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G-Protein Signaling in Alzheimer's Disease: Spatial Expression Validation of Semi-supervised Deep Learning-Based Computational Framework

Systemic study of pathogenic pathways and interrelationships underlying genes associated with Alzheimer's disease (AD) facilitates the identification of new targets for effective treatments. Recently available large-scale multiomics datasets provide opportunities to use computational approaches for such studies. Here, we devised a novel disease gene identification (digID) computational framework that consists of a semi-supervised deep learning classifier to predict AD-associated genes and a protein–protein interaction (PPI) network-based analysis to prioritize the importance of these predicted genes in AD. digID predicted 1,529 AD-associated genes and revealed potentially new AD molecular mechanisms and therapeutic targets including GNAI1 and GNB1, two G-protein subunits that regulate cell signaling, and KNG1, an upstream modulator of CDC42 small G-protein signaling and mediator of inflammation and candidate coregulator of amyloid precursor protein (APP). Analysis of mRNA expression validated their dysregulation in AD brains but further revealed the significant spatial patterns in different brain regions as well as among different subregions of the frontal cortex and hippocampi. Super-resolution STochastic Optical Reconstruction Microscopy (STORM) further demonstrated their subcellular colocalization and molecular interactions with APP in a transgenic mouse model of both sexes with AD-like mutations. These studies support the predictions made by digID while highlighting the importance of concurrent biological validation of computationally identified gene clusters as potential new AD therapeutic targets.




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Neural Representations of Concreteness and Concrete Concepts Are Specific to the Individual

Different people listening to the same story may converge upon a largely shared interpretation while still developing idiosyncratic experiences atop that shared foundation. What linguistic properties support this individualized experience of natural language? Here, we investigate how the "concrete–abstract" axis—the extent to which a word is grounded in sensory experience—relates to within- and across-subject variability in the neural representations of language. Leveraging a dataset of human participants of both sexes who each listened to four auditory stories while undergoing functional magnetic resonance imaging, we demonstrate that neural representations of "concreteness" are both reliable across stories and relatively unique to individuals, while neural representations of "abstractness" are variable both within individuals and across the population. Using natural language processing tools, we show that concrete words exhibit similar neural representations despite spanning larger distances within a high-dimensional semantic space, which potentially reflects an underlying representational signature of sensory experience—namely, imageability—shared by concrete words but absent from abstract words. Our findings situate the concrete–abstract axis as a core dimension that supports both shared and individualized representations of natural language.




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Glucocorticoids Rapidly Modulate CaV1.2-Mediated Calcium Signals through Kv2.1 Channel Clusters in Hippocampal Neurons

The precise regulation of Ca2+ signals plays a crucial role in the physiological functions of neurons. Here, we investigated the rapid effect of glucocorticoids on Ca2+ signals in cultured hippocampal neurons from both female and male rats. In cultured hippocampal neurons, glucocorticoids inhibited the spontaneous somatic Ca2+ spikes generated by Kv2.1-organized Ca2+ microdomains. Furthermore, glucocorticoids rapidly reduced the cell surface expressions of Kv2.1 and CaV1.2 channels in hippocampal neurons. In HEK293 cells transfected with Kv2.1 alone, glucocorticoids significantly reduced the surface expression of Kv2.1 with little effect on K+ currents. In HEK293 cells transfected with CaV1.2 alone, glucocorticoids inhibited CaV1.2 currents but had no effect on the cell surface expression of CaV1.2. Notably, in the presence of wild-type Kv2.1, glucocorticoids caused a decrease in the surface expression of CaV1.2 channels in HEK293 cells. However, this effect was not observed in the presence of nonclustering Kv2.1S586A mutant channels. Live-cell imaging showed that glucocorticoids rapidly decreased Kv2.1 clusters on the plasma membrane. Correspondingly, Western blot results indicated a significant increase in the cytoplasmic level of Kv2.1, suggesting the endocytosis of Kv2.1 clusters. Glucocorticoids rapidly decreased the intracellular cAMP concentration and the phosphorylation level of PKA in hippocampal neurons. The PKA inhibitor H89 mimicked the effect of glucocorticoids on Kv2.1, while the PKA agonist forskolin abrogated the effect. In conclusion, glucocorticoids rapidly suppress CaV1.2-mediated Ca2+ signals in hippocampal neurons by promoting the endocytosis of Kv2.1 channel clusters through reducing PKA activity.




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The Colorful World of These Brazilian Identical Twins Bridges Dreams and Reality

The artists known as OSGEMEOS showcase the largest exhibition of their work in the United States at the Hirshhorn Museum and Sculpture Garden




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This Captivating Guide Uncovers the History and Mystery of Dinosaurs in 50 Fossils

A paleontologist at the Natural History Museum in London chronicles the age of the famous and fascinating massive reptiles




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President of Azerbaijan visits FAO

The President of the Republic of Azerbaijan, Ilham Aliyev, met today with FAO Director-General José Graziano da Silva at FAO headquarters in Rome.

With agriculture growing at a 6 [...]




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GRULAC endorses FAO Director-General's candidature for a second term

Just announced by the Group of Latin America and the Caribbean Countries (GRULAC)

The Group of Latin American and Caribbean Countries (GRULAC) of FAO in Rome is pleased to endorse the [...]




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Incumbent Director-General only candidate for election

Rome - José Graziano da Silva, the [...]




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Africa Regional Group endorses FAO Director-General's candidature for a second term

Rome, The Africa Regional Group of Ambassadors and Permanent Representatives accredited  to the Rome based UN Agencies have announced the endorsement of the candidature of Dr. José Graziano da Silva [...]




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Near East Group endorses FAO Director-General's candidature for a second term

Rome, 02 March 2015 - In a letter addressed to the Director-General, the Chairperson of the Near East Regional Group has announced their endorsement of the candidature [...]




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Asia Regional Group endorses FAO Director-General's candidature for a second term

In a letter addressed to the Director-General, the Ambassador of Malaysia to FAO, on behalf of the Chair of the Asia Group, has announced the endorsement of the [...]




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Graziano da Silva is confident in a “significant progress” against hunger in the next four years

FAO Director-General José Graziano da Silva today expressed confidence that “significant progress against hunger, food insecurity and malnutrition,” will be achieved in the next four years. He made the [...]




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FAO to provide UN Security Council with regular analysis of food security statuses in countries in conflict

New York- FAO Director-General José Graziano da Silva and the President of the UN Security Council (UNSC), Ambassador Ismael Gaspar Martins, have concurred upon the importance of using FAO’s regular [...]




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FAO to provide UN Security Council with regular analysis on food security

The Director-General addressed the members of the UN Security Council (UNSC) on Tuesday in what was FAO’s first appearance before the principal UN body on global peace and security affairs.

Organized [...]




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FAO Conference and a lot on the side

The 40th Session of the FAO Conference will begin on Monday, 3 July at 9:00 in the Plenary Hall and will continue through Saturday, 8 July 2017. Approximately 600 [...]




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The 159th session of the FAO Council came to a close last Friday, following intense week-long deliberations, concluding in consensus

Addressing the plenary meeting in the closing session of the 159th Session of the Council, the Director-General expressed his appreciation to delegates for their commitment and hard work to [...]




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A new phase for the Africa Solidarity Trust Fund, a Council Side Event

On Friday, 7 December during the 160th session of the Council, a side event on the Africa Solidarity Trust [...]




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An action-oriented guide for decision makers

A valuable tool has been produced for decision makers responsible for integrating the Sustainable Development Goals into national policies and programmes. This publication, Transforming food and agriculture to achieve [...]




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Candidates for the post of FAO Director-General announced

FAO member nations to choose head of the UN specialized agency in July during the 43rd session of the FAO Conference




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The World’s Tallest Water Slide Is More Than 134 Feet Tall

Riders--who will descend in inflatable rafts of four rather than alone--will reach speeds of more than 65 miles per hour




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Pioneering Video Artist Peter Campus Presents His Version of the Star-Spangled Banner




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Cupcake Presidents

Pastry artist Zilly Rosen renders Presidents Lincoln and Obama in cupcake form at the Smithsonian American Art Museum (Meredith Bragg). Read more at http://www.smithsonianmag.com/history-archaeology/Inauguration-2009.html




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What Happens When Galaxies Collide?

In about four billion years from now, the Milky Way and Andromeda galaxies will crash together Visualization: NASA, ESA, and F. Summers, STScI Simulation credit: NASA, ESA, G. Besla, Columbia University, and R. van der Marel, STScI




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E-Line Never Alone Video Game




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Did New Orleans Invent the Cocktail?

Cocktail historians differ on the birthplace of the word "cocktail," but they cherish America' invention of drinks like the mint julep (Meredith Bragg)




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Fridays in Floyd

Every week, the Floyd Country Store draws musicians and their fans from across southwest Virginia




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Evaluating Sources and Using Evidence




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This Bandit-Faced Dino Hid From Predators Using Multiple Types of Camouflage

Credit: David Marshall, University of Bristol




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Take a Ride on a Norry

In the jungles of Cambodia, villagers travel along abandoned railway tracks on a norry, a rickety transport of spare lumber with a speedy (and loud) motor attached Video, Photographs and Narration by Russ Juskalian




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SmartNews: Why Are These Mice Unafraid of Cats?

Scientists are researching how the rodent can become less susceptible to its feline foe.




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Did the Spanish Flu Impact America's Ability to Fight in WWI?

By late September 1918, in a bid to contain the spread of the flu, the U.S. had made the decision to cancel the draft. It was too little, too late—in October alone, over 200,000 Americans were killed by the disease.




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High-Tech Construction With Low-Tech Ideas

In this time-lapse video, watch how workers built a visitor’s center in South Africa using ancient Roman techniques such as the arched ceiling, or vault




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Inside the Den

Watch Masai Mara hyenas in their natural habitat




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Dogs Engage in Rapid Mimicry

A slowed-down recording, made as part of a scientific study, shows one dog quickly mimicking another canine's expression during playtime in a park in Palermo. (Video courtesy Elisabetta Palagi)




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Smithsonian Magazine Video Contest Highlights 2.0

Five categories (People, Arts, Nature, Travel and Mobile) and a grand prize of $2,000.




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3D Imaging of the Apollo 11 Capsule - Outside




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Shooting Stars: Farzana Wahidy

Selected by Reza for our special issue, this up-and-coming photographer discusses her work




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Ask Smithsonian: How Do Spiders Make a Web?

How do spiders make such intricate webs? Don’t get too tangled up about it. In this one-minute video, our Ask Smithsonian host, Eric Schulze, weaves his way to the answer.




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Scientists Didn't Know Much About Earthquakes Before 1933

On March 10, 1933, a major earthquake caught the Los Angeles area by surprise. The devastation was of sufficient scale to spur scientific interest in earthquakes—and how to predict them.




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How Idlewild Courted the Black Middle Class in the 1930s

By the 1930s, the black middle class had arrived, with the purchasing power to match. Sensing an opportunity, developers established Idlewild: a summer resort aimed exclusively at African-Americans.




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John F. Kennedy's Campaign for President

The curators at the American History museum delve into the archives to show artifacts from the 1960 election.




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Inside the Photobooth

Collector Nakki Goranin leads a tour of her collection (Kenneth Fletcher). Read more at http://smithsonian.com/photobooth




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Ask Smithsonian: When Did People Start Keeping Pets?

Man’s best friend is also one of his oldest.




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Louise Bourgeois: The Spider, the Mistress, the Tangerine

In this trailer for a documentary about the acclaimed sculpturist, Louise Bourgeois discusses her life work




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Ask Smithsonian: What Would Happen if a Large Asteroid Hit the Moon?

Think blockbuster movie and you’ve got an idea of how this story ends




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How Army Ants Build Better Bridges

In Panama, researchers recorded army ants crafting living bridges to take the most efficient route along the forest floor. (Christopher R. Reid, Matthew J. Lutz, Simon Garnier, and the New Jersey Institute of Technology)




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The Residents of Arlington Cemetery

While President Kennedy may be one of the best known gravesites in Arlington, there are many other notable Americans buried in these sacred grounds (Ryan Reed and Molly Roberts). Read more at http://smithsonian.com/arlington




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The Endangered Orchids of North America

The North American Orchid Conservation Center is working to ensure the survival of some of the most unique plants in the world




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Ask Smithsonian: How Did King Tut Die?

It was no doubt a fantastical death, worthy of a pharaoh




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The Changing Colors of Deciduous Leaves

As foliage darkens in the fall, the pigments within the plant matter break down and transform