EU BON and CETAF informatics groups had an astronomically successful meeting at Digitarium in Joensuu, Finland, 17-20 March 2015. The event coincided with solar eclipse and show of the decade for northern lights.

Major progress in data standards for information exchange took place during the week when the Biodiversity Information Standards TDWG organisation announced ratification of five new terms for quantitative biodiversity data, which had been proposed by the EU BON project one year earlier. The new terms include, in particular, organismQuantity and sampleSizeValue. This allows for exchange of ecological data in much wider scale than what has been possible until now. The participants of the meeting applauded for this occasion.

Northern lights over Joensuu Science Park 2015-03-18. Photo: Riitta Tegelberg

The meeting included a training workshop on new data sharing tools, and working sessions for designing the EU BON portal, which will allow using biodiversity observation data in research.

The 40 attendees came from 18 different countries.

Participants at the meeting.

During the meeting the attendees also were given presentations and demonstrations of Digitarium's equipment and methods for high-performance digitisation.

The University of Cambridge invites for applications for a Research Associate to work on EU-BON, a major EU-funded research project, seeking to improve the use of biodiversity data in public policy. EU-BON will carry out research towards building a European gateway for biodiversity information, which will integrate a wide range of biodiversity data from on ground observations to remote sensing datasets and make it accessible for scientists, policy makers, and the public. The project is coordinated from the Berlin Natural History Museum with the University of Cambridge contribution being led Professor William Sutherland (Department of Zoology) and Dr Robert Doubleday (Centre for Science and Policy and Department of Geography). EU-BON started on 1 December 2012 and runs for 4.5 years.

The post The researcher will carry out research on how biodiversity data is currently used in European policy making and will contribute to analysis of the opportunities to increase its effective provision and use. Research methods are likely to combine qualitative and quantitative analysis and to focus on the use of biodiversity data in public policy contexts. The researcher will be expected to spend time working in both the Department of Zoology and the Centre for Science and Policy.

In addition to carrying out research on the use of biodiversity data in European policy making, the researcher will support Cambridge's contribution to EU BON as a whole. This will involve contributing to other workpackages as and when required. More information about EU BON can be found here:http://www.eubon.eu

Person Specification Applicants should have a PhD in a relevant field. Experience in both qualitative and quantitative analysis is desirable. Applicants should ideally have some first-hand experience of public policy processes and a willingness to travel within the European Union for research. Excellent organisational and communication skills will be essential in working as a successful part of this large, multi-partner and multinational team.

Any enquiries concerning the position can be made to Dr Robert Doubleday,rob.doubleday@csap.cam.ac.uk or Professor William Sutherland, w.sutherland@zoo.cam.ac.uk

Interviews for this post will take place on Thursday 18th June 2015.

To apply and for more information, please go to teh official job offer.

The ASEAN Centre for Biodiversity (ACB) publishes a monthly newsletter  to keep stakeholders informed of news about biodiversity concerns and efforts that are relevant to the ASEAN region, including about the work of ACB.

In their latest issue they feature articles about: 

• ASEAN-Japan cooperation on nature parks management
• Phl hosts international conservation financing conference
• ACB briefs German researchers on coastal ecosystem management

And many more news, features and updates. To read the newsletter, please go to: http://e-news.aseanbiodiversity.org/acb_eweb_mar15/#phl

The ASEAN Centre for Biodiversity (ACB) is an intergovernmental regional centre of excellence that facilitates cooperation and coordination among the members of ASEAN, and with relevant governments and organizations on the conservation and sustainable use of biological diversity.  Protecting Southeast Asia’s rich but highly threatened web of life is its main goal.

A new aticle published in Ecology Letters  looks into the indirect interactions among tropical tree species through shared rodent seed predators. The reasearch is part of the work of EU BON postdoc Carol X. Garzon-Lopez.

Abstract: The coexistence of numerous tree species in tropical forests is commonly explained by negative dependence of recruitment on the conspecific seed and tree density due to specialist natural enemies that attack seeds and seedlings (‘Janzen–Connell’ effects). Less known is whether guilds of shared seed predators can induce a negative dependence of recruitment on the density of different species of the same plant functional group. We studied 54 plots in tropical forest on Barro Colorado Island, Panama, with contrasting mature tree densities of three coexisting large seeded tree species with shared seed predators. Levels of seed predation were far better explained by incorporating seed densities of all three focal species than by conspecific seed density alone. Both positive and negative density dependencies were observed for different species combinations. Thus, indirect interactions via shared seed predators can either promote or reduce the coexistence of different plant functional groups in tropical forest.

Carol X. Garzon-Lopez et. al. (2015) Indirect interactions among tropical tree species through shared rodent seed predators: a novel mechanism of tree species coexistence. Ecology Letters. doi: 10.1111/ele.12452

The Swedish University of Agricultural Sciences offers a new position for Postdoctoral researcher in ecology: Spatial population dynamics at a species’ northern range margin at the Department of Ecology.

The department conducts empirical and theoretical research for sustainable forest and agricultural production and efficient biological conservation. Research on populations, communities, and ecosystems forms the foundation for studying the influence of land use and climate on animals, plants, soils nutrient status, and greenhouse gas balances. Solutions are sought that will mitigate climate change, preserve threatened species, benefit biological diversity and ecosystem services, and control pests in forest and agricultural landscapes as well as in urban areas.

Duties: The postdoc researcher will study spatial population dynamics in an insect at the northern margin of its global distribution, by taking advantage of a data from a long-term study of the butterfly Pyrgus armoricanus. The main purpose of the project is to understand how climate, habitat fragmentation and habitat quality influence the regional distribution and population dynamics of this butterfly, and to use this knowledge to predict population persistence and distribution in an altered climate and after changed land use. The successful candidate wull also analyze time-series data on population dynamics in relation to weather and habitat quality. There will also be opportunities to model future regional distribution or population persistence under scenarios of future land use and climate change.

Place of work: Uppsala

Form of employment: Temporary employment, 1 year.

Deadlines: June 1, 2015

For more information on requirements and how to apply, lease visit the official job offer page: http://www.slu.se/sv/om-slu/fristaende-sidor/aktuellt/lediga-tjanster/las-mer/?eng=1&Pid=1875

The  4th edition of the DEST course ‘BASICS of TAXONOMY’ will take place from 5 to16 October 2015 at the Sven Lovén Centre for Marine Sciences, Kristineberg, Sweden.

Taught by renowned experts in their field, the course topics are:

- DELTA
- Digital drawing
- Scientific illustration
- Scientific writing and communication
- Scratchpads, a tool to build, publish and share information on the web

Target audience: MSc students, PhD students, early career researchers

Thanks to funding of the Royal Swedish Academy of Sciences, this 2-weeks course is offered at a discounted rate of 550 EUR.

Fee includes accommodation and meals.                                                                                                                                          

More info: http://taxonomytraining.eu/content/basics-taxonomy-describing-illustrating-and-communicating-biodiversity

FishBase on the US and CA servers (www.fishbase.us and www.fishbase.ca) are now updated to version April 2015.

A Special Section: "Conservation in Europe as a model for emerging conservation issues globally" is featured in the Early View module of Conservation Biology online. The section includes: 

Mapping opportunities and challenges for rewilding in Europe

Silvia Ceaușu, Max Hofmann, Laetitia M. Navarro, Steve Carver, Peter H. Verburg and Henrique M. Pereira

John D. C. Linnell, Petra Kaczensky, Ulrich Wotschikowsky, Nicolas Lescureux and Luigi Boitani

DOI: 10.1111/cobi.12534

Sustainable governance of our biological resources demands reliable scientific knowledge to be accessible and applicable to the needs of society. To achieve this, the EU BON project aims to develop a European Biodiversity Observation Network that facilitates open access to biodiversity data of relevance to environmental policy, and to develop innovative platforms for sharing and conveying this information through visually effective and policy-relevant media.

As part of this endeavour, EU BON partners FishBase Information and Research Group (FIN), the Museum für Naturkunde Berlin (MfN), and the UNEP World Conservation Monitoring Centre collaborated to produce an infographic titled ‘Climate Change & Biodiversity: What may happen to bony fishes in the North Sea?’. This infographic explains the economic and ecological importance of bony fishes in the context of the North Sea. It also visualises potential changes to species diversity and composition over time, using habitat suitability and climate change predictions. These changes have been projected to 2100 based on modelled environmental conditions under the Intergovernmental Panel on Climate Change’s A2 emissions scenarios. The projections have direct policy relevance to Aichi Biodiversity Target 10 of the Convention on Biological Diversity, which seeks to understand trends in climatic impacts on community composition in ecosystems, and to thereby minimize these impacts.

The infographic was published on the 1^st June 2015 on page 26 of The Parliament Magazine’s ‘Green Week’ edition (Issue 413), which is distributed to all members of European Parliament, the European Commission, Presidency Office, Party political groups, and various other EU institutions, with over 50,000 readers worldwide. 

The annual EU BON General Meeting was successfully held from 1 to 4 June 2015 at the Clare College Conferencing, Cambridge, United Kingdom. 

The meeting was attended by a total of 85 participants with various organizational background and relation to EU BON. Among these were almost all EU BON alongside representatives of eight associate partners and many guests.

Participants at the EU BON General Meeting, 2015; Credit:  Dirk Schmeller

One of the highlights of the meeting was its very start with three inspiring keynote speakers. 

Among these, Bill Sutherland from the University of Cambridge started off to give an interesting speech about the progress and future plans on combining Biodiversity science and policy. Second was Gary Geller from the GEO secretariat who talked about GEO, GEOSS and GEO BON, its vision and goals. 
Later on, Johannes Peterseil from LTER-Europe shared some interesting thoughts about linking ecosystem research and earth observation through the cooperation between LTER-Europe and EU BON. 

During the meeting other relevant projects were also introduced to all participants. These were DataOne and Species 2000/Catalogue of Life and two new EU projects Ecopotential and Globis-B. 

The General Meeting included six thematic sessions on highly relevant EU BON topics, followed by many cross-task modules which led to better cooperation and communication between work packages and tasks. The exchange of experience gave new input to all work packages and set the milestones for the work ahead. 

Presentations from the meeting will be uploaded shortly.

PRESENTATIONS:

AGENDA - EU BON 3rd General Assembly

Keynote speakers: 

W.Sutherland - Biodiversity science and policy

G.Geller - GEO / GEOSS / GEOBON

J.Peterseil - Linking ecosystem research and earth observation

Other projects:

B.Wilson - DataONE

C.Flann - Species 2000 Catalogue of Life

C.Marangi - Ecopotential

W.Los - Globis-B

EU BON presentations:

C.Haeuser - EU BON core elements for an integrated biodiversity information system

U.Koljalg - Data mobilization strategy and show case

H.Saarenmaa - European biodiversity portal

Y.Gavish - Developing EU BON's site-specific portal

E.Regan - Stakeholder requirements

I.Geijzendorffer - Context of EU BON

Selection of pictures from the meeting:

A new issue in Science for Environment Policy "Monitoring Nature: Research Developments" provides a flavour of recent work by scientists in the area of biodiversity monitoring to highlight both up-to-date approaches to conservation and evaluation, and how long-term monitoring data could be used more effectively in management and policy decisions.

This Issue also includes topics such as monitoring to environmental policy, remote sensing, citizen science, DNA barcoding and more.

Find this issue on the SEP website here, or go straight to download.

A free GEO/Ramsar webinar titled "Wetlands, Biodiversity and the Role of Earth Observations" is taking place today - 18 June 2015. The webinar  is designed for anyone with an interest in or passion for biodiversity and wetlands - students, scientists, experts, or anyone with a general interest in one or more of these topics – who wants to learn from these vast global communities​.

This is the first of a series of planned webinars on the role of Earth observations in monitoring and sustaining biodiversity and wetlands. The webinars will be hosted by the GEO Biodiversity Observation Network (GEO BON) and GEO Water Community, together with the Ramsar Secretariat and will include leading experts from the global communities highly engaged in biodiversity, wetlands and Earth observations.

To watch the event and register follow the link: https://blbgroup.leadpages.net/webinar-wetlands/

The 9th GEO European Projects Workshop took place on 15 and 16 June 2015, in Copenhagen, Denmark. A special session dedicated to biodiversity and ecosystems was held as a part of the meeting, where EU BON and other topic relevant projects were presented.

The session was started by Gary Geller with an introduction and overview. Particularly the importance of the long-term sustainability of the projects and the linkages to the overall aims of GEO were stressed, as well as the opportunity of the session to find further synergies among the GEO-related projects.

Participants at the biodiversity and ecosystems sessions during the 9th GEO European Projects Workshop; Credit: Florian Wetzel

EU BON was presented at the meeting by the project coordinator Christoph Häuser, who outlined the core elements for an integrated biodiversity information system. There is the challenge to provide a sound framework to overcome the fragmentation of available biodiversity information to obtain better information for political decision making.  EU BON with its 31 partners tackles this challenge and its main objective is to serve as a European contribution to GEO BON.

Other projects presented during the session were EU H2020 projects ECOPOTENTIAL and GLOBIS‑B, both already in the list of associated partners of EU BON.  The third H2020 project presented here was SWOS, a Satellite-based Wetland Observation Service.

One of the major outcomes of the session was the agreement that further follow-ups of the discussions are needed and that the projects should have further exchange among each other.

A new EU BON acknowledging special issue "Earth Observation for Ecosystems Monitoring in Space and Time: A Special Issue in Remote Sensing" published in the open access journal Remote Sensing provides a collection of  important researchers in the field, as well as the most challenging aspects of the application of remote sensing to study ecosystems. 

The 2016 GEO BON Open Science Conference: "Biodiversity and ecosystem Services Monitoring for the 2020 Targets and beyond. Building on observations for user needs" will take place from 4 to 9 July 2016 in Leipzig, Germany. 

Biodiversity Science is facing enormous challenges as the pressures upon the earth’s biotic systems are rapidly intensifying and we are unlikely to reach the CBD 2020 Aichi Targets. But how far or close are we to reach the targets? The GEO BON Open Science Conference on "Biodiversity and Ecosystem Services Monitoring for the 2020 Targets and beyond" will assess this question. The conference is open to the wide scientific public and is sponsored and co-organized by iDiv, UFZ, SASCAL (others to come).

For more information please visit: http://conf2016.geobon.org

The Department of Conservation Biology at the Helmholtz Centre for Environmental Research (UFZ) is offering a full-time position for a Population Biologist / Conservation Biologist (Postdoc) focussing on assessing past and future trends in species under land use and climate change and improving the design of monitoring schemes. The position will be part of  EU BON. 

The Helmholtz Centre for Environmental Research (UFZ) with its 1,100 employees has gained an excellent reputation as an international competence centre for environmental sciences. We are part of the largest scientific organisation in Germany, the Helmholtz association. Our mission: Our research seeks to find a balance between social development and the long-term protection of our natural resources.

More information on the oficial job offer page: http://bit.ly/1MexC6Q

A new EU BON derived open access paper looking into Earth Observations (EO) and the Aichi Targets was recently published  in the journal Remote Sensing in Ecology and Conservation.

The paper reviews the ABTs and EBVs against direct and indirect, operational and emerging, EO data products. The review was conducted by consulting expert opinion and categorically rating the Targets based on the adequacy of currently available EO technology to build indicators per target. The potential RS-EBVs were also matched with their respective EO data products.

To summarize this information a monitoring framework is proposed where RS-EBVs are used to harmonize observations prior to the indicator stage. Potential obstacles to implementing this framework and challenges to its adoption by the wider science and policy community are discussed. Finally, upcoming satellite missions which could offer potential for assessing global biodiversity status and trends beyond the 2020 timeframe of the CBD's current Strategic Plan for Biodiversity are discussed.

Original Source: 

O'Connor B. et. al. (2015) Earth observation as a tool for tracking progress towards the Aichi Biodiversity Targets. Remote Sensing in Ecology and Conservation. DOI: 10.1002/rse2.4

The report ‘EU 2010 biodiversity baseline - adapted to the MAES typology (2015)’ presents a revised overview of the EEA's EU 2010 biodiversity baseline report.

The revision is necessary because the typology of ecosystems used in the 2010 report has since been altered by a working group of biodiversity experts. The revised report provides recalculated information on the state and trends of the different biodiversity and ecosystem components, based on the new typology of ecosystems.

Find the report here.

One of our recent associated partners, the EU project GLOBIS-B has published its first paper: "Towards global interoperability for supporting biodiversity research on essential biodiversity variables (EBVs)". You can find the article here.

Abstract: 

Essential biodiversity variables (EBVs) have been proposed by the Group on Earth Observations Biodiversity Observation Network (GEO BON) to identify a minimum set of essential measurements that are required for studying, monitoring and reporting biodiversity and ecosystem change. Despite the initial conceptualisation, however, the practical implementation of EBVs remains challenging. There is much discussion about the concept and implementation of EBVs: which variables are meaningful; which data are needed and available; at which spatial, temporal and topical scales can EBVs be calculated; and how sensitive are EBVs to variations in underlying data? To advance scientific progress in implementing EBVs we propose that both scientists and research infrastructure operators need to cooperate globally to serve and process the essential large datasets for calculating EBVs. We introduce GLOBIS-B (GLOBal Infrastructures for Supporting Biodiversity research), a global cooperation funded by the Horizon 2020 research and innovation framework programme of the European Commission. The main aim of GLOBIS-B is to bring together biodiversity scientists, global research infrastructure operators and legal interoperability experts to identify the research needs and infrastructure services underpinning the concept of EBVs. The project will facilitate the multi-lateral cooperation of biodiversity research infrastructures worldwide and identify the required primary data, analysis tools, methodologies and legal and technical bottlenecks to develop an agenda for research and infrastructure development to compute EBVs. This requires development of standards, protocols and workflows that are ‘self-documenting’ and openly shared to allow the discovery and analysis of data across large spatial extents and different temporal resolutions. The interoperability of existing biodiversity research infrastructures will be crucial for integrating the necessary biodiversity data to calculate EBVs, and to advance our ability to assess progress towards the Aichi targets for 2020 of the Convention on Biological Diversity (CBD).

Original Source:

W. Daniel Kissling et. al. (2015) Towards global interoperability for supporting biodiversity research on essential biodiversity variables (EBVs). Biodiversity. DOI: 10.1080/14888386.2015.1068709

The European Environment Agency (EEA) and the European Space Agency (ESA) signed a Memorandum of Understanding, which sets out common objectives and areas of cooperation in the field of Earth observation and the environment over the coming years, announces a news item published on the EEA website.

Satellite data, such as that provided by the ESA, is a key component of environmental knowledge. The broader view satellite measurements offer of a particular subject at a particular time have improved environmental monitoring, leading to more evidence based policy and, ultimately, better environmental management.

The Memorandum of Understanding sets objectives for the exchange of scientific expertise and technical information between the agencies, providing the basis for mutual access to data and the promotion of joint activities.

Read more in the original news item here.

ecoSERVICES is seeking a new host institution to establish its international project office from 2016. Expressions of interest will be examined with the scientific steering committee on the week of 30 November 2015.

Currently hosted at the Institut Méditerranéen de Biodiversité et d’Ecologie (IMBE) in France, ecoSERVICES is seeking a new host for its international project office from 2016

The ideal host institution works on scientific issues related to biodiversity, ecosystem services and human well-being, at various scales from local or national to global; and meets a few practical specifications via direct funding or in-kind support for establishment of a fully operational office.

Expressions of interest need to be sent to Karine Payet-Lebourges by email with subject "ecoSERVICES IPO – Offer".

Applications will be examined with the scientific steering committee on the week of 30 November 2015.

More information here.

The Royal Museum for Central Africa (RMCA) in Tervuren (Belgium) is part of the FishBase Consortium and responsible for the information on the fresh- and brackish water fishes of Africa in the FishBase database. Through an agreement with the Belgian Development Cooperation and as part of the FishBase program, the RMCA has five (5) grants available for a 3-month training program in the use of FishBase and the taxonomy of African fishes.

The training will have three subsets:

1. A detailed explanation of FishBase in all its aspects;
2. A training in the taxonomy of African fishes;
3. A case study based on data from FishBase or on taxa for which taxonomic problems have been encountered.

This course has been offered annually since 2005 and is held at the Royal Museum for Central Africa (Leuvensesteenweg 13, B-3080 Tervuren, Belgium). For more information and to apply for this three-month training grant, see: http://fishbase.africamuseum.be or www.fishbaseforafrica.org. Please note that for 2016, this course will be given in French only.

Questions? Contact Dimitri Geelhand de Merxem (dimitri.geelhand@africamuseum.be).

Post-doctoral scientist position is open for the project "Towards an integrated prediction of Land & Sea Responses to global change in the Mediterranean Basin" (LaSeR-Med), which focusses on integrated socio-ecological modelling. The duration of the contract is initially one year, with a possible extension for a second year, depending on the initial results. The post-doc will be based within the Mediterranean Institute of marine and terrestrial Biodiversity and Ecology (IMBE) in Aix-en-Provence, France. The project is part of the Labex OT-Med (http://www.otmed.fr/).

Applicants should hold a doctoral degree in physics, chemistry, microbiology, geosciences, environmental sciences or a related field of science. They should be familiar with modelling biogeochemical interactions between ecosystems and capable to further develop existing numerical ecosystem models. Programming skills (C) and modelling experience are therefore mandatory. Knowledge of R and of Unix/Linux environment will be an advantage. The candidate should have good written and oral communication skills. For work, good skills in the English language will be essential.

The project:

Terrestrial and marine ecosystems are connected through groundwater, river discharge and nutrient outflows (especially N and P). River catchments in the Mediterranean are N-intensive regions, mostly due to intensive agriculture in the North and to crop N2 fixation or food & feed import in the South. The fraction of nutrient reaching the sea constitutes significant anthropogenic forcing of many marine biological processes. For simulating the dynamics of the first levels of the marine food web (from nutrients to jellyfishes), the ocean biogeochemical model, Eco3M-MED, used and developed by the Mediterranean Institute of Oceanography (MIO) within OT-Med, currently uses N and P measurements at river mouths, e.g. for the Rhône.

In order to estimate the impacts of global change on the functioning of marine ecosystems, the project aims at modeling the dependency of N and P outflows to the Mediterreanean sea toward land management. Land management is modelled as part of the agro-ecosystem model LPJmL (Bondeau et al., 2007), that has been especially adapted to the Mediterranean cropping systems (Fader et al., 2015). Among others, LPJmL simulates the daily carbon and water cycles, and the river discharges to the sea. Following existing approaches in the scientific literature, the post-doc will implement the nutrient N and P transfer in LPJmL, covering the net nutrient inputs to the river catchments by accounting for the processes occurring at the agro-ecosystem level (N2 biological fixation, fertilization, atmospheric deposition) and the net food and feed imports. Since only a minor fraction of the net nutrient inputs from Mediterranean basins reaches the sea, the retention along the nutrient cascade will have to be added to the LPJmL river routing scheme, similarly to the method used by the Riverstrahler model. Once the nutrient transfers have been introduced into LPJmL, simulations will be validated using current climate and land use forcing for comparisons with the existing observations from river outlets. Finally, future conditions will be assessed by using the model with scenarios of changing regional climate and land use / land management.

Your application:

Applications should contain a suitable motivation letter describing your anticipated role in the project, a CV, a list of scientific publications and the names of at least two scientists that can be contacted for references. They must be sent to Ms. Gabriela Boéri (gabriela.boeri@imbe.fr). Please prepare your application as a single file in pdf-format.

Questions about the project or the position can be directed to Dr. Alberte Bondeau (alberte.bondeau@imbe.fr). The position will be filled as soon as a suitable candidate has been found – work should start soon after that date. The salary and contract conditions will be determined according to standards set by Aix-Marseille University – questions in this regard can be directed to Sophie Pekar (pekar@otmed.fr).

The European Commission has recently released publication focused on Earth Observation Research and EU BON is one of the successful projects featured in it. 

The publication titled "Investing in European success – A Decade of Success in Earth Observation Research and Innovation" looks at the benefits that Earth Observation brings to studying and protecting the environment.

The Earth’s atmosphere, oceans and landscapes are changing rapidly, with human activities being a major driver. Monitoring and modelling these changes are critical because they allow governments, society and the private sector to make informed decisions about climate, energy, food security, natural hazards, health and other societal challenges. To be effective, these responses must be grounded in comprehensive and timely information. More importantly, decision makers, managers and experts must have access to the information they need, when they need it and in a format which can be easily utilised.

To address this challenge, the intergovernmental Group on Earth Observations (GEO) has provided a voluntary framework since 2005 where 98 governments, the European Commission and 87 international organisations develop new projects and coordinate their strategies and investments in the field of Earth observation. The vision of GEO is to realise a future wherein decisions and actions for the benefit of humankind are informed by coordinated, comprehensive and sustained Earth observations and information. GEO’s main objective is to develop and implement the Global Earth Observation System of Systems (GEOSS). 

EU BON is an attempt to overcome these problems at European level and to contribute to the Group on Earth Observations’ (GEO) global initiative with the same aims – GEO BON.

Find the full publication here, EU BON can be found featured on pages 26 - 27.

We are happy to announce the latest member of our Associated Partners list - MUSE (Museo delle Scienze). 

MUSE, or the Science Museum is an auxiliary body of the Autonomous Province of Trento. Its task is to interpret nature, starting from the mountains, using the eyes, tools, and applications of scientific research, taking advantage of the challenges of the contemporary world, stimulating scientific curiosity and the pleasure of knowledge, giving value to science, innovation, and sustainability. 

We look forward to more institutions and projects joining our Associated Partners family.

October 2015 updates for both FishBase (www.fishbase.org) and SeaLifeBase (www.sealifebase.org) are now online!

The ASEAN Centre for Biodiversity (ACB) marked its 10^th year with the theme, "ACB and ASEAN Member States: A Decade of Cooperation on Biodiversity Conservation."  The celebration covered a number of activities on 2 October 2015 at the College of Forestry and Natural Resources, University of the Philippines, Los Banos, Philippines. These included the groundbreaking ceremony of the new ACB headquarters; Tree Growing Activity at the "Tree World"; awarding of the Zooming in on Biodiversity Photo Contest Winners; and "Nawa'y Muli Tayong Makauwi," a musical theatre show on biodiversity conservation. 

The event provided ACB with an opportunity to promote the milestones of the Centre, and a venue for the ASEAN Member States, ACB and its partner organizations and countries to get together and further strengthen collaborations and reaffirm commitments to conserve the rich biodiversity of the ASEAN region.

Find more updates in the latest ASEAN Biodiversity Bulletin.

From 9 to 11 November in Vienna, Austria the EU H2020 project Detecting changes in essential ecosystem and biodiversity properties – towards a Biosphere Atmosphere Change Index: BACI has organised a special workshop titled "Remote sensing applications related to land use/change" with the aim to facilitate co-design and co-production of knowledge with regard to innovative applications of remote sensing products.

EU BON project partner Duccio Rocchini was among the invited lecturers at the event. His talk titled "Like in a Rubik’s cube: Recomposing Biodiversity Information by Remote Sensing Data" introduced some experience from EU BON.

The overarching objective of BACI is to tap into the unrealized potential of existing and scheduled space-borne Earth observation data streams to detect changes in ecosystem functioning and services that have repercussions for essential biodiversity variables, land use potentials, and land-atmosphere interactions.

Europe's main zoological taxonomic index - Fauna Europaea presents its updated and modernized website at http://www.fauna-eu.org/. Scientific names and distributions of all living, currently known, multicellular, European land and freshwater animal species are available in one authoritative database.Fauna Europaea offers key information on:

• Taxonomical index for European land and freshwater species
• Information on the geographical distribution of many species
• Database on taxonomic experts in Europe
• References on literature of European species taxonomy and distribution
• A browsable taxon tree

Fauna Europaea provides access to its rich and quality-checked data via this public web portal that also links to other key biodiversity services. It is installed as a taxonomic backbone in a wide range of biodiversity services and actively contributes to biodiversity informatics innovations in various initiatives and EC programs. Fauna Europaea started in 2000 as an EC funded FP5 project and provides a unique taxonomic reference for many user-groups such as scientists, governments, industries, nature conservation communities and educational programs. Fauna Europaea was formally accepted as an INSPIRE standard for Europe, as part of the European Taxonomic Backbone established in PESI. Today it is hosted by the Museum für Naturkunde in Berlin.

A new special issue titled "Connecting the Dots: Integrating Biodiversity Observations to Better Track the CBD 2020 Targets" looks at Biodiversity Observatios and the ways that can be integrated into the CBD 2020 targers, for better results in biodiversity conservation.

The issue, where a number of GEO BON partners are authors, explores a wide variety of aspects of Biodiveristy Observations, including data management, integration of in-stiu data, the roles and contricutions of BONs, contextualization with the UN's Sustainable Developmen Goals, and many more.

For more information and to see what is included in the Special Issue, click here.

The Museum für Naturkunde and the Botanic Garden and Botanical Museum are honored to be hosting the 31st Annual Meeting of the Society for the Preservation of Natural History Collections (SPNHC) as well as the 2nd International Conference on Biodiversity Biobanking of the Global Genome Biodiversity Network (GGBN) in Berlin from June, 20 to June, 25, 2016. The conferences will be held in parallel at the andel’s Hotel Berlin, Landsberger Allee.

• SPNHC conference web site: http://www.spnhc2016.berlin/, conference theme: "Green Museum – How to practice what we preach?"
• GGBN conference web site: https://meetings.ggbn.org/conference/ggbn/2016/index, conference theme: "Meeting the Challenge: How to Preserve a Cross-Section of the Tree of Life"

The registration for both conferences is now open. Please check the conference web sites for information on the conference program, field trips, social events, accommodation, registration and abstract submission. All social events and field trips as well as the opening session on Tuesday are joint events for attendees of both conferences. During lunch and coffee breaks one will have the chance to visit the vendor booths and chat with attendees of both conferences. The sessions of both conferences cover complementary topics to avoid duplications.

A new article published in the Journal of Marine Science and Engineering looks at how Aphia, the core platform that underpins the World Register of Marine Species (WoRMS),  can Serve the taxonomic community and the field of biodiversity informatics.

Abstract

The Aphia platform is an infrastructure designed to capture taxonomic and related data and information, and includes an online editing environment. The latter allows easy access to experts so they can update the content of the database in a timely fashion. Aphia is the core platform that underpins the World Register of Marine Species (WoRMS) and its more than 80 related global, regional and thematic species databases, but it also allows the storage of non-marine data. The content of Aphia can be consulted online, either by individual users or via machine-to-machine interactions. Aphia uses unique and stable identifiers for each available name in the database through the use of Life Science Identifiers (LSIDs). The system not only allows the storage of accepted and unaccepted names, but it also documents the relationships between names. This makes it a very powerful tool for taxonomic quality control, and also allows the linking of different pieces of information through scientific names, both within the Aphia platform and in relation to externally hosted databases. Through these LSIDs, Aphia has become an important player in the field of (marine) biodiversity informatics, allowing interactions between its own taxonomic data and e.g., biogeographic databases. Some applications in the field of biodiversity informatics encompass the coupling of species traits and taxonomy, as well as the creation of diverse, expert validated data products that can be used by policy makers, for example. Aphia also supplies (part of) its content to other data integrators and the infrastructure can be used to host orphan databases in danger of being lost.

Original Source: http://www.mdpi.com/2077-1312/3/4/1448/htm

A new paper "Combining internal and external motivations in multi-actor governance arrangements for biodiversity and ecosystem services" published in the journal Environmental Science & Policy looks at ways to motivate actions for biodiversity conservation and ecosystem services provision. The paper is a result of the EU FP7 funded project BIOMOT.

Abstract: 

This paper analyses the possibility of building a mutually supportive dynamics between internally and externally motivated behaviour for biodiversity conservation and ecosystem services provision. To this purpose a face to face survey amongst 169 key actors of 34 highly successful and prominent biodiversity arrangements in seven EU countries was conducted. The main finding of the paper is the feasibility of combining inherently intrinsically motivated behaviours (providing enjoyment, pleasure from experimentation and learning, aesthetic satisfaction) and internalized extrinsic motivations (related to the identification with the collective goals of conservation policy) through a common set of governance features. Successful initiatives that combine internal and external motivations share the following features: inclusive decision making processes, a broad monitoring by "peers" beyond the core staff of the initiatives, and a context that is supportive for the building of autonomous actor competences. These findings are in line with the psycho-sociological theory of motivation, which shows the importance of a psycho-social context leading to a subjective perception of autonomy and a sense of competence of the actors.

Original Source: 

Tom Dedeurwaerdere, Jeroen Admiraal, Almut Beringer, Flavia Bonaiuto, Lavinia Cicero, Paula Fernandez-Wulff, Janneke Hagens, Juha Hiedanpää, Paul Knights, Erica Molinario, Paolo Melindi-Ghidi, Florin Popa, Urban Šilc, Nathalie Soethe, Tiina Soininen, Jose Luis Vivero, Combining internal and external motivations in multi-actor governance arrangements for biodiversity and ecosystem services, Environmental Science & Policy, Volume 58, April 2016, Pages 1-10, ISSN 1462-9011, http://dx.doi.org/10.1016/j.envsci.2015.12.003

The Tropical Ecology Assessment and Monitoring (TEAM) network has the aim to measure and compare plants, terrestrial mammals, ground-dwelling birds and climate using a standard methodology in a range of tropical forests, from relatively pristine places to those most affected by people. TEAM currently operates in sixteen tropical forest sites across Africa, Asia and Latin America supporting a network of scientists committed to standardized methods of data collection to quantify how plants and animals respond to pressures such as climate change and human encroachment.

A recent TEAM network paper published in PLOS Biology deals with the standartization of methods in assessing biodiversity trends in tropical forest protected areas.

Abstract: 

EU BON has signed memoranda of understanding with almost thirty institutions and projects from across Europe and outside to state its desire for collaboration and exchange of expertise. Among the early partners in this list is the LTER-Europe group, focussed on the integration of scientific research  and ecosystem research approaches, including the human dimension.

Dr. Mark Frenzel who took part in the EU BON Third Stakeholder roundtable in December 2015, gives an overview of his impressions from the meeting as well as his ideas on the co-work between LTER-Europe and EU BON.

Credit: Florian Wetzel

Q: The LTER-Europe network looks at conceptualizing Long-Term Ecosystem Research (LTER) as an essential component of world-wide efforts to better understand ecosystems. How is the network planning to achieve this?

A: This is / will be achieved mainly by funded project work. Actually the H2020 eLTER project is the most important backbone, an ESFRI eLTER initiative is running too. In terms of content there are several challenges which need to be addressed: (1) Harmonisation in terms of what and how is being measured at LTER sites, (2) collection and representation of metadata about sites, actors and data sets within the web tool DEIMS, (3) open access of data and DOI registration of data sets, (4) considering the human component as a major driver for changes in ecosystems by including socio-economy and socio-ecology in the LTER approach.      
 

Q: How would EU BON and its planned European biodiversity portal be beneficial to LTER-Europe and its aims in the next years?

A: Biodiversity is not the only, but an important focus within LTER. It depends on the services and benefits connected with this portal and its long-term perspective. The most important added value I would see in an elaborated framework-based agreement on the set of  "essential biodiversity variables" which will be a compromise between importance and feasibility. This selection process should be well tuned with the relevant players in this field.
 

Q: The LTER-Europe network includes several hundreds of sites that are collecting large amounts of data  – how can this data be used for improving our knowledge of biodiversity, particularly for policy-relevant questions?

A: The big advantage (and potential) of LTER-Europe sites is the coverage in terms of geography and bioms, the general shortcoming is in the heterogeneous reasons why these sites have been set up (e.g. for monitoring air pollution) and that there is no targeted funding (in terms of a specific research question) for all sites.

Not all sites are dealing with biodiversity data. First, suitable sites need to be selected according to metadata in DEIMS (https://data.lter-europe.net/deims/). Second, data sets according to fitting topics have to be compiled (perhaps no easy task, as datasets up to now are not exhaustively documented). Site managers of representative sites (depending on the question to be addressed) could be motivated to create a common standardised data sets (needs external funding depending on the resources necessary for the task or at least a very attractive research question) responding to e.g. policy needs. Moreover, the long-term knowledge of site coordinators about the development and the important drivers of change at their sites (e.g. by assessing ecosystem services) comprises valuable meta information about the context of data sets.

Data obtained from the sites could potentially help with policy-relevant questions like status of endangered species or status of ecosystem service relevant system parameters which could be extracted from LTER sites.
 

Q: According to you what are the next three most urgent step in order to achieve better understanding of ecosystem services and their benefits for policy, economics and society?

A: (1) reliable data and suitable scale of data, (2) understanding the effect of scale on ecosystem services, (3) make use of large networks to approach this issue, bring the results down to a scale understandable for the layman.
 

About LTER-Europe:

Long-Term Ecosystem Research (LTER) is an essential component of world-wide efforts to better understand ecosystems. LTER contributes to the knowledge base informing policy and to the development of management options in response to the Grand Challenges under Global Change. From the beginning (around 2003) the design of LTER-Europe has focussed on the integration of natural sciences and ecosystem research approaches, including the human dimension. LTER-Europe was heavily involved in conceptualizing socio-ecological research (LTSER). As well as LTER Sites, LTER-Europe features LTSER Platforms, acting as test infrastructures for a new generation of ecosystem research across European environmental and socio-economic gradients.

The Faculty of Geo-Information Science and Earth Observation (ITC) at the University of Twente has recently launched an investment programme to strengthen its international academic fields. For 11 pioneering-multidisciplinairy projects a PhD-position is made available, three of them already are filled in. The Department of Natural Resources (NRS) specialises in advanced spatial and temporal analysis and technique development for the environment as well as sustainable agriculture.

Job Description: 

For more information visit the official job offer.

MUSE (Museo delle Scienze) joined EU BON's Associated Partners family in November 2015. We are now happy to present some more information about the museum and its initiative - the TEAM network.

MUSE is involved in biodiversity monitoring both locally in Trento Province, southeastern Alps, and globally. In particular, its Tropical Biodiversity Section runs a long-term biodiversity research and monitoring programme in the Udzungwa Mountains of Tanzania, an outstanding site for biological diversity and endemism. In 2009, this site became the first in Africa to enter the TEAM Network, a global programme for the standardized monitoring of biodiversity across the tropical moist forests.

 
Camera trap images from the MUSE site in Tanzania; Credit: MUSE – Science Museum 

Started in 2002 by Conservation International (CI), the Tropical Ecology Assessment and Monitoring (TEAM) Network (http://www.teamnetwork.org/ ) – grew to a coalition in 2009 that includes CI, the Smithsonian Tropical Research Institute and the Wildlife Conservation Society. TEAM has collected and made publicly available more than 2.5 million photos from camera traps in tropical forests across the planet. With support from Hewlett Packard Enterprise, formerly Hewlett Packard Company, the TEAM Network is now able to analyze this global data set in near real-time and provide data-driven insights for improving natural resource management.

A major analysis of TEAM data was recently published in PloS Biology and caught vast media coverage as it represents the first standardized assessment of its kind for population trends of tropical forest mammals and terrestrial birds (http://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.1002357). TEAM researchers monitored 244 species of ground-dwelling mammals and birds in 15 protected areas spanning tropical regions in Central and South America, Africa and Southeast Asia. They analyzed more than 2.5 million pictures captured by more than 1,000 camera traps and found that 17% of the animal populations they monitor increased in number while 22% remained constant and 22% decreased. The Wildlife Picture Index (WPI) Analytics System was developed in partnership with Hewlett Packard Company.

WPI is an index that summarizes the occupancy trends at community level and is an official indicator to monitor progresses against the Aichi Targets under the CBD (http://www.bipindicators.net/wildlifepictureindex).

In 2015, MUSE – Science Museum established in a Natural Park in the Brenta Dolomites (near Trento) the first site in Europe of systematic camera trapping that adopts the standardized protocol developed by the TEAM Network. This entails the sampling of 60 camera trap locations within an area of 200-250 km2 for 30 days each year, to derive data that are suitable to occupancy analysis and that can allow, as demonstrated by the recent paper in PLoS Biology, to assess population trends using state-of-the-art ecological methods.

MUSE’s scientists hope that this protocol may attract the interest of other partners within the EU BON family that may be keen to replicate this sampling at other sites in Europe.

Recommendations from the FP7-funded EU project BESAFE

Biodiversity decline is a fact, but how can society be convinced of the benefits of biodiversity for human well being and of the necessity of further protective action? The FP7 funded EU project Biodiversity and Ecosystem Services: Arguments for our Future Environment (BESAFE) addressed this challenge to produce guidance that can help improve the way we use arguments for conservation and convincingly demonstrate the value of biodiversity to decision-makers.

Credit: Rob Bugter

Two key outputs of the project are the final brochure "How to Argue for Biodiversity Conservation More Effectively: Recommendations from the BESAFE project", including key conclusions from project publications and case studies, and an interactive online tool, which can lead stakeholders to the relevant information in a few mouse clicks.

Key recommendations of BESAFE featured in these resources are:

• The success of a more integrated approach depends on stakeholder engagement. A top-down policy framework that sets goals for the protection of particular sites and species is important, but it is not enough to prevent biodiversity loss. - -- An integrated approach, seeking to 'mainstream' biodiversity concerns across all policy sectors (e.g. agriculture, forestry, water, energy, transport and urban planning) is needed.
• Promote bottom-up initiatives at the local level. All stakeholders need to be actively involved in the decision-making process, which should facilitate building trust and working towards generally agreed and accepted solutions.
• Tailor arguments to the audience. Arguments need to be framed to fit the values and goals of the audience, embracing the plurality of values attached to nature, and using appropriate language. For example, over-emphasising economic arguments could alienate people who are motivated mainly by ethical and moral concerns.
• Use positive arguments. Positive framing of arguments to emphasise benefits is often more powerful than negative framing that focuses on threats and losses. The concept of ecosystem services is useful for emphasising positive benefits, provided that it is properly explained to stakeholders.
• Use a wider range of arguments. Arguments based on the economic value of nature for humans dominate European and national policy-making, and are often seen as central to gaining high-level policy-maker support, but our results show that many decision-makers and other stakeholders also use and respond positively to ethical and moral arguments.

"We aimed to provide the essence of 4 years worth of research in an easy to read and reuse form, to maximise the potential of using the right arguments for conservation at the right time in order to successfully demonstrate the value of biodiversity to decision-makers," comments Rob Bugter, co-ordinator of the BESAFE project.

Try out the resources below:

Bugter R., Smith A.C. and the BESAFE consortium. 2015. How to argue for biodiversity conservation more effectively. Recommendations from the BESAFE project. Pensoft Publishers, Sofia, 26 pp. Available at: http://www.besafe-project.net/img/uplf/BESAFE_brochure_online_18.pdf

BESAFE web tool available at: http://tool.besafe-project.net/

Creating and maintaining a biodiversity data collection has been a much-needed worldwide exercise for years, yet there is no single standard on how to do this. This has led to a myriad of datasets often incompatible with each other. To make the most out of biodiversity data and to ensure that its use for environmental monitoring and conservation is both easy and legal, EU BON published recommendations that provide consistent Europe-wide Data Publishing Guidelines and Recommendations in the EU BON Biodiversity Portal.

The report "Data Policy Recommendations for Biodiversity Data. EU BON Project Report" featured in the Research Ideas & Outcomes (RIO) journal, is the first contribution in a pioneering comprehensive project outputs compilation taking advantage of RIO's unique option to publish collections of project results.

Lyubomir Penev presenting the EU BON collection in RIO at the project's biodiversity data sharing and data publishing workshop in Sofia; Credit: Pensoft

Biodiversity data and information provide important knowledge for many biological, geological, and environmental research disciplines. Additionally, they are crucial for the development of strong environmental policies and the management of natural resources. Information management systems can bring together a wealth of information and a legacy of over 260 years of biological observations which are now dispersed in a myriad of different documents, institutions, and locations.

EU BON aims to build a comprehensive "European Biodiversity Portal" that will incorporate currently scattered Europe-wide biodiversity data, while at the same time helping to realize a substantial part of the worldwide Group on Earth Observations Biodiversity Observation Network (GEO BON). To achieve this ambitious plan, EU BON identifies the strong need for a coherent and consistent data policy in Europe to increase interoperability of data and make its re-use both easy and legal.

"Biodiversity data and information should not be treated as commercial goods, but as a common resource for the whole human society. The EU BON data sharing agreement is an important step in this direction," comments the lead author of the report Dr. Willi Egloff from Plazi, Switzerland.

In its report, the EU BON project analysis available single recommendations and guidelines on different topics. On this basis, the report provides structured guidelines for legislators, researchers, data aggregators, funding agencies and publishers to be taken into consideration towards providing standardized, easy-to-find, re-shareable and re-usable biodiversity data.

"We are extremely happy that EU BON is among the first to take advantage of our project outputs collections option in RIO. The first report they are publishing with us deals with issues of opening up data, and digitizing and collecting scientific knowledge, all close to RIO's mission to open up the research process and promote open science," says Prof. Lyubomir Penev, Founder and Publisher of RIO.

Original Source:

Egloff W, Agosti D, Patterson D, Hoffmann A, Mietchen D, Kishor P, Penev L (2016) Data Policy Recommendations for Biodiversity Data. EU BON Project Report. Research Ideas and Outcomes2: e8458. doi: 10.3897/rio.2.e8458

The importance of measuring species diversity as an indicator of ecosystem health has been long recognized and it seems that satellite remote sensing (SRS) has proven to be one of the most cost-effective approaches to identify biodiversity hotspots and predict changes in species composition. What is the real potential of SRS and what are the pitfalls that need to be avoided to achieve the full potential of this method is the topic of a new research, published in the journal Remote Sensing in Ecology and Conservation.

The new study, supported by the FP7 funded EU project EU BON takes the assessment of diversity in plant communities as a case study. Showing the difficulties to achieve high results by relying only on field data, the paper discusses the advantages of SRS methods.

"In contrast to field-based methods, SRS allows for complete spatial coverages of the Earth's surface under study over a short period of time. Furthermore, it provides repeated measures, thus making it possible to study temporal changes in biodiversity," explains Dr. D. Rocchini from Fondazione Edmund Mach, lead author and WP deputy leader / task leader in EU BON. "In our research we provide a concise review of the potential of satellites to help track changes in plant species diversity, and provide, for the first time, an overview of the potential pitfalls associated with the misuse of satellite imagery to predict species diversity. "

Traditionally, assessment of biodiversity at local and regional scales relies on the one hand on local diversity, or the so called alpha-diversity, and on the other, on species turnover, or beta-diversity. Only in combination of these two measures can lead to an estimate of the whole diversity of an area.

While the assessment of alpha-diversity is relatively straightforward, calculation of beta-diversity could prove to be quite challenging. This is where increased collaboration between the remote sensing and biodiversity communities is needed in order to properly address future challenges and developments.

The new research shown the high potential of remote sensing in biodiversity studies while also identifying the challenges underpinning the development of this interdisciplinary field of research.

"Further sensitivity studies on environmental parameters derived from remote sensing for biodiversity mapping need to be undertaken to understand the pitfalls and impacts of different data collection processes and models. Such information, however, is crucial for a continuous global biodiversity analysis and an improved understanding of our current global challenges."concludes Dr. Rocchini.

Original Source:

Rocchini, D., Boyd, D. S., Féret, J.-B., Foody, G. M., He, K. S., Lausch, A., Nagendra, H., Wegmann, M., Pettorelli, N. (2016), Satellite remote sensing to monitor species diversity: potential and pitfalls. Remote Sensing in Ecology and Conservation, 2: 25-36. doi: 10.1002/rse2.9

A new EU BON acknowledging data article provides a virtual species set as a valuable tool in biodiversity monitoring. 

Abstract

Predicting species potential and future distribution has become a relevant tool in biodiversity monitoring and conservation. In this data article we present the suitability map of a virtual species generated based on two bioclimatic variables, and a dataset containing more than 700,000 random observations at the extent of Europe. The dataset includes spatial attributes such as: distance to roads, protected areas, country codes, and the habitat suitability of two spatially clustered species (grassland and forest species) and a wide-spread species.

Original Source:

Garzon-Lopez, C.X., Bastin, L., Foody, G.M., Rocchini, D. (2016). A virtual species set for robust and reproducible Species Distribution Modelling tests. Data in Brief, 7: 476-479. doi: http://dx.doi.org/10.1016/j.dib.2016.02.058

April proved to be an eventful month for EU BON, hosting the presentation of two major project results, not only within the same month, but in the course of one week. While CSIC and partners were launching the beta-version of the long-waited Biodiversity Portal in Seville, another EU BON team was busy to search for Integrated approaches for focused biodiversity data mobilization in Stockholm.

About the Portal:

In a dedicated session at the WP2 meeting in Seville, Spain, EU BON partners had the chance to view their work for the last couple of years materialising into one of the main expected project results - the European Biodiversity Portal. That said, what was then presented on 29 April is a beta version, with the final release of the portal planned to become available in early 2017.

Participants at the Seville Workshop, April 2016. Credit: A. Hoffmann

Nonetheless, this beta version already addresses the main aim to offer a unique service for analysing and understanding biodiversity change in Europe. For instance, users can explore how relative abundance of species (within a larger group) changes over time by using big data mediated by GBIF. There is also a spatial browser for locating datasets in any part of the world, which may be usable for computing the EBVs for species populations.

Additionally, an online analytical data processing (OLAP) toolbox has been included in this release. Based on GEOSS technology, the new portal lets users harvest and simultaneously access data from several directories, including GBIF, LTER, EuMon (coming), PESI, and GEOSS sources.

This release also highlights the products of the EU BON project, including new methods and analyses packed in factsheets and infographics for the convenience of scientists and policy users alike. Explore the portal’s beta version here.

Suggestions of how to develop the beta portal further towards the full release are appreciated. Use the feedback form at the welcome page.

Integrated biodiversity data mobilization:

It is a challenge for Bioinformatics group in Europe and around the world to find better ways to integrate different systems and technology. In EU BON’s Task 1.4 the approach to solving this issue was to integrate different systems managing natural history collections and molecular data systems using the best techniques available.

In a dedicated workshop, which took place in Stockholm, Sweden, developers in the sphere of bioinformatics were presented with the project’s Data Mobilization Toolkit. This particular workshop was mainly focused on Docker as a tool to move towards a more integrated environment. Docker has revolutionized system integration and in the workshop the Swedish team shared their experience with dockerizing the DINA-system.

Discussions during the Stockholm workshop; Credit: Karin Karlsson

The workshop ended with a hackathon where they together explored the possibilities for using Docker in selected parts of integrating Pluto-F, JACQ and DINA.

A new position for "Researcher and Scientific Project Manager" is opened by the Doing it Together science (DITOs) project, running under the European Citizen Science Association (ECSA) within the H2020 framework, and led by the UCL London.

The DITOs project aims to elevate public engagement with science across Europe from passive engagement with the process of developing science to an active one.

Deadline: 23.05.2016

For more information on how to apply and requirements for this position, please download the Official Job Offer.

A new opinion piece published in the journal Global Change Biology looks at the development of biodiversity scenarios and their inclusion of  future land-use changes.

Abstract: 

As part of the new 6th Global Environment Outlook (GEO-6) UNEP has just released a separate Assessment for the pan-European region. The report provides an overview on the current state, trends and an outlook for the environment, and also highlights environmental factors that contribute to human health and well-being at the regional level.

Biodiversity is of central importance for human well-being and features prominently in the GEO-6 regional assessment. The state of biodiversity and ecosystems continue to give reason for major concerns and call for continued attention and increased efforts. The European Biodiversity Observation Network – EU BON – through its coordinating institution, the Museum für Naturkunde - Leibniz Institute for Evolution and Biodiversity Science contributed significantly to this report. 

Credits: UNEP/UNECE 2016, UNEP-WCMC based on IUCN (2014) data

The assessment for the pan-European region clearly indicates that biodiversity loss and ecosystem degradation is continuing in the region. Ongoing biodiversity decline and loss is particularly high in Eastern and Western Europe. Some positive developments and individual success stories offer lessons worth learning, for example developments of protected area networks such as Natura 2000 and the pan-European Emerald Network. However, an important challenge that needs urgent attention is improving availability and open access to comprehensive and integrated biodiversity data to support assessments and analysis, as well as planning and implementation of conservation efforts.

The full report can be found here: http://bit.ly/21q2ghL

UNEP press release: http://bit.ly/24A7sQN

For more information please contact:

Dr. Christoph Häuser christoph.häuser@mfn-berlin.de and Dr. Florian Wetzel florian.wetzel@mfn-berlin.de 
Museum für Naturkunde Berlin, Leibniz Institute for Evolution and Biodiversity Science, Invalidenstrassse 43, 10115 Berlin.

Camera trapping is a powerful and now widely used tool in scientific research on wildlife ecology and management. It provides a unique opportunity for collecting knowledge, investigating the presence of animals, or recording and studying behaviour. Its visual nature makes it easy to successfully convey findings to a wide audience.

The new book provides a much-needed guide to the sound use of camera trapping for the most common ecological applications to wildlife research. Each phase involved in the use of camera trapping is covered:

- Selecting the right camera type 
- Set-up and field deployment of your camera trap 
- Defining the sampling design: presence/absence, species inventory, abundance; occupancy at species level; capture-mark-recapture for density estimation; behavioural studies; community-level analysis 
- Data storage, management and analysis for your research topic, with illustrative examples for using R and Excel 
- Using camera trapping for monitoring, conservation and public engagement.

Each chapter in this edited volume is essential reading for students, scientists, ecologists, educators and professionals involved in wildlife research or management.

Find out more in the promotional video.

About the authors

Francesco Rovero is an ecologist and conservation scientist with a PhD in animal ecology. He is currently the Curator for Tropical Biodiversity at MUSE Science Museum in Trento, Italy. 

Fridolin Zimmermann is a carnivore conservation scientist with a PhD on Eurasian lynx conservation and ecology. He is currently coordinator of the large carnivore monitoring in Switzerland at Carnivore Ecology and Wildlife Management (KORA).

Collectively they have nearly 30 years of professional experience in the use of camera trapping for wildlife research, and have worked on a range of species, habitat and study types.

A new research paper Linking Earth Observation and taxonomic, structural and functional biodiversity: Local to ecosystem perspectives published in the journal Ecological Indicators looks at the ways in which earth observation (EO) techniques may provide a solution to overcome shortcomings in biodiversity monitoring by measuring entities of interest at different spatial and temporal scales. 

Abstract: 

Impacts of human civilization on ecosystems threaten global biodiversity. In a changing environment, traditional in situ approaches to biodiversity monitoring have made significant steps forward to quantify and evaluate BD at many scales but still, these methods are limited to comparatively small areas. Earth observation (EO) techniques may provide a solution to overcome this shortcoming by measuring entities of interest at different spatial and temporal scales.

This paper provides a comprehensive overview of the role of EO to detect, describe, explain, predict and assess biodiversity. Here, we focus on three main aspects related to biodiversity taxonomic diversity, functional diversity and structural diversity, which integrate different levels of organization molecular, genetic, individual, species, populations, communities, biomes, ecosystems and landscapes. In particular, we discuss the recording of taxonomic elements of biodiversity through the identification of animal and plant species. We highlight the importance of the spectral traits (ST) and spectral trait variations (STV) concept for EO-based biodiversity research.

Furthermore we provide examples of spectral traits/spectral trait variations used in EO applications for quantifying taxonomic diversity, functional diversity andstructural diversity. We discuss the use of EO to monitor biodiversity and habitat quality using differ-ent remote-sensing techniques. Finally, we suggest specifically important steps for a better integrationof EO in biodiversity research.EO methods represent an affordable, repeatable and comparable method for measuring, describing,explaining and modelling taxonomic, functional and structural diversity. Upcoming sensor developmentswill provide opportunities to quantify spectral traits, currently not detectable with EO, and will surelyhelp to describe biodiversity in more detail. Therefore, new concepts are needed to tightly integrate EOsensor networks with the identification of biodiversity. This will mean taking completely new directionsin the future to link complex, large data, different approaches and models.

Original reseach:

A. Lausch, L. Bannehr, M. Beckmann, C. Boehm, H. Feilhauer, J.M. Hacker, M. Heurich, A. Jung, R. Klenke, C. Neumann, M. Pause, D. Rocchini, M.E. Schaepman, S. Schmidtlein, K. Schulz, P. Selsam, J. Settele, A.K. Skidmore, A.F. Cord, Linking Earth Observation and taxonomic, structural and functional biodiversity: Local to ecosystem perspectives, Ecological Indicators, Volume 70, November 2016, Pages 317-339, ISSN 1470-160X, http://dx.doi.org/10.1016/j.ecolind.2016.06.022

The EU BON workshop "Biodiversity research for and by citizens in Eastern Europe: tools, information services and public engagement" was organized to present the EU BON citizen science gateway, share accomplishments of the project, promote products, raise and discuss challenges of citizen science and facilitate networking between countries, especially eastern and central European countries.

There were 33 participants from Baltic countries and Finland and EU BON partners from Norway, Spain, Israel and Brussels. First day was showcasing the citizen science initiatives in Estonia, following best practice examples from EU BON consortium. During the second day the participants got a chance to learn the tools and methods for citizen science data management by ECSA and EU BON. This was followed by world cafe style discussion about the needs of citizen science initiatives and Pan-European citizen science gateway. One of the important conclusions for Baltic countries is that there is a need for stronger collaboration and supportive infrastructure to make citizen science more effective and also deliver accessible data to research community.

Some workshop participants also took part of Tartu Mini-BioBlitz on 29th June, first BioBlitz in Estonia. BioBlitz participants observed 239 species of animals, plants and fungi .

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Workshop agenda

Read a first hand report form the workshop in the two great blog posts by Egle Marija Ramanauskaite (a workshop participant from Lithuania):

http://seplute.tumblr.com/post/146841955105/citsci-overtakes-the-baltics-citizen-science

http://seplute.tumblr.com/post/146844410470/citizen-science-workshop-in-tartu-recap-of-day-2