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COVID-19 Daily: Skin Manifestations, HCQ Heart Rhythm Risks

These are the coronavirus stories you need to know about today.




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COMMENTARY: COVID-19 Diary Week 3: I've Never Been More Emotionally Exhausted

After a week seeing cancer patients with COVID-19 as the inpatient consult attending, Don Dizon finds himself more emotionally exhausted than he's ever been before.




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European Society of Cardiology 2020 Congress Goes Virtual

COVID-19 has led the ESC to transition its annual congress to a virtual format; ESC 2020 Congress 'Challenging Times, Infinite Possibilities' will run online from August 29 to September 1.




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Evidence Builds Linking Anticoagulation to COVID-19 Survival

Data from a large US cohort suggest systemic anticoagulation may confer a survival benefit in hospitalized patients without a spike in bleeding events.




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For Kids With Genetic Condition, Statins May Be Lifesavers

Title: For Kids With Genetic Condition, Statins May Be Lifesavers
Category: Health News
Created: 10/16/2019 12:00:00 AM
Last Editorial Review: 10/17/2019 12:00:00 AM




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New Version of PubMed Central® Journal List Released

PMC released a new and improved journal list on March 31, 2009, after a comprehensive redesign for greater clarity and organization.

The new design not only combines the full-list and tabbed-list views of the previous version but also includes some new or updated features to provide users with a greater overview of the total PMC archive. Looking at this new list, you will find:

  1. An Expanded View of PMC journals that includes NIH Portfolio
  2. Special Collections
  3. A New “Participation Level” Journal Category
  4. Hide/Show Display Option for Predecessor Titles
  5. Article and Journal Search Feature

For more information, see the complete article in the May-June issue of the NLM Technical Bulletin: https://www.nlm.nih.gov/pubs/techbull/mj09/mj09_pmc_redesign.html




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New Search Function Released

You can now find embargoed articles and their corresponding PMCIDs through a recently released search option in the PMC Entrez database. Using the “Limits” tab, click in the field, “Show both free and embargoed articles” and refine your search by journal, author, date, article type, and/or tag term, as needed. Once you’re on the summary page, click on the “embargoed” tab at the top to find the articles in this category. You can then find the PMCID and date of availability at the bottom of the article citation, as indicated in the example below. Note: The PMC search option only includes articles with an initial embargo of up to 12 months. Articles with an embargo greater than 12 months are not compliant with the NIH Public Access Policy and will appear in search results only when the full text is free in PMC. For more information, see the article in the September-October issue of the NLM Technical Bulletin.




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PMC Canada's Manuscript Submission System Goes Live!

The PMC Canada manuscript submission system was released on April 28, 2010. The system will enable researchers funded by the Canadian Institutes of Health Research to deposit their peer-reviewed research publications, in compliance with CIHR's Policy on Access to Research Outputs.




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PMC Hits Two Million Mark!!

It's official—PMC has just become home to two million articles! The record-breaking article, which came from the American Journal of Medical Genetics Part B: Neuropsychiatric Genetics, became publicly available in the PMC archive on June 23. This new PMC milestone has occurred almost three years to the day since PMC reached its last one: the one-million article mark in June 2007. See also: PubMed Central Hits One Million Article Mark.




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New Version of PMC Help is Released

The PMC user's guide, PMC Help has been updated to include new and improved information on navigating the site as well as descriptions and instructions on using the new search functions, such as Limits and Advanced Search Builder. Further updates will also be forthcoming.




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PubReader – A New Presentation Style for PMC

NCBI has developed a new web presentation style called PubReader, which offers you an easier way to use your Web browser to read the articles in PMC. Designed particularly for enhancing readability and navigation on tablet and other small screen devices, PubReader can also be used on desktops and laptops and from multiple web browsers. For more information on PubReader, see the article in the November-December issue of the NLM Technical Bulletin.




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KoreaMed Synapse Adds PubReader as a Display Option

KoreaMed Synapse, a digital archive and reference linking platform of Korean medical journals, is now using NCBI’s new PubReader presentation style to display their full-text journal articles. KoreaMed’s database of 122 journals now includes a blue ‘PubReader’ icon for each full-text article. NCBI launched PubReader in December 2012 as a convenient new way to view full-text articles in PubMed Central on desktops as well as tablets and mobile devices. In tandem with the launch, NCBI made the code used to create PubReader freely available on GitHub.




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New Version of PubReader is Released

PMC has recently released an updated version of its PubReader view. The new version (1.2) includes a "search this page" feature that allows you to find specific terms within the article. The latest source code is also available from the GitHub repository.




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Three Million Articles are Now in PMC!!

As of February 21, 2014, PMC became home to three million articles! As listed on our home page, the content has been provided in part by 1441 full participation journals, 277 NIH Portfolio journals and 2470 selective deposit journals. For related information on PMC milestones, see these announcements from 2007 and 2010, respectively.




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Citation Exporter Feature Now Available

PMC is happy to announce the addition of a citation exporter feature. This feature makes it easy to retrieve either styled citations that you can copy/paste into your manuscripts, or to download them into a format compatible with your bibliographic reference manager software.

When viewing an Entrez search results page, each result summary will now include a "Citation" link. When, clicked, this will open a pop-up window that you can use to easily copy/paste citations formatted in one of three popular styles: AMA (American Medical Association), MLA (Modern Language Association), or APA (American Psychological Association). In addition, the box has links at the bottom that can be used to download the citation information in one of three machine-readable formats, which most bibliographic reference management software can import.

The same citation box can also be invoked from an individual article, either in classic view (with the "Citation" link among the list of formats) or the PubReader view, by clicking on the citation information just below the article title in the banner.

These human-readable styled citations, and machine-readable formats, will be available through a public API, and we will be providing more details about that in another announcement, on the pmc-utils-announce mailing list. Please subscribe to that list if you are interested.




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Public Access Expansion and PMC

Last month marked the third anniversary of the White House’s Office of Science and Technology Policy (OSTP) memorandum directing Federal agencies with more than $100 million in annual research and development (R&D) expenditures to develop plans for increasing public access to the results of the research they support, including scholarly publications. As a result of this directive, in 2015, PMC started providing support as a public access repository for funding agencies beyond the National Institutes of Health (NIH) and Howard Hughes Medical Institute (HHMI).

As of March 2015, the following additional agencies are using the NIH Manuscript Submission (NIHMS) system to facilitate the deposit in PMC of peer-reviewed manuscripts that fall under their public access policies:

  • Agency for Healthcare Research Quality (AHRQ/HHS)
  • Centers for Disease Control and Prevention (CDC/HHS),
  • Food and Drug Administration (FDA/HHS),
  • National Institute of Standards and Technology (NIST), and
  • U.S. Department of Veterans Affairs (VA)

Additionally, the following additional HHS and other federal agencies have announced public access plans and committed to using PMC as the repository for agency-funded publications:

  • Administration for Community Living (ACL/HHS)
  • Assistant Secretary for Preparedness and Response (ASPR/HHS)
  • Environmental Protection Agency (EPA)
  • National Aeronautics and Space Administration (NASA)

PMC will continue to update the list of participating funding agencies at Public Access and PMC as these agencies begin implementation of their policies.

More information about the current status of public access expansion as a result of the OSTP memo can be found on the White House blog.




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FTP service update to improve access to text mining collections

PMC has reorganized its FTP Service site for users interested in accessing the Text Mining Collections, which include the original Open Access (OA) Subset. New top-level FTP directories help users quickly locate the content available for bulk download that best suits their research needs. These directories include:

To make it easier for users to identify and comply with the different licenses that apply to OA articles, new file lists have been created and the file lists for individual OA articles now include a “license-type” field for each article. Similarly, the bulk packages of OA article text have been divided into two sets. One set comprises articles that may be used for commercial purposes (the Commercial Use Collection); the other contains articles that can be used only for non-commercial purposes. See the Open Access Subset page for details.

To allow regular users to transition to the new arrangement, the previous arrangement of files and directories will be maintained in parallel for at least four weeks (i.e., until the end of August 2016).




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PMC Bulk Download via FTP is Now Using New Naming Conventions

A large-scale update of the file names used for articles available via the PMC FTP service for bulk download was undertaken in early January 2017. The new file naming convention is PMCID-based (e.g., PMC4855680.tar.gz) rather than being built from article citation data (i.e., journal abbreviation_pub date_volume_issue_page). This update was made following user reports that the previous naming convention was resulting in missing contents in cases where citation data was duplicated across multiple articles. The new convention will ensure that file names are unique and that the corpus available via the FTP service is complete.




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Updated information on journal selection and participation agreements released

PMC has released expanded information about its selection process for journals that apply for participation. The current review process has been in place since November 2014 and focuses on the scientific rigor and editorial quality of each journal that applies to participate in PMC. Some of the attributes taken into account as part of this process include the article content, journal policies, language quality, and presentation of content. The same assessment considerations are used for reevaluation of currently participating journals. We encourage you to visit the Journal Selection for PMC page to learn more.

Publishers and journals interested in submitting an application to PMC are also encouraged to review our updated policies on agreement types. These policies provide the eligibility criteria for each type of participation agreement and should be considered alongside the pre-application requirements.

We hope these updates are informative and look forward to hearing your feedback.




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PMC Adds Support for Machine-Readable Clinical Trial Information

Machine-readability of scholarly outputs is critical to supporting large-scale analysis of the scientific literature. To that end, PMC’s Tagging Guidelines and internal processes have been updated to support the JATS4R recommendations for tagging clinical trial information. NLM encourages PMC-participating publishers, journals, and data providers to review this guidance. Please contact us at pubmedcentral@ncbi.nlm.nih.gov if you have any questions.




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New PubMed Updated: Homepage, User Guide, My NCBI Alerts and Collections, and More

​Several new features have been added to the new PubMed including an updated homepage, an online user guide, the CSV file format, My NCBI Filters, My Bibliography and Collections, and search integration with the MeSH and NLM Catalog databases.




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Webinar Recording "A New PubMed: Highlights for Information Professionals"

In this webinar for librarians and other information professionals you will preview the new, modern PubMed. The new PubMed, currently available at https://pubmed.gov/labs for testing, will be the default PubMed system in early 2020.







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The New PubMed Updated: Summary Display with Full Author List, Send to: Citation manager, PubMed Format, and More

The New PubMed Updated: Summary display includes the full author list and other citation details; Send to: Citation manager is available; RIS format is replaced by PubMed format; Search details include individual term translations; Citations in the Clipboard have been added to History as search number #0.




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Iliotibial (IT) Band Syndrome

Title: Iliotibial (IT) Band Syndrome
Category: Diseases and Conditions
Created: 4/18/2011 12:00:00 AM
Last Editorial Review: 3/10/2020 12:00:00 AM




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When Is Surgery Not Safe for Seniors?

Title: When Is Surgery Not Safe for Seniors?
Category: Health News
Created: 3/12/2020 12:00:00 AM
Last Editorial Review: 3/13/2020 12:00:00 AM




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Study Ties Brain Inflammation to Several Types of Dementia

Title: Study Ties Brain Inflammation to Several Types of Dementia
Category: Health News
Created: 3/18/2020 12:00:00 AM
Last Editorial Review: 3/18/2020 12:00:00 AM




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Aspergillus Infection (Aspergillosis)

Title: Aspergillus Infection (Aspergillosis)
Category: Diseases and Conditions
Created: 3/13/2020 12:00:00 AM
Last Editorial Review: 3/13/2020 12:00:00 AM




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Ear Infection Home Treatment

Title: Ear Infection Home Treatment
Category: Diseases and Conditions
Created: 1/25/2018 12:00:00 AM
Last Editorial Review: 3/21/2020 12:00:00 AM




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Raking Your Leaves to the Edge of Your Yard an Invitation to Ticks

Title: Raking Your Leaves to the Edge of Your Yard an Invitation to Ticks
Category: Health News
Created: 3/22/2020 12:00:00 AM
Last Editorial Review: 3/23/2020 12:00:00 AM




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Pneumonia More Deadly Than Hip Fractures for Hospitalized Seniors

Title: Pneumonia More Deadly Than Hip Fractures for Hospitalized Seniors
Category: Health News
Created: 4/23/2020 12:00:00 AM
Last Editorial Review: 4/24/2020 12:00:00 AM




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New Polio Vaccine Promising in Early Test

Title: New Polio Vaccine Promising in Early Test
Category: Health News
Created: 4/24/2020 12:00:00 AM
Last Editorial Review: 4/27/2020 12:00:00 AM




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Balanitis (Inflammation of the Head of the Penis)

Title: Balanitis (Inflammation of the Head of the Penis)
Category: Diseases and Conditions
Created: 6/24/2013 12:00:00 AM
Last Editorial Review: 11/22/2019 12:00:00 AM




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Is Balanitis Contagious?

Title: Is Balanitis Contagious?
Category: Diseases and Conditions
Created: 5/28/2015 12:00:00 AM
Last Editorial Review: 12/4/2019 12:00:00 AM




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8 Natural Remedies for Erectile Dysfunction (ED)

Title: 8 Natural Remedies for Erectile Dysfunction (ED)
Category: Doctor's & Expert's views on Symptoms
Created: 5/27/2000 12:00:00 AM
Last Editorial Review: 12/13/2019 12:00:00 AM




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Prescription-Strength Steroid Creams Sold Over-the-Counter Can Be Dangerous

Title: Prescription-Strength Steroid Creams Sold Over-the-Counter Can Be Dangerous
Category: Health News
Created: 1/23/2020 12:00:00 AM
Last Editorial Review: 1/24/2020 12:00:00 AM




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Research Finds Contagious Staph in Lupus-Related Skin Rashes

Title: Research Finds Contagious Staph in Lupus-Related Skin Rashes
Category: Health News
Created: 2/28/2020 12:00:00 AM
Last Editorial Review: 3/2/2020 12:00:00 AM




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Taking Steroids for Rheumatoid Arthritis, IBD? Your Odds for Hypertension May Rise

Title: Taking Steroids for Rheumatoid Arthritis, IBD? Your Odds for Hypertension May Rise
Category: Health News
Created: 3/23/2020 12:00:00 AM
Last Editorial Review: 3/24/2020 12:00:00 AM




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Vitamin D Might Aid Seniors' Recovery From Hip Fracture: Study

Title: Vitamin D Might Aid Seniors' Recovery From Hip Fracture: Study
Category: Health News
Created: 4/2/2020 12:00:00 AM
Last Editorial Review: 4/3/2020 12:00:00 AM




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How Does Cognitive Behavioral Therapy Treat Depression?

Title: How Does Cognitive Behavioral Therapy Treat Depression?
Category: Procedures and Tests
Created: 4/29/2020 12:00:00 AM
Last Editorial Review: 4/29/2020 12:00:00 AM




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Religion Helps Protect Against 'Deaths of Despair': Study

Title: Religion Helps Protect Against 'Deaths of Despair': Study
Category: Health News
Created: 5/6/2020 12:00:00 AM
Last Editorial Review: 5/7/2020 12:00:00 AM




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24 Best Foods for Blood Circulation

Title: 24 Best Foods for Blood Circulation
Category: Health and Living
Created: 4/9/2020 12:00:00 AM
Last Editorial Review: 4/9/2020 12:00:00 AM




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Low Blood Pressure (Hypotension)

Title: Low Blood Pressure (Hypotension)
Category: Diseases and Conditions
Created: 12/31/1997 12:00:00 AM
Last Editorial Review: 4/14/2020 12:00:00 AM




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Endometriosis Risk Can Be Predicted in Young Girls: Study

Title: Endometriosis Risk Can Be Predicted in Young Girls: Study
Category: Health News
Created: 3/10/2020 12:00:00 AM
Last Editorial Review: 3/10/2020 12:00:00 AM




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Birth Control Options (Types and Side Effects)

Title: Birth Control Options (Types and Side Effects)
Category: Diseases and Conditions
Created: 9/13/1999 12:00:00 AM
Last Editorial Review: 4/10/2020 12:00:00 AM




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AHA News: Make Mother's Day Last All Year With Wellness and Appreciation

Title: AHA News: Make Mother's Day Last All Year With Wellness and Appreciation
Category: Health News
Created: 4/29/2020 12:00:00 AM
Last Editorial Review: 4/30/2020 12:00:00 AM




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Lasix Side Effects, Warnings, and Drug Interactions

Title: Lasix Side Effects, Warnings, and Drug Interactions
Category: Medications
Created: 3/4/2020 12:00:00 AM
Last Editorial Review: 3/4/2020 12:00:00 AM




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Could ED Drugs Threaten Men's Vision?

Title: Could ED Drugs Threaten Men's Vision?
Category: Health News
Created: 2/7/2020 12:00:00 AM
Last Editorial Review: 2/7/2020 12:00:00 AM




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Circumcision Pros and Cons

Title: Circumcision Pros and Cons
Category: Procedures and Tests
Created: 12/4/1998 12:00:00 AM
Last Editorial Review: 2/27/2020 12:00:00 AM




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Circumcision Procedure

Title: Circumcision Procedure
Category: Procedures and Tests
Created: 12/15/1998 12:00:00 AM
Last Editorial Review: 2/28/2020 12:00:00 AM




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Health Tip: Understanding the Menopausal Transition

Title: Health Tip: Understanding the Menopausal Transition
Category: Health News
Created: 12/2/2019 12:00:00 AM
Last Editorial Review: 12/2/2019 12:00:00 AM