that has been especially adapted to the Mediterranean cropping systems (Fader et al., 2015). Among others, LPJmL simulates the daily carbon and water cycles, and the river discharges to the sea. Following existing approaches in the scientific literature, the post-doc will implement the nutrient N and P transfer in LPJmL, covering the net nutrient inputs to the river catchments by accounting for the processes occurring at the agro-ecosystem level (N2 biological fixation, fertilization, atmospheric deposition) and the net food and feed imports. Since only a minor fraction of the net nutrient inputs from Mediterranean basins reaches the sea, the retention along the nutrient cascade will have to be added to the LPJmL river routing scheme, similarly to the method used by the Riverstrahler model. Once the nutrient transfers have been introduced into LPJmL, simulations will be validated using current climate and land use forcing for comparisons with the existing observations from river outlets. Finally, future conditions will be assessed by using the model with scenarios of changing regional climate and land use / land management.

Your application:

Applications should contain a suitable motivation letter describing your anticipated role in the project, a CV, a list of scientific publications and the names of at least two scientists that can be contacted for references. They must be sent to Ms. Gabriela Boéri (gabriela.boeri@imbe.fr). Please prepare your application as a single file in pdf-format.

Questions about the project or the position can be directed to Dr. Alberte Bondeau (alberte.bondeau@imbe.fr). The position will be filled as soon as a suitable candidate has been found – work should start soon after that date. The salary and contract conditions will be determined according to standards set by Aix-Marseille University – questions in this regard can be directed to Sophie Pekar (pekar@otmed.fr).





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EU BON welcomes a new Associated Partner - MUSE (Museo delle Scienze)

We are happy to announce the latest member of our Associated Partners list - MUSE (Museo delle Scienze)

MUSE, or the Science Museum is an auxiliary body of the Autonomous Province of Trento. Its task is to interpret nature, starting from the mountains, using the eyes, tools, and applications of scientific research, taking advantage of the challenges of the contemporary world, stimulating scientific curiosity and the pleasure of knowledge, giving value to science, innovation, and sustainability. 

We look forward to more institutions and projects joining our Associated Partners family.





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The DEST taxonomy training programme 2015-2016

The Distributed European School of Taxonomy (DEST), an initiative under the CETAF umbrella and managed by RBINS, has launched its training programme for 2015-2016.  

Check out the Expert-in-training programme enabling trainees to develop and strengthen their taxonomic research skills through on-the-job-training and the Modern Taxonomy programme offering intensive theoretical courses in various subjects.

The Distributed European School of Taxonomy (DEST) was established within the framework of the EU funded project  European Distributed Institute of Taxonomy (EDIT) and under the umbrella of the Consortium of European Taxonomic Facilities (CETAF). The EDIT consortium agreement lasted from March 2006 until March 2011. Since then, the Royal Belgian Institute of Natural Sciences (RBINS) remains responsible for the continued management of DEST, organization of courses and related logistical matters. The DEST currently includes a network of around 100 training providers from 60 institutions.





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Europe for GEOSS: EU BON attracts high level attention at the GEO XII Plenary in Mexico City

The GEO-XII Plenary and Ministerial Summit, as well as many associated meetings and events were hosted by the Mexican Government and took place in Mexico City from 9 to 13 November 2015.

The five-day event brought together GEO member countries and organizations, as well as scientists and stakeholders from across the world to debate the next decade for GEO, and to discuss the latest developments in Earth Observation technologies and applications. The GEO-XII Plenary approved the GEO Strategic Plan 2016-2025, and the Summit endorsed a Mexico City Declaration (see: http://www.earthobservations.org/geo12.php).


Mexican music and folklore performances at the hosted conference dinner at GEO-XII; Credit: Hannu Saarenmaa

EU BON participated at GEO-XII and was represented at the European Commission Stand "Europe for GEOSS" with a poster and a short video clip. A real highlight was the visit by the European Commissioner for Research, Science and Innovation, Carlos Moedas. During his short visit, the Commissioner took specific interest in the project and spent some time discussing EU BON's relevance with the coordinator and his staff.

   
The EC stand "Europe for GEOSS" at GEO-XII, and discussions on EU BON with Commissioner Carlos Moedas; Credits:  Jose Miguel Rubio Iglesias (left), Helmut Staudenrausch (right)

EU BON was also presented during a dedicated side event entitled "The GEO Biodiversity Observation Network (GEO BON): Enhancing Biodiversity Observations and Products for User Needs". The project’s key products were introduced by the project coordinator Christoph Häuser and the workpackage 2 leader Hannu Saarenmaa.





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Butterfly monitoring: an important biodiversity loss indicator made easier to measure

Butterfly monitoring at local, national, regional, and global levels is the topic of the first of the GEO BON Technical Series reports produced to provide stakeholders with practical guidance for biodiversity conservation.

The report is jointly produced by GEO BON, EU BON, UNEP-WCMC, the German Centre for Integrative Biodiversity Research (iDiv) and Dutch Butterfly Conservation, as a follow up of a joint workshop, which took place in December 2014, to catalyse the process for the development of global butterfly monitoring guidelines and the creation of a new specialist butterfly monitoring group.

The report titled "Guidelines for Standardised Global Butterfly Monitoring" provides a suite of standard field protocols that can measure butterfly population change over various spatial and temporal scales, and that can be applied in any part of the world.

The importance of butterfly monitoring programmes lies in the fact that they provide information about population trends and changes that can be then used as indicators of biodiversity and environmental change outside of the butterfly context.

The guidelines are intended for scheme coordinators, i.e. people wishing to establish butterfly monitoring in any part of the world. The guidelines explain how to set up butterfly monitoring that can provide consistent and comparable results between sites and between years, consistent with international standards.

 

The ambition behind this new publication is that butterfly populations around the world are well monitored, thereby providing vital information on how these insect populations and other parts of biodiversity are changing. This information is important for feeding into local, national, regional, and global decision-making to help reduce biodiversity loss as well as raising awareness of butterflies and biodiversity in general.

 

Original Source:

Van Swaay, C., Regan, E., Ling, M., Bozhinovska, E., Fernandez, M., Marini-Filho, O.J., Huertas, B., Phon, C.-K., Kőrösi, A., Meerman, J., Pe’er, G., Uehara-Prado, M., Sáfián, S., Sam, L., Shuey, J., Taron, D., Terblanche, R., and Underhill, L. (2015). Guidelines for Standardised Global Butterfly Monitoring. Group on Earth Observations Biodiversity Observation Network, Leipzig, Germany. GEO BON Technical Series 1, 32pp.

 





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EU BON meets LTER Europe

From the 9th to 10th of December 2015 in Granada, Spain EU BON met representatives of LTER Europe. The aim of the meeting was to see where working programmes overlap and whether potential joint products can be identified. In addition the meeting was attended by GEO BON colleagues and included a vision of the upcoming GSEO initiative.

The first day was used to get to know each other and to present first ideas for joint developments. On the second day smaller groups concentrated on three possible joint working areas for the near future:

1) Extended test phase and application of WP3 tools and others

2) Technical/IT aspects, besides others, the use of DEIMS, PlutoF, datasets

3) Development of a manual/best practice for site-based long-term biodiversity observation and monitoring programme

Three working groups will be established and will start their work immediately.

 





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Aricle Alert: Combining internal and external motivations in multi-actor governance arrangements for biodiversity and ecosystem services

A new paper "Combining internal and external motivations in multi-actor governance arrangements for biodiversity and ecosystem services" published in the journal Environmental Science & Policy looks at ways to motivate actions for biodiversity conservation and ecosystem services provision. The paper is a result of the EU FP7 funded project BIOMOT.

Abstract: 

This paper analyses the possibility of building a mutually supportive dynamics between internally and externally motivated behaviour for biodiversity conservation and ecosystem services provision. To this purpose a face to face survey amongst 169 key actors of 34 highly successful and prominent biodiversity arrangements in seven EU countries was conducted. The main finding of the paper is the feasibility of combining inherently intrinsically motivated behaviours (providing enjoyment, pleasure from experimentation and learning, aesthetic satisfaction) and internalized extrinsic motivations (related to the identification with the collective goals of conservation policy) through a common set of governance features. Successful initiatives that combine internal and external motivations share the following features: inclusive decision making processes, a broad monitoring by "peers" beyond the core staff of the initiatives, and a context that is supportive for the building of autonomous actor competences. These findings are in line with the psycho-sociological theory of motivation, which shows the importance of a psycho-social context leading to a subjective perception of autonomy and a sense of competence of the actors.

Original Source: 

Tom Dedeurwaerdere, Jeroen Admiraal, Almut Beringer, Flavia Bonaiuto, Lavinia Cicero, Paula Fernandez-Wulff, Janneke Hagens, Juha Hiedanpää, Paul Knights, Erica Molinario, Paolo Melindi-Ghidi, Florin Popa, Urban Šilc, Nathalie Soethe, Tiina Soininen, Jose Luis Vivero, Combining internal and external motivations in multi-actor governance arrangements for biodiversity and ecosystem services, Environmental Science & Policy, Volume 58, April 2016, Pages 1-10, ISSN 1462-9011, http://dx.doi.org/10.1016/j.envsci.2015.12.003





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Article Alert: New TEAM network paper looks at standardized assessment of biodiversity trends in tropical forest protected areas

The Tropical Ecology Assessment and Monitoring (TEAM) network has the aim to measure and compare plants, terrestrial mammals, ground-dwelling birds and climate using a standard methodology in a range of tropical forests, from relatively pristine places to those most affected by people. TEAM currently operates in sixteen tropical forest sites across Africa, Asia and Latin America supporting a network of scientists committed to standardized methods of data collection to quantify how plants and animals respond to pressures such as climate change and human encroachment.

A recent TEAM network paper published in PLOS Biology deals with the standartization of methods in assessing biodiversity trends in tropical forest protected areas.

Abstract: 

Extinction rates in the Anthropocene are three orders of magnitude higher than background and disproportionately occur in the tropics, home of half the world’s species. Despite global efforts to combat tropical species extinctions, lack of high-quality, objective information on tropical biodiversity has hampered quantitative evaluation of conservation strategies. In particular, the scarcity of population-level monitoring in tropical forests has stymied assessment of biodiversity outcomes, such as the status and trends of animal populations in protected areas. Here, we evaluate occupancy trends for 511 populations of terrestrial mammals and birds, representing 244 species from 15 tropical forest protected areas on three continents. For the first time to our knowledge, we use annual surveys from tropicalforests worldwide that employ a standardized camera trapping protocol, and we compute data analytics that correct for imperfect detection. We found that occupancy declined in 22%, increased in 17%, and exhibited no change in 22% of populations during the last 3–8 years, while 39% of populations were detected too infrequently to assess occupancy changes. Despite extensive variability in occupancy trends, these 15 tropical protected areas have not exhibited systematic declines in biodiversity (i.e., occupancy, richness, or evenness) at the community level. Our results differ from reports of widespread biodiversity declines based on aggregated secondary data and expert opinion and suggest less extreme deterioration in tropical forest protected areas. We simultaneously fill an important conservation data gap and demonstrate the value of large-scale monitoring infrastructure and powerful analytics, which can be scaled to incorporate additional sites, ecosystems, and monitoring methods. In an era of catastrophic biodiversity loss, robust indicators produced from standardized monitoring infrastructure are critical to accurately assess population outcomes and identify conservation strategies that can avert biodiversity collapse.
 
Original Source: 
 
Beaudrot L, Ahumada JA, O'Brien T, Alvarez-Loayza P, Boekee K, Campos-Arceiz A, et al. (2016) Standardized Assessment of Biodiversity Trends in Tropical Forest Protected Areas: The End Is Not in Sight. PLoS Biol 14(1): e1002357. doi:10.1371/journal.pbio.1002357
 
You can also read more in the paper's commentary.




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PhD Offer: monioring biodiversity variables from satellite remote sensing using artificial intelligence methods

The Faculty of Geo-Information Science and Earth Observation (ITC) at the University of Twente has recently launched an investment programme to strengthen its international academic fields. For 11 pioneering-multidisciplinairy projects a PhD-position is made available, three of them already are filled in. The Department of Natural Resources (NRS) specialises in advanced spatial and temporal analysis and technique development for the environment as well as sustainable agriculture.

Job Description: 

The aim of this PhD project is to develop a cloud based artificial neural network for processing large remotely sensed data sets in order to generate essential biodiversity variables (as defined by Pereira et al. (2013) and Skidmore et al. (2015)). The PhD candidate, in combination with supervisors and programming support, will develop innovative artificial intelligence techniques for estimating biodiversity variables using massive cloud based data sets of satellite remotely sensed, in situ and ancillary data. Potential candidate biodiversity variables to be retrieved from satellite remote sensing include pertinent indicators of ecosystem function, ecosystem structure and species traits. The research will result in a PhD thesis.

For more information visit the official job offer.





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New EU BON article looks into incorporating spatial autocorrelation in rarefaction methods

A new EU BON acknowledged article looks at the recently introduced in scientific literature methods for constructing Spatially Explicit Rarefaction (SER) and their implication for ecologists and conservation biologist. The research was published in the journal Ecological Indicators.

Abstract: 

Recently, methods for constructing Spatially Explicit Rarefaction (SER) curves have been introduced in the scientific literature to describe the relation between the recorded species richness and sampling effort and taking into account for the spatial autocorrelation in the data. Despite these methodological advances, the use of SERs has not become routine and ecologists continue to use rarefaction methods that are not spatially explicit. Using two study cases from Italian vegetation surveys, we demonstrate that classic rarefaction methods that do not account for spatial structure can produce inaccurate results. Furthermore, our goal in this paper is to demonstrate how SERs can overcome the problem of spatial autocorrelation in the analysis of plant or animal communities. Our analyses demonstrate that using a spatially-explicit method for constructing rarefaction curves can substantially alter estimates of relative species richness. For both analyzed data sets, we found that the rank ordering of standardized species richness estimates was reversed between the two methods. We strongly advise the use of Spatially Explicit Rarefaction methods when analyzing biodiversity: the inclusion of spatial autocorrelation into rarefaction analyses can substantially alter conclusions and change the way we might prioritize or manage nature reserves.

Original Source: 

Bacaro, G., Altobelli, A., Camelletti, M., Ciccarelli, D., Martellos, S., Palmer, M.W., Ricotta, C., Rocchini, D., Scheiner, S.M., Tordoni, E., Chiarucci, A. (2016). Incorporating spatial autocorrelation in rarefaction methods: implications for ecologists and conservation biologists. Ecological Indicators, 69: 233-238. [5years-IF: 3.494] doi: http://dx.doi.org/10.1016/j.ecolind.2016.04.026





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DataONE welcomes its first South American Member Node

EU BON partner DataONE welcomes the Program for Research on Biodiversity (PPBio) Western Amazon as its first Member Node in South America. PPBio’s Western Amazon Node data repository contains data from surveys conducted in the framework of the Research Program in Biodiversity, the Center for Integrated Studies of Biodiversity in the Amazon and partner projects.

About PPBio:

The Research Program in Biodiversity (PPBio) is structured into three components:

  • Biological Collections - support and development of biological collections such as herbaria, museums and living collections;
  • Biological Inventories - biodiversity surveys, collecting sites, metadata and data for long-term studies;
  • Thematic Projects - developing methods for sustainable management of biodiversity and bioprospecting.

PPBio’s research is based on spatial standardization that is crucial for answering the questions raised by decision makers, the integration of biodiversity and physical sciences and on the incorporation of local people and traditional knowledge in biodiversity research and bio-prospecting. PPBio uses a flexible, standardized, modular and economical sampling method, RAPELD, which is compatible with other existing methods and a data policy which enable their datasets to be quickly made available to other researchers. PPBio has produced several free online guides to the flora and fauna of the region and the book "Biodiversity and Integrated Environmental Monitoring" which is essential reading for anyone with questions about biodiversity whether or they also intend to collect data.





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Sharing biodiversity data: EU BON recommended tools and practices published in RIO Journal

Due to the exponential growth of biodiversity information in recent years, the questions of how to mobilize such vast amounts of data has become more tangible than ever. Best practices for data sharing, data publishing, and involvement of scientific and citizen communities in data generation are the main topic of a recent report by the EU FP7 project Building the European Biodiversity Observation Network (EU BON), published in the innovative Research Ideas & Outcomes (RIO) journal.

The report "Data sharing tools for Biodiversity Observation Networks" provides conceptual and practical advice for implementation of the available data sharing and data publishing tools. A detailed description of tools, their pros and cons, is followed by recommendations on their deployment and enhancement to guide biodiversity data managers in their choices.

"We believe publishing this report in RIO makes a lot of sense given the journal's innovative concept of publishing unconventional research outcomes such as project reports. This feature provides projects like EU BON with the chance to showcase their results effectively and timely. The report provides a useful practical guide for biodiversity data managers and RIO gives the project an opportunity to share findings with anyone who will make use of such information", explains Prof. Lyubomir Penev, Managing Director of Pensoft and partner in EU BON.

The new report is the second EU BON contribution featured in a dedicated project outcomes collection in RIO. Together with the data policy recommendations it provides a comprehensive set of resources for the use of biodiversity data managers and users.

"We did our biodiversity data sharing tools comparison from the perspective of the needs of the biodiversity observation community with an eye on the development of a unified user interface to this data - the European Biodiversity Portal (EBP)", add the authors.

The scientists have identified two main challenges standing in front of the biodiversity data community. On the one hand, there is a variety of tools but none can as stand alone, satisfy all the requirements of the wide variety of data providers. On the other hand, gaps in data coverage and quality demand more effort in data mobilization.

"For the time being a combination of tools combined in a new work-flow, makes the most sense for EU BON to mobilize biodiversity data," comment the report authors on their findings. "There is more research to be done and tools to be developed, but for the future there is one firm conclusion and it is that the choice of tools should be defined by the needs of those observing biodiversity - the end user community in the broadest sense - from volunteer scientists to decision makers."

Original Source:

Smirnova L, Mergen P, Groom Q, De Wever A, Penev L, Stoev P, Pe'er I, Runnel V, Camacho A, Vincent T, Agosti D, Arvanitidis C, Bonet F, Saarenmaa H (2016) Data sharing tools adopted by the European Biodiversity Observation Network Project. Research Ideas and Outcomes 2: e9390. doi: 10.3897/rio.2.e9390





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Online consultation to fill gaps in the global indicator framework for the Aichi Biodiversity Targets

The Biodiversity Indicators Partnership (BIP) Secretariat is looking for indicators to fill gaps in the global suite of biodiversity indicators and allow a full understanding of progress towards globally agreed targets.

They are inviting experts and organisations to participate in an open online consultation to fill the gaps in the global indicator framework for the Strategic Plan for Biodiversity 2011-2020. Through this short online survey they want to hear about any existing indicators (both global and sub-global in scale), indicators under development, potentially useful datasets or key experts or organisations in the fields. The main focus is on indicators that respond to the gaps in the global framework, which are listed on the attached flyer, but they are also keen to hear about any other indicators that could potentially enhance the existing indicator suite.

The consultation is open until 30 June 2016. Further information on the consultation is available in the attached flyer, the BIP website http://www.bipindicators.net/gaps, and the CBD notification SCBD/OES/RH/KNM/85710.





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UNEP GEO-6 Assessment for the pan-European region released

As part of the new 6th Global Environment Outlook (GEO-6) UNEP has just released a separate Assessment for the pan-European region. The report provides an overview on the current state, trends and an outlook for the environment, and also highlights environmental factors that contribute to human health and well-being at the regional level.

Biodiversity is of central importance for human well-being and features prominently in the GEO-6 regional assessment. The state of biodiversity and ecosystems continue to give reason for major concerns and call for continued attention and increased efforts. The European Biodiversity Observation Network – EU BON – through its coordinating institution, the Museum für Naturkunde - Leibniz Institute for Evolution and Biodiversity Science contributed significantly to this report. 


Credits: UNEP/UNECE 2016, UNEP-WCMC based on IUCN (2014) data

The assessment for the pan-European region clearly indicates that biodiversity loss and ecosystem degradation is continuing in the region. Ongoing biodiversity decline and loss is particularly high in Eastern and Western Europe. Some positive developments and individual success stories offer lessons worth learning, for example developments of protected area networks such as Natura 2000 and the pan-European Emerald Network. However, an important challenge that needs urgent attention is improving availability and open access to comprehensive and integrated biodiversity data to support assessments and analysis, as well as planning and implementation of conservation efforts.

The full report can be found here: http://bit.ly/21q2ghL

UNEP press release: http://bit.ly/24A7sQN


For more information please contact:

Dr. Christoph Häuser christoph.häuser@mfn-berlin.de and Dr. Florian Wetzel florian.wetzel@mfn-berlin.de 
Museum für Naturkunde Berlin, Leibniz Institute for Evolution and Biodiversity Science, Invalidenstrassse 43, 10115 Berlin.





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New Book: Camera Trapping for Wildlife Research

Camera trapping is a powerful and now widely used tool in scientific research on wildlife ecology and management. It provides a unique opportunity for collecting knowledge, investigating the presence of animals, or recording and studying behaviour. Its visual nature makes it easy to successfully convey findings to a wide audience.

The new book provides a much-needed guide to the sound use of camera trapping for the most common ecological applications to wildlife research. Each phase involved in the use of camera trapping is covered:

- Selecting the right camera type 
- Set-up and field deployment of your camera trap 
- Defining the sampling design: presence/absence, species inventory, abundance; occupancy at species level; capture-mark-recapture for density estimation; behavioural studies; community-level analysis 
- Data storage, management and analysis for your research topic, with illustrative examples for using R and Excel 
- Using camera trapping for monitoring, conservation and public engagement.

Each chapter in this edited volume is essential reading for students, scientists, ecologists, educators and professionals involved in wildlife research or management.

Find out more in the promotional video.

About the authors

Francesco Rovero is an ecologist and conservation scientist with a PhD in animal ecology. He is currently the Curator for Tropical Biodiversity at MUSE Science Museum in Trento, Italy. 

Fridolin Zimmermann is a carnivore conservation scientist with a PhD on Eurasian lynx conservation and ecology. He is currently coordinator of the large carnivore monitoring in Switzerland at Carnivore Ecology and Wildlife Management (KORA).

Collectively they have nearly 30 years of professional experience in the use of camera trapping for wildlife research, and have worked on a range of species, habitat and study types.





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EU BON workshop "Biodiversity research for and by citizens in Eastern Europe: tools, information services and public engagement"

The EU BON workshop "Biodiversity research for and by citizens in Eastern Europe: tools, information services and public engagement" was organized to present the EU BON citizen science gateway, share accomplishments of the project, promote products, raise and discuss challenges of citizen science and facilitate networking between countries, especially eastern and central European countries.

There were 33 participants from Baltic countries and Finland and EU BON partners from Norway, Spain, Israel and Brussels. First day was showcasing the citizen science initiatives in Estonia, following best practice examples from EU BON consortium. During the second day the participants got a chance to learn the tools and methods for citizen science data management by ECSA and EU BON. This was followed by world cafe style discussion about the needs of citizen science initiatives and Pan-European citizen science gateway. One of the important conclusions for Baltic countries is that there is a need for stronger collaboration and supportive infrastructure to make citizen science more effective and also deliver accessible data to research community.

Some workshop participants also took part of Tartu Mini-BioBlitz on 29th June, first BioBlitz in Estonia. BioBlitz participants observed 239 species of animals, plants and fungi .

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Workshop agenda

Read a first hand report form the workshop in the two great blog posts by Egle Marija Ramanauskaite (a workshop participant from Lithuania):

http://seplute.tumblr.com/post/146841955105/citsci-overtakes-the-baltics-citizen-science

http://seplute.tumblr.com/post/146844410470/citizen-science-workshop-in-tartu-recap-of-day-2





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Article Alert: Has land use pushed terrestrial biodiversity beyond the planetary boundary? A global assessment

The planetary boundaries framework attempts to set limits for biodiversity loss within which ecological function is relatively unaffected. In a recent article in Science Newbold et al. present a quantitative global analysis of the extent to which the proposed planetary boundary has been crossed. 

Abstract: 

Land use and related pressures have reduced local terrestrial biodiversity, but it is unclear how the magnitude of change relates to the recently proposed planetary boundary ("safe limit"). We estimate that land use and related pressures have already reduced local biodiversity intactness—the average proportion of natural biodiversity remaining in local ecosystems—beyond its recently proposed planetary boundary across 58.1% of the world’s land surface, where 71.4% of the human population live. Biodiversity intactness within most biomes (especially grassland biomes), most biodiversity hotspots, and even some wilderness areas is inferred to be beyond the boundary. Such widespread transgression of safe limits suggests that biodiversity loss, if unchecked, will undermine efforts toward long-term sustainable development.

The study is available at http://dx.doi/10.1126/science.aaf2201

 





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Science, Business and Environment: a UNEP-GRID Conference

As a part of the celebrations of  a 25th Anniversary, GRID-Warsaw is holding an international conference Science, Business and EnvironmentThe conference will take place on 15 Sep 206 and is organized in partnership with the United Nations Environment Programme (UNEP). 

The main objective is to present the state, changes and threats (hot issues) for the pan-European continent, identified in the latest UNEP report, released as part of the Global Environment Outlook series. The "GEO-6 Assessment for the pan-European region" report was published in June 2016, and first time presented at a conference of Environment Ministers on June 8, 2016 in Batumi. The conference in Warsaw will be the first event during which the report will be presented to the broader community, as well as become the subject of discussion of experts representing different backgrounds and different countries.

EU BON is partner of the conference - the conference is also connected to relevant issues of EU BON, namely collecting, sharing, and utilizing data and geoinformation tools for environmental investigations and biodiversity assessments. These topics will fill the most of a special panel session dedicated to biodiversity and be also present at the plenary opening session Environmental changes in the pan-European region - current trends and challenges. Using environmental data in science, business and administration. 

For further information about the event: agenda, invited panelists, descriptions of sessions, registration form etc. please visit www.gridw.pl/geo6





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Article Alert: Measuring Rao's Q diversity index from remote sensing: An open source solution

Key in ensuring the effectiveness of conservation efforts and maintaining ecosystem health, measuring biodiversity can benefit greatly when remote sensing data comes into the equation. A new EU BON related paper, published in the journal Ecological Indicators, proposes open source solutions for measuring the important Rao's Q index, when it comes to remote sensing data.

Abstract: 

Measuring biodiversity is a key issue in ecology to guarantee effective indicators of ecosystem health at different spatial and time scales. However, estimating biodiversity from field observations might present difficulties related to costs and time needed. Moreover, a continuous data update for biodiversity monitoring purposes might be prohibitive. From this point of view, remote sensing represents a powerful tool since it allows to cover wide areas in a relatively low amount of time. One of the most common indicators of biodiversity is Shannon's entropy H′, which is strictly related to environmental heterogeneity, and thus to species diversity. However, Shannon's entropy might show drawbacks once applied to remote sensing data, since it considers relative abundances but it does not explicitly account for distances among pixels’ numerical values. In this paper we propose the use of Rao's Q applied to remotely sensed data, providing a straightforward R-package function to calculate it in 2D systems. We will introduce the theoretical rationale behind Rao's index and then provide applied examples based on the proposed R function.

Original Source: 

Rocchini, D., Marcantonio, M., Ricotta, C. (2017). Measuring Rao's Q diversity index rom remote sensing: an open source solution. Ecological Indicators, 72: 234-238. [5years-IF: 3.649] DOI:10.1016/j.ecolind.2016.07.039





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Article Alert: Biophysical Characterization of Protected Areas Globally through Optimized Image Segmentation and Classification

A new EU BON derived paper, publsihed recently in the journal Remote Sensing, introduces eHabitat+, a habitat modelling service supporting the European Commission’s Digital Observatory for Protected Areas.

Abstract:

Protected areas (PAs) need to be assessed systematically according to biodiversity values and threats in order to support decision-making processes. For this, PAs can be characterized according to their species, ecosystems and threats, but such information is often difficult to access and usually not comparable across regions. There are currently over 200,000 PAs in the world, and assessing these systematically according to their ecological values remains a huge challenge. However, linking remote sensing with ecological modelling can help to overcome some limitations of conservation studies, such as the sampling bias of biodiversity inventories. The aim of this paper is to introduce eHabitat+, a habitat modelling service supporting the European Commission’s Digital Observatory for Protected Areas, and specifically to discuss a component that systematically stratifies PAs into different habitat functional types based on remote sensing data. eHabitat+ uses an optimized procedure of automatic image segmentation based on several environmental variables to identify the main biophysical gradients in each PA. This allows a systematic production of key indicators on PAs that can be compared globally. Results from a few case studies are illustrated to show the benefits and limitations of this open-source tool.

Original Source: 

Martínez-López, J.; Bertzky, B.; Bonet-García, F.J.; Bastin, L.; Dubois, G. Biophysical Characterization of Protected Areas Globally through Optimized Image Segmentation and Classification. Remote Sens. 2016, 8, 780. DOI: 0.3390/rs8090780





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Citizen science might be voluntary but results are not always open: Recommendations to improve data openness

Being voluntary, citizen science work is often automatically assumed to also be openly available. Contrary to the expectations, however, a recent study of the datasets available from volunteers on the Global Biodiversity Information Facility (GBIF) prove to be among the most restrictive in how they can be used.

There is a high demand for biodiversity observation data to inform conservation and environmental policy, and citizen scientists generate the vast majority of terrestrial biodiversity observations. The analysis on GBIF showed that citizen science datasets comprise 10% of datasets on GBIF, but actually account for the impressive 60% of all observations.

Invaluable as a resource for conservationists and biodiversity scientists, however, these resources unfortunately often come with restrictions for re-use. Although the vast majority of citizen science datasets did not include a license statement, as a whole, they ranked low on the openness of their data.

The assumption that voluntary data collection leads to data sharing is not only not reflecting the real situation, but also does not recognize the wishes and motivations of those who collect data, nor does it respects the crucial contributions of these data to long-term monitoring of biodiversity trends.

In a recent commentary paper, published in the Journal of Applied Ecology, EU BON partners suggest ways to improve data openness. According to the researchers citizen scientists should be recognised in ways that correspond with their motivations, in addition its is advisable that organisations that manage these data should make their data sharing policies open and explicit.

Original Research:

Groom, Q., Weatherdon, L. & Geijzendorffer, I. (2016) Is citizen science an open science in the case of biodiversity observations? Journal of Applied Ecology. DOI: 10.1111/1365-2664.12767





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Presenting latest products and outcomes: a successful GEO XIII Plenary for EU BON

The GEO XIII Plenary in St. Petersburg  enjoyed a huge interest and support from many member governments, agencies and networks with around 400 registered participants this year.

Having taken place from 7-10 November 2016, the event featured a plenary, a number of side events and exhibition to give a chance to participants to meet up and discuss ideas and progress.

  
Left: The EU BON booth at the GEO exhibition - F. Wetzel, Ch. Häuser, H. Saarenmaa; Right: Director General  J.E. Smits and Christoph Häuser; Credits: F. Wetzel

On the sidelines of the Plenary the Director-General for Research and Innovation of the European Commission, Robert-Jan Smits, personally informed himself in a conversation with Dr. Christoph Häuser, project lead of EU BON on the success and performance of the EU BON project.

At the GEO Exhibition 45 participating organizations and agencies presented their current achievements in the realm of earth observation products. EU BON was part of the European Commission’s area where GEO-related projects were shown. The project showcased its latest products as well as provided live demonstrations by Dr. Hannu Saarenmaa of the beta-version of the European Biodiversity Portal.

Taking place just before the plenary, around 20 side events gave an interesting overview of current GEO-related projects and topics. One of the side events was targeted on citizen science and EU-funded projects, where EU BON’s coordinator Christoph Häuser presented the developments of the network with regards to its citizen science activities, particularly its developments of mobile apps for collecting citizen science data.


Christoph Häuser presenting  citizen science related activities of EU BON; Credit: F. Wetzel. 

Learn more about the portal in the relevant policy brief, or test it at: http://biodiversity.eubon.eu/

For more information about EU BON products and research, you can also watch the project video:

 

 





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New RIO contribution: Summary report and strategy recommendations for EU citizen science gateway for biodiversity data

A new report has been added to the dedicated EU BON Outputs Collection in the innovative RIO journal. The paper reviews biodiversity related citizen science in Europe, specifically the data mobilization aspect and gives an overview of citizen science related activities in the project EU BON.

In addition, recommendations for a Pan-European citizen science gateway and data mobilization efforts will be given, with the aim of filling in existing biodiversity data gaps. Also the EU BON citizen science gateway is described, which is a part of the European Biodiversity Portal (http://biodiversity.eubon.eu) with citizen science related products. 

Citizen science is a vital element for EU BON with regards to biodiversity information sources that provide data for research and policy-making. CS data are used by many research institutes, public organisations and local data portals. CS data offer volumes of field data, which would otherwise not be possible to collect with the limited resources of research institutes and agencies. Thus one of the main targets for EU BON is to make CS data available through various efforts, for example through networking and by using new technologies for data mobilisation. Overall, one of the main goals of a common EU citizen science Gateway is to integrate CS data for European biodiversity research. EU BON also seeks to develop a strategy for achieving this goal and encourages educational aspects of citizen science through networking and the development of tools.

Original Source:

Runnel V, Wetzel F, Groom Q, Koch W, Pe’er I, Valland N, Panteri E, Kõljalg U (2016) Summary report and strategy recommendations for EU citizen science gateway for biodiversity data. Research Ideas and Outcomes 2: e11563. https://doi.org/10.3897/rio.2.e11563





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Save the date for EU BON’s Final Project Meeting!

The Final EU BON Meeting is scheduled to take place from 14-16 March 2017 at the Royal Belgian Institute of Natural Sciences in Brussels and at the stunning backdrop of Botanic Garden in Meise.

EU BON invites all interested parties to mark the dates in their diaries and come to learn about the project’s results and outputs some of which are presented in this newsletter and some are yet to come.

More information is available on the Conference website: http://symposium.eubon.eu





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Setting temporal baselines for biodiversity could be an impediment for capturing the full impact of anthropogenic pressures

Published just recently, a new open access EU BON article discusses the need for additional research efforts beyond standard biodiversity monitoring to reconstruct the impacts of major anthropogenic pressures and to identify meaningful temporal baselines for biodiversity.

The article, published in Scientific Reports, reports on the temporal baselines that could be drawn from biodiversity monitoring schemes in Europe and compares those with the rise of important anthropogenic pressures.

 

With most biodiversity monitoring schemes initiated late in the 20th century, well after anthropogenic pressures had already reached half of their current magnitude, the team of scientists found that setting temporal baselines from biodiversity monitoring data would underestimate the full range of impacts of major anthropogenic pressures.

The authors stress that these limitations need to be explicitly acknowledged when designing management strategies and policies as they seriously constrain our ability to identify relevant conservation targets aimed at restoring or reversing biodiversity losses.

 

Find out more in the original research paper:

Mihoub J B, Henle K, Titeux N, Brotons L, Brummitt N A, Schmeller D S (2017) Setting temporal baselines for biodiversity: the limits of available monitoring data for capturing the full impact of anthropogenic pressures. Scientific Reports. http://dx.doi.org/10.1038/srep41591





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Biodiversity data, novel tools and services: EU BON presents key results at its Final Meeting

Taking place from 14 to 16 March 2017, the Final EU BON Meeting served as a platform to present key outputs from the FP7 EU-funded project EU BON " Building the European Biodiversity Observation Network" which aims to advance biodiversity knowledge by building a European gateway for biodiversity information and by integrating and harmonising a wide range of biodiversity data.

Hosted by the Royal Belgian Institute of Natural Sciences in Brussels and at the stunning backdrop of Botanic Garden in Meise, EU BON partners met with stakeholders from research, European policy and citizen science to learn about the project's results and outputs and to discuss the future of a European Biodiversity Observation Network.


Credit: Donat Agosti

EU BON represents a joint effort of 31 partners from 15 European countries, Israel, the Philippines, Brazil and more than 30 associated partners. The project worked on the establishment and adoption of new data standards, the development of tools, the integration of advanced techniques for data analysis and the development of new approaches and strategies for future biodiversity monitoring and assessment.


Group Photo; Credit: D. Schmeller

At the Final Meeting participants had the opportunity to learn about and test products and services developed by project members during the period 2012-2017. These include a range of tools for data analysis, such as GeoCAT -- a tool that performs rapid geospatial analysis to ease the process of Red Listing taxa and AquaMaps -- a toolkit that models the distribution and makes predictions of where aquatic species occur naturally. Another group of tools -- the GBIF Integrated Toolkit and ARPHA-BioDiv facilitates the process of data sharing, integration and publishing.

Among the services presented, worthy of special mention is the EU BON Unified Taxonomic Information Service (UTIS) that allows the running of a federated search on multiple European taxonomic checklists by scientific name or vernacular name strings. These include the Pan-European Species directories Infrastructure (EU-Nomen), the European Nature Information System (EUNIS), the Catalogue of Life, the World Register of Marine Species (WoRMS), the GBIF Checklist Bank and the Plazi Treatment Bank.

All these web applications are bound together under the umbrella of the EU BON European Biodiversity Portal, with highly relevant contributions to the aims of the Group on Earth Observation's Biodiversity Observation Network (GEO BON). Besides applied tools and software, the portal also serves as an online library for manuals, guidelines, factsheets, case studies, policy recommendations and other documents.

Learn more about these tools in our Final Brochure.

For live updates, follow EU BON on Twitter, or like us on Facebook. See the live Tweet feed from the meeting at #eubongm.

 

 





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EU BON's Final Brochure showcases selected outcomes from the project

EU BON presents its Final Brochure summarising the major outcomes of the EU-funded project EU BON "Building the European Biodiversity Observation Network" which aims to advance biodiversity knowledge by building a European gateway for biodiversity information and by integrating and harmonising a wide range of biodiversity data. Other goals of the project are the establishment and adoption of new data standards, the development of tools, the integration of advanced techniques for data analysis and the development of new approaches and strategies for future biodiversity monitoring and assessment.
 
The project represents a joint effort of 31 partners from 15 European countries, Israel, the Philippines, Brazil and more than 30 associated partners.
 
 
Download the full booklet here.