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Cities, investors vie for WNBA teams after record-setting season

The WNBA wrapped up its biggest season ever last month with eye-popping TV ratings, robust ticket sales and record revenue. Now, everybody wants in on the action.




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76ers' All-Star guard Tyrese Maxey is out with hamstring injury

The trio of 76ers' stars looked majestic on opening night as their images covered the arena's 4K kinetic scoreboard. Joel Embiid palmed a basketball. Tyrese Maxey in the middle appeared ready to burst off the screen for a dunk. Paul George looked fierce as he squeezed a basketball with both hands.




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Alperen Sengun's 27 points and 17 rebounds help Rockets beat Wizards 107-92

Alperen Sengun scored 27 points for a second straight game and added 17 rebounds, leading the Houston Rockets to a 107-92 win over the Washington Wizards on Monday night.




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Joel Embiid set to return to slumping 76ers team in need of his presence

Joel Embiid stuck around for extra work after shootaround. The 7-footer who has yet to officially step on the court for the Philadelphia 76ers this season was in no rush to finish his drills.




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FDA proposes end to decongestant element

The Food and Drug Administration could put a stop to the use of phenylephrine, an ingredient in over-the-counter nasal decongestants, because its studies found it doesn't work.




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Jury awards $12 million to woman fired after refusing to get COVID-19 vaccine

A jury awarded more than $12 million Friday to a woman who lost her job at a Michigan insurance company after declining to get a COVID-19 vaccination.




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Veterans with PTSD making progress thanks to service dog program: 'I got my life back'

After working at a crowded and dangerous internment camp in Iraq, Air Force Staff Sgt. Heather O'Brien returned to the U.S. with anxiety and post-traumatic stress disorder.




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WHO says mpox cases in Congo's epicenter where the new variant was detected may be 'plateauing'

The World Health Organization said mpox cases in the region of Congo where a new and more infectious variant was first detected appear to be "plateauing," even as the virus continues to increase in other regions of the country, as well as in Burundi and Uganda.




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RFK Jr. cues up clash by calling for the removal of fluoride from drinking water

Robert F. Kennedy Jr. is pushing President-elect Donald Trump to crack down on fluoride levels in drinking water, saying the mineral can lead to unintended medical problems -- and setting up a clash with medical experts who defend it as a proven way to fighting cavities.




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Idaho challenges abortion 'airlift' claims

When opponents of Idaho's strict abortion law said it was forcing women to be emergency-airlifted out of state to have their pregnancies terminated, it shocked the Supreme Court. Now Idaho says the claim is not true.




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Growing pollution in Pakistan's Punjab province has sickened 1.8M people in a month, officials say

Worsening air pollution sickened an estimated 1.8 million people in Pakistan's eastern Punjab province in the past month, health officials said Tuesday, as schools across the province were ordered to close for five days to protect children's health.




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Sebastian Coe among seven IOC members to enter race to succeed Thomas Bach as president

Two former Olympic champions are in the race to be the next IOC president. So is a prince of a Middle East kingdom and the son of a former president. The global leaders of cycling, gymnastics and skiing also are in play.




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Japanese figure skating star Rika Kihira to miss Grand Prix season with stress fracture in ankle

Four-time Grand Prix series medalist Rika Kihira will miss the upcoming figure skating season because of a stress fracture in her right ankle that has not fully healed, the Japanese star announced Wednesday.




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New Edwin Moses doc '13 Steps' shows how clearing the hurdles was the easy part for a track icon

Not long after Edwin Moses figured out how to attack the solution to track's ultimate math problem, he transformed himself into the best hurdler in history.




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Could a doping probe strip Salt Lake City of the 2034 Olympics? The IOC president says it's unlikely

In his first visit back to Utah since awarding Salt Lake City the 2034 Winter Games, the International Olympic Committee president sought to ease worries that the city could lose its second Olympics if organizers don't fulfill an agreement to play peacemaker between anti-doping authorities.




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Biles' post-Olympic tour is helping give men's gymnastics a post-Olympic boost

Simone Biles simply wanted to mix it up when the gymnastics superstar invited some of the top American men to join her post-Olympic Tour.




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Sebastian Coe says his run to be IOC president might not be such a longshot after all

He's been tough on Russia, led the charge to put prize money in the pockets of athletes and pushed for a definitive but much-derided resolution in the longstanding debate over transgender athletes.




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Doping ban reduced for German hockey player who won Olympic silver medal

Yannic Seidenberg, who won the silver medal with the German men's hockey team at the 2018 Olympics, has had his doping ban cut by 18 months.




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That's flippin' amazing! Figure skating Grand Prix season begins with backflips no longer banned

American figure skater Ilia Malinin has been doing gymnastics off the ice much of his life, one of the many reasons why he can so effortlessly land the dazzling quadruple jumps that made him a world champion at just 19 years old last March.




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7 charged in cyberbullying campaign targeting Paris Olympics' artistic director

French authorities said Friday they have charged seven individuals in connection with a cyberbullying campaign targeting Thomas Jolly, the artistic director behind the Paris Olympics' opening and closing ceremonies.




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USA Track and Field will bring U.S. Paralympics track and field program under its roof in January

USA Track and Field is bringing the U.S. Paralympics Track & Field program in-house beginning Jan. 1 as part of a partnership that will unite all of its athletes under one roof.




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Olympic medalist race walker Koki Ikeda of Japan suspended in doping investigation

Olympic silver medalist race walker Koki Ikeda of Japan has been provisionally banned for suspected blood doping, track and field's Athletics Integrity Unit said on Friday.




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Notre Dame marks arrival of Paris Olympics' iconic trackside bell as cathedral reopening nears

Paris's Notre Dame cathedral, whose historic bells were silenced following 2019's devastating fire, will soon echo again with fresh chimes.




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Canada Soccer Association said Olympics drone-spying scandal was not an isolated misstep

The Canadian Soccer Association says an independent review confirmed the Paris Olympics drone-spying scandal was not an isolated misstep.




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Former NBA player Kyle Singler spurs concern from basketball world with cryptic Instagram post

Former Duke star Kyle Singler's cryptic Instagram post saying he fears for his life has drawn an outpouring of concern and support from former teammates and others.




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Federal judge blocks state law ordering Ten Commandments to be displayed in classrooms

A federal judge on Tuesday temporarily blocked a state law that would require classrooms in Louisiana to post the Ten Commandments starting in January.








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Is The Lazarus Project Coming Back?

Season 2 of the sci-fi thriller premieres on TNT in the United States on Sunday, June 9. But there's a catch.

The post Is The Lazarus Project Coming Back? first appeared on SciFi Stream.



  • The Lazarus Project
  • TNT




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Bringing big data to biodiversity

EU-funded project EU BON will build the European gateway for integrated biodiversity information

On 1st December 2012, 30 research institutions from 15 European countries, Brazil, Israel and the Philippines, and more than 30 associated partners started EU BON - "Building the European Biodiversity Observation Network". This €9 million, EU-funded research project aims to advance biodiversity knowledge by building a European gateway for biodiversity information, which will integrate a wide range of biodiversity data – both from on ground observations to remote sensing datasets – and make it accessible for scientists, policy makers, and the public.
The project plans to advance the technological platform for GEO BON (Group on Earth Observations Biodiversity Observation Network) to improve the assessment, analysis, visualisation and publishing of biodiversity information, and to enable better linkages between biodiversity and environmental data. EU BON will ensure a timely provision of integrated biodiversity information needed to meet the global change challenges and to contribute for next generation environmental data management at national and regional levels.
"Global problems arising from rapidly changing environmental conditions and biodiversity loss require internationally coordinated solutions" said the project coordinator Dr. Christoph Häuser from the Museum für Naturkunde – MfN, in Berlin, Germany. "Current biodiversity observation systems and environmental data are unbalanced in coverage and not integrated, which limits data analyses and implementation of environmental policies. A solution seems impossible without real integration of biodiversity data across different spatial, temporal, and societal scales", added Dr Häuser.
EU BON will deliver several important products, including a European integrated biodiversity portal, a roadmap for EU citizen sciences gateway for biodiversity data, an open data publishing and dissemination framework and toolkit, a policy paper on strategies for data mobilisation and use in conservation, a prototype of integrated, scalable, global biodiversity monitoring schemes, strategies for EU-integrated national and regional future biodiversity information infrastructures, and a sustainability plan for regional and global biodiversity information network.
The cooperation for data integration between biodiversity monitoring, ecological research, remote sensing and information users will result in proposing a set of best-practice recommendations and novel approaches with applicability under various environmental and societal conditions. A key task of EU BON is to harmonise future biodiversity monitoring and assessments and to engage wider society groups, such as citizen scientists and other communities of practise.
Although focussing primarily on European biodiversity and collaborating with major EU initiatives (e.g. LifeWatch and others), EU BON will also collaborate closely with worldwide efforts such as GEO BON, GBIF, the Convention on Biological Diversity (CBD), the Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services (IPBES) and others. EU BON will be a valuable European contribution to the Global Earth Observation System of Systems (GEOSS), and be built on the GEO principles of open data sharing.
The kick-off meeting of EU BON will take place on 13-15 February 2013 at the Museum für Naturkunde – MfN in Berlin, Germany and will be preceded by a symposium "Nature and governance: biodiversity data, science and policy interface" on 11-12 February 2013.

###

Additional information
EU BON (2012) stands for "Building the European Biodiversity Observation Network" and is an European research project, financed by the 7th EU framework programme for research and development (FP7). EU BON seeks ways to better integrate biodiversity information and implement into policy and decision-making of biodiversity monitoring and management in the EU.
GEO BON stands for "Group on Earth Observations Biodiversity Observation Network". It coordinates activities relating to the Societal Benefit Area (SBA) on Biodiversity of the Global Earth Observation System of Systems (GEOSS). Some 100 governmental, inter-governmental and non-governmental organisations are collaborating through GEO BON to organise and improve terrestrial, freshwater and marine biodiversity observations globally and make their biodiversity data, information and forecasts more readily accessible to policymakers, managers, experts and other users. Moreover, GEO BON has been recognized by the Parties to the Convention on Biological Diversity. More information at: http://www.earthobservations.org/geobon.shtml.
GEOSS stands for Global Earth Observation System of Systems, built by the Group on Earth Observations (GEO). GEO is constructing GEOSS on the basis of a 10-Year Implementation Plan for the period 2005 to 2015. The Plan defines a vision statement for GEOSS, its purpose and scope, expected benefits, and the nine "Societal Benefit Areas" of disasters, health, energy, climate, water, weather, ecosystems, agriculture and biodiversity.

 





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Stellenausschreibung: Wissenschaftliche/r Mitarbeiter/in für das EU BON Projekt am Museum für Naturkunde Berlin

Job alert: Research assistant at Museum für Naturkunde Berlin
The Museum für Naturkunde, Berlin offers a job opportunity with the EU BON project (WP1+WP2 tasks) - fluency in German is a must!
The position is set for a two-year contract with a possibility for further extensions.
More information about the position, the application process and job requirements is available below and in the document attached.
##

Zur Unterstützung der Beteiligung des MfN an EU BON ist am Museum für Naturkunde Berlin zum nächstmöglichen Zeitpunkt eine vorerst auf 2 Jahre befristete (mit der Option der Verlängerung)
Position eines/einer Wissenschaftlichen Mitarbeiters/in mit 75% der regelmäßigen wöchentlichen Arbeitszeit Entgeltgruppe E13 TV-L Berlin zu besetzen
Aufgabengebiete:
Wissenschaftliche Mitarbeit und eigenständige Durchführung spezifischer Aufgaben innerhalb des EU BON Projektes, vor allem innerhalb der Arbeitspakete 1 (Datenquellen) und 2 (Datenintegration), i.b.
- Datenrecherche und Erstellung von Übersichten für EU BON relevanter Daten- und Informationsquellen;
- Bewertung und Lückenanalyse bestehender Datenbanken und Informationssysteme zur Biodiversität;
- Harmonisierung, Aktualisierung und Koordinierung taxonomischer Referenz-Datenbanken i.b. für Europa;
- Unterstützung der Einführung und Verbesserung von Datenstandards zur Verbesserung der Integration und Interoperabilität unterschiedlicher Datenebenen
- Mitwirkung bei Erprobung neuer Datenerhebungsansätze und –verfahren, auch im Gelände
- Planung und Durchführung von Projekttreffen und -veranstaltungen
- Erstellung von Ergebnisberichten und wissenschaftlichen Präsentationen / Veröffentlichungen.

Bewerbungsschluss:  28.02.2013




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New "LinkOut" tool by National Center for Biotechnology Information (NCBI) providing easy link to PubMed and GenBank data

A new "LinkOut" feature introduced by the National Center for Biotechnology Information (NCBI) NCBI’s allows the easy linking to content on PubMed and GenBank.  Dryad has already introduced the feature benefitting from easy and fast linking of associated content to the two resources.

PubMed and GenBank, from the National Center for Biotechnology Information (NCBI), are hugely popular resources for searching and retrieving article abstracts and nucleotide sequence data, respectively.  PubMed indexes the vast majority of the biomedical literature, and deposition of nucleotide sequences in GenBank or one of the other INSDC databases is a near universal requirement for publication in a scientific journal. LinkOut allows the data from an article to be distributed among repositories without compromising its discoverability.

Dryad, intends to expand on this feature in a couple of ways. First, it is planned to make Dryad content searchable via the PubMed and GenBank identifiers, which because of their wide use will provide a convenient gateway for other biomedical databases to link out to Dryad.  Second, open web standards will be used to expose relationships between content in Dryad and other repositories, not just NCBI.

Original source: Dryad news and views





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Data Papers as Incentives for Opening Biodiversity Data

One year of experience and perspectives for the future from Pensoft Publishers and GBIF

In 2012 GBIF and Pensoft pioneered a workflow between the GBIF’s Integrated Publishing Toolkit (IPT) and Pensoft’s journals ZooKeys, PhytoKeys, MycoKeys, Nature Conservation, etc. to automatically export metadata into the form of a data paper manuscript, based on the Ecological Metadata Language (EML). One year on they share their experience and perspectives for the future of data publishing.

In its essence, a Data Paper is a scholarly journal publication whose primary purpose is to describe a dataset or a group of datasets, rather than to report a research investigation. As such, it contains facts about data, not hypotheses and arguments in support of the data, as found in a conventional research article. The future of data publishing according to Pensoft Publishers and GBIF, lies in the elaborating of formats for descriptions of various kinds of data (ecological, morphological, genomic, environmental, etc.), as well as in linking to various platforms (GBIF, Scratchpads, Dryad, EDIT, CBOL, etc.).

More about the collaboration and experience of Pensoft Publishers and GBIF learn from their joint poster available here.





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First meeting of WP 5 EU BON testing and validation of concepts, tools, and services held

The first meeting of Work Package 5 (EU BON testing and validation of concepts, tools, and services) was held between 2nd and 4th April, 2013 in the Doñana Biological Station, in Spain. 23 people from 10 different institutions (7 of the EU BON consortium) worked towards building a draft on Principles and Guidelines for establishing and operating EU BON test sites.

During the meeting the members agreed on starting documenting each of the sites, using a common format to be decided in May on the Informatics Task Force meeting of WP2 (Data integration and interoperability) in Norway. A data inventory will also be built in each of the sites, adding monitoring protocols in stepwise fashion.

In addition the meeting served to get a better view of the variety of Ecosystems in Doñana as well as the monitoring protocols that are being conducted in this area. 





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Investing in green infrastructure will bring multiple returns to nature, society and people

The European Commission adopted a new strategy for encouraging the use of green infrastructure, and for ensuring that the enhancement of natural processes becomes a systematic part of spatial planning. Green Infrastructure is a tried and tested tool that uses nature to provide ecological, economic and social benefits. Instead of building flood protection infrastructure, for example, a green infrastructure solution would be to allow a natural wetland to absorb the excess water from heavy rain.

Green infrastructure is often cheaper and more durable than alternatives provided through conventional civil engineering. Biodiversity-rich parks, green spaces and fresh air corridors can for example mitigate the negative effects of summer heat waves. In addition to the health and environmental benefits, green infrastructure also brings multiple social benefits: it creates jobs and makes cities more appealing places to live and work. And it allows for wildlife to thrive, even in an urban context.

Environment Commissioner Janez Potočnik said: "Building green infrastructure is often a good investment for nature, for the economy and for jobs. We should provide society with solutions that work with nature instead of against it, where that makes economic and environmental sense."

More about the EC Green Infrastructure here: http://ec.europa.eu/environment/nature/ecosystems/index_en.htm

 





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Biodiversity databases: language and location help explain biases

Science for Environment Policy features a policy brief explaining the biases around biodiversity databases in their latest issue 331, from 6 June 2013. "Biodiversity databases: language and location help explain biases" features a new study arguing that low numbers of English speakers, large distances from the database host and low security acting as key barriers to data collection and among the main reasons for the underrepresentation of some countries in biodiversity databases.

Source: Amano T., Sutherland W.J. (2013) Four barriers to the global understanding of biodiversity conservation: wealth, language, geographical location and security. Proceedings of the Royal Society B. 280: 20122649. doi: 10.1098/rspb.2012.2649

 

 





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EUBrazilOpenBio announces 2 new training tools covering Ecological Niche Modeling and Cross-mapping

The EUBrazilOpenBio project  announces two new training tools as a part of its e-training Programme aiming at educating and enabling current and potential users of EUBrazilOpenBio to unlock new knowledge and shape effective policy on biodiversity challenges. The new tools cover the following use cases: Ecological Niche Modeling and Cross-mapping.

The EUBrazilOpenBio anytime, anywhere eTraining tools are designed for researchers in the spheres of Biodiversity, Life science, Climate Change, application Developers as well as regulatory authorities and policy decision-makers.

EUBrazilOpenBio is focused on tackling the complexity of biodiversity science such as the diversity of multidisciplinary datasets spanning from climatology to earth sciences by integrating advanced computing resources with data sources across Europe and Brazil.

For more informationand to try out the new tools click here.





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"Biodiversity and Integrated Environmental Monitoring": A new book explores the challenges in front of biodiversity data management and implementation in the future

The Brazilian initiative PPBio (The Program for Research on Biodiversity) launches a new book based on over a decade of experience in implementing the biodiversity monitoring system RAPELD in the Brazilian Amazon. Richly illustrated and written in simple language, the book "Biodiversity and Integrated Environmental Monitoring" addresses the issues that led to the system development, covering topics such as the spatial organization and representation of biological diversity, environmental monitoring, and data management.

Monitoring of biodiversity is not merely an academic endeavor. Although scientific aspects such as representation of biodiversity and biodiversity data integration, management and preservation are of a great importance, it is also essential to think about the political context in which decisions will be made and how to incorporate political stakeholders and decision makers.

"As this important book makes clear questions about biodiversity are far from purely scientific. Biodiversity matters. Our needs to assess it embed in a complex of questions posed by managers, policy makers and those who live in or otherwise benefit from biodiversity.",  explains Dr Stuart L. Pimm in the preface of the book. "So how do we ensure that data collected now will be useful for purposes we cannot yet imagine at some unexpected time in the future? Or provide comparison to some other place that we might survey some day?"

Those and many more questions regarding biodiversity data management and policy involvement are discussed in the new book "Biodiversity and Integrated Environmental Monitoring".

 





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Job Alert: Research Associate - Linking Biodiversity Data to Policy, University of Cambridge

The University of Cambridge invites for applications for a Research Associate to work on EU-BON, a major EU-funded research project seeking to improve the use of biodiversity data in public policy.

Applicants should have a PhD in a relevant social science or conservation science. Experience in both qualitative and quantitative analysis is desirable. Applicants should ideally have some first-hand experience of public policy processes and a willingness to travel within the European Union for research. Excellent organisational and communication skills will be essential in working as a successful part of this large, multi-partner and multinational team.

The researcher will carry out research on how biodiversity data is currently used in European policy making and will contribute to analysis of the opportunities to increase its effective provision and use. Research methods are likely to combine qualitative and quantitate analysis and to focus on the use of biodiversity data in public policy contexts. It is expected that some of the research will take place in Brussels. The researcher will have considerable freedom in defining the research project in discussion with Dr Doubleday and Prof Sutherland. In addition to carrying out research on the use of biodiversity data in European policy making, the researcher will support Cambridge's contribution to EU BON as a whole. This will involve contributing to other workpackages as and when required. More information about EU BON can be found here: http://www.eubon.eu

Fixed-term: The funds for this post are available for 36 months in the first instance.

Completed applications consisting of a CHRIS/6 (Parts I & III) (downloadable from http://www.admin.cam.ac.uk/offices/hr/forms/chris6/) a covering letter, and CV, should be sent to Danielle Feger, via email: geogrec@hermes.cam.ac.uk or sent to Research Administrator, Department of Geography, Downing Site, Cambridge, CB2 3EN

Please quote reference LC01355 on your application and in any correspondence about this vacancy.

Any enquiries concerning the position can be made to Dr Robert Doubleday, rob.doubleday@csap.cam.ac.uk

For more information about the position, please visit: http://www.jobs.cam.ac.uk/job/1611/

 





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Handling "big data" is no small feat

Policy-makers and science and industry representatives are discussing how to make large amounts of Earth observation data accessible to a wider user community. To explore this idea, some 250 science, industry and policy-making representatives and national delegates from Europe, the US, Australia, China and Africa met at ESA’s ESRIN centre in Frascati, Italy last week for ESA’s first ‘Big Data from Space’ event.

Representatives from ESA and NASA opened the event together with the European Commission. European Commission Directorates-General for Enterprise and Industry, Research and Innovation and Communications Networks, Content and Technology, along with representatives from the European Environment Agency, the National Oceanic and Atmospheric Administration and the Open Geospatial Consortium acted as session chairs. 

Javier de la Torre, representing the EU BON partner Vizzuality gave a presentation 'Global Deforestation through Timeme: Big Data Meets Scalable Visualizations,' which included some of the work Vizzuality is doing toward the EUBON project.

The event concluded with a strong call by all parties for the ability to handle and use big Earth observing data. This could potentially open new opportunities for research and international cooperation schemes such as programmatic and industrial coordination.

 

 





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43rd Annual Meeting of the Ecological Society of Germany, Austria and Switzerland

In 2013, the University of Potsdam will host the 43rd Annual Meeting of the Ecological Society of Germany, Austria and Switzerland. The meeting (www.gfoe-2013.de) will take place from September 9 to 13, 2013 in Potsdam, Germany.

The guiding theme of the 43rd Annual Meeting is "Building bridges in ecology - linking systems, scales and disciplines".
Along the lines of this guiding theme, we will stimulate scientific discussions about all aspects in basic and applied ecological research contributing to better connect.

 

 





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Memorandum of Understanding signed at Bioinformatics Horizon Conference in Rome

At the Bioinformatics Horizon 2013 Conference (3 - 6 September 2013, Rome) a Memorandum of Understanding was signed between PESI and EU BON. Christoph Häuser, on behalf of EU BON and Yde de Jong on behalf of PESI (see picture below), signed the document to strengthen the cooperation and formalise the integrating efforts of the European species infrastructures.  

PESI is now a new associate partner of EU BON, a consortium with currently 30 partners from 18 countries. One of the common aims of EU BON and PESI will be to establish and sustain standard taxonomies for Europe.  EU BON will support the PESI backbone developments, including its components, with a focus on Fauna Europaea and Euro+Med. Besides analyzing current gaps, new ideas will be developed to trigger expert involvement and enhance the data management systems.

In a side-meeting at BIH 2013, some ideas were discussed with available EU BON and PESI partners. Important steps will be taken to secure the sustainability of databases and expertise networks combined with the development of technical innovations for users and stakeholders and to promote the implementation of PESI as a European (INSPIRE) standard. It will be also important to further integrate the huge expertise networks, outreach to PESI Focal Points and expand the geographical scope. Furthermore, it will be important to integrate additional data types and data-resources.





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FishBase and Fish Taxonomy Training Course 2014: Call for Traineeship

The Royal Museum for Central Africa (RMCA) in Tervuren (Belgium) is part of the FishBase Consortium and responsible for the information on the fresh- and brackish water fishes of Africa. Through an agreement with the Belgian Development Cooperation and as part of the FishBase programme, the RMCA has five grants available for a 3-month training programme in the use of FishBase and the taxonomy of African fishes.

The training includes three subsets:

  1. A detailed explanation of FishBase in all its aspects;
  2. A training in the taxonomy of African fishes; and
  3. A case study based on data from FishBase or on taxa for which taxonomic problems have been encountered.

The main focus of the training is on fish biodiversity data and their integration into FishBase, and on how to use and contribute data to FishBase. The context of these contributions may vary and can also include the knowledge on common names, fish ecology, fisheries statistics, aquaculture and many other areas of fish biology.

After the training, the participants should be able to make their own contribution to fish biology and continue to work on FishBase. They are encouraged to teach their newly apprehended skills to new/local users, to help in completing the database and keeping it up to date, and to spread the use of FishBase as a source of information and a fisheries tool.

This course has been offered annually since 2005 and is held at the Royal Museum for Central Africa (Leuvensesteenweg 13, B-3080 Tervuren, Belgium).

To apply for traineeship and for more information, go to:
http://www.africamuseum.be/research/collaborations/training/group?set_language=en&cl=en

Please note that for 2014, this course will be given in French only.

Contact: Dimitri Geelhand de Merxem (dimitri.geelhand@africamuseum.be)

 

 





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Advanced Open Access publishing model

The Biodiversity Data Journal goes beyond the basics of the Gold Open Access

There are two main modes of open access publishing – Green Open Access, where the author has the right to provide free access to the article outside the publisher's web site in a repository or on his/her own website, and Gold Open Access, where articles are available for free download directly from the publisher on the day of publication.

Opening of content and data, however does not necessarily mean "easy to discover and re-use". The Biodiversity Data Journal proposed the term "Advanced Open Access" to describe an integrated, narrative (text) and data publishing model where the main goal is to make content "re-usable" and "interoperable" for both humans and computers.

To publish effectively in open access, it is not sufficient simply to provide PDF or HTML files online. It is crucial to put these under a reuse-friendly license and to implement technologies that allow machine-readable content and data to be harvested and collated into a big data pool.

The Advanced Open Access means:

  • Free to read
  • Free to re-use, revise, remix, redistribute
  • Easy to discover and harvest
  • Content automatically summarised by aggregators
  • Data and narrative integrated to the widest extent possible
  • Human- and computer-readable formats
  • Community-based, pre- and post-publication peer-review
  • Community ownership of data
  • Free to publish or at low cost affordable by all

BDJ shortens the distance between "narrative" (text) and "data" publishing. Many data types, such as species occurrences, checklists, measurements and others, are converted into text from spreadsheets for better readability by humans. Conversely, text from an article can be downloaded as structured data or harvested by computers for further analysis.

"Open access is definitely one of the greatest steps in scientific communication comparable to the invention of the printing technology or the peer-review system. Great but not sufficient!" said Prof. Lyubomir Penev, founder of Pensoft Publishers and the Biodiversity Data Journal. "We need to switch the focus already from making content 'available for free download' to being discoverable and extractable. Such re-usability multiplies society's investment in science".

 

###
 

Additional information:

The Biodiversity Data Journal is designed by Pensoft Publishers and was funded in part by the European Union's Seventh Framework Program (FP7) project ViBRANT.

Source: Smith V, Georgiev T, Stoev P, Biserkov J, Miller J, Livermore L, Baker E, Mietchen D, Couvreur T, Mueller G, Dikow T, Helgen K, Frank J, Agosti D, Roberts D, Penev L (2013) Beyond dead trees: integrating the scientific process in the Biodiversity Data Journal. Biodiversity Data Journal 1: e995. DOI: 10.3897/BDJ.1.e995

 

 





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Taking the data out of paper

Ecological modellers require reliable sources of data for their analysis. Often, these sources are databases, checklists and specimen labels. Yet another rich source is the corpus of biological literature. It is estimated that there are well over 100 million pages of scientific publications and the volume grows every year. Publishing in advanced XML-based journals, such as Zookeys, Phytokeys or the Biodiversity Data Journal is recommended for new data, but what is the solution for legacy texts?

The EU FP7 project pro-iBiosphere has been piloting the mark-up and extraction of biological information from literature, which has been pioneered by Plazi (Agosti & Egloff, 2009). The EU FP7 Coordination and Support Action "pro-iBiosphere" was launched to investigate ways to increase the accessibility of biodiversity data, improve the efficiency of its curation and increase the user base of biodiversity data consumers and applications. The project addresses the technical and semantic interoperability between different forms in which data are published and analyses the sustainability issues related to the maintenance and curation of biodiversity data and derived information and knowledge. It also involves encouraging the biodiversity community to publish biodiversity data in a way that satisfies the technical requirements for an envisioned Open Biodiversity Knowledge Management System.

In order to reach these objectives three pilots for data mark-up and one for interoperability are being conducted (for detailed information on the pilots please see here). The mark-up pilots are evaluating accessibility of data within literature for a wide range of organisms and data types; and ways to facilitate  extraction of biological information from literature, including observations, traits, nomenclature, habitat information and interactions between organisms. For example, one pilot is looking at biogeographic data using the species Chenopodium vulvaria as a subject. In another, trait data is being extracted from literature on tropical mistletoes; while yet others are extracting data from papers on spiders, ants, centipedes, mosses and fungi.

In order to extract these data one can use either "born" digital texts or scanned texts, converted through text capture. These texts are then progressively marked up into XML documents, with tags defining the meaning of the containing text. The degree of mark-up granularity and the choice of textual elements to be marked-up depend on the type of data to be extracted and its granularity in the text. In taxonomically based literature, text is usually divided into the individual "treatments" for each species. Fortunately, most paragraph elements of these texts are in standard formats, for example, separate blocks of text contain the physical description of the organism, details of the distribution and habitat information, often separated with sub-headings.

The pro-iBiosphere pilots have used several methods for mark-up, but the main tool has been the GoldenGate Editor, which combines manual and automated methods to identify key text elements. For example, an algorithm identifies Latin names and then an interface guides the user through the verification of the algorithm’s results. Once marked-up, the XML document can be uploaded to the Plazi document repository. Plazi is a not-for-profit organization devoted to promoting open-access to taxonomic literature. You are free to use the data contained in Plazi’s repository and if you want you can refine the mark-up for your own purposes.

Extracting data from the legacy literature can be expensive. Modern XML based publications have additional advantages of linkages via DOI identifiers, and immediate dissemination to harvesters like EOL or GBIF. Yet, digitisation and mark-up has the possibility to reanimate the data in our publications, making them almost as useful as modern linked publications.

Task 3.4 of EU-BON is to develop tools to prepare, extract and mine published biodiversity literature (led by Plazi - Donat Agosti). For this task Plazi is looking for rich sources of data from the biodiversity literature, particularly where those data can be applied within other EU-BON tasks. For further information please contact Plazi

Agosti, D., & Egloff, W. (2009). Taxonomic information exchange and copyright: the Plazi approach. BMC research notes, 2(1), 53. doi:10.1186/1756-0500-2-53

Quentin Groom (National Botanic Garden, Belgium) & Donat Agosti (Plazi)