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“Early Women in Science” Profiles Trailblazing Women

“Early Women in Science” is an online exhibition of 16 women scientists who began their work before 1922. A Biodiversity Heritage Library exhibition, it profiles forward-thinking […]

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Panda Semen from China arrives at Zoo

Caitlin Burrell, research scientist at the Smithsonian Conservation Biology Institute, returned from China last night April 20, with frozen giant panda semen that had been […]

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In Belize, Critically endangered wrasse now favorite food of invasive lionfish

Scientists examining the stomach contents of invasive lionfish caught on the inner barrier reef of Belize have discovered that nearly half of the diet of […]

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Miniaturized GPS Tags Allow Tracking of Small Songbirds for first time

For the first time, researchers at the Smithsonian Conservation Biology Institute’s Migratory Bird Center have accurately tracked small migratory ovenbirds (Seiurus aurocapilla) to their tropical […]

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Digitized, Searchable Archives Help Revive ‘Sleeping’ Languages

Like other kids at summer camp, a group of youngsters in the cities of Miami, Okla. and Fort Wayne, Ind. play games, work on crafts […]

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Trapped in Amber: Ancient fossils reveal remarkable stability of Caribbean lizard communities

Tiny Anolis lizards preserved since the Miocene in amber are giving scientists a true appreciation of the meaning of community stability. Dating back some 15 […]

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Warming may shrink ancient range of heat loving desert lizard

The Mojave Desert and Death Valley are among the hottest, driest places in North America. So how might climate change impact a resilient reptile that […]

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DNA solves puzzle of catfish dinners

DNA analysis is proving to be a valuable tool for scientists trying to gauge the environmental impact that invasive blue catfish (Ictalurus furcatus) and flathead […]

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National Zoo Opens New Home for Appalachian Salamanders

Salamanders are typically elusive animals and adept at hiding, but National Zoo visitors will have a chance to see a variety of different amphibian species […]

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Event Horizon Telescope Reveals Magnetic Fields at Milky Way’s Central Black Hole

Most people think of black holes as giant vacuum cleaners sucking in everything that gets too close. But the supermassive black holes at the centers […]

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Smithsonian-Cornell Partnership produces First Domestic Puppies by In Vitro Fertilization

After decades of attempts, Smithsonian Conservation Biology Institute (SCBI) scientists and researchers at Cornell University have become the first to successfully use in vitro fertilization […]

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New Study Helps Smithsonian Scientists Prioritize Frogs at Risk of Extinction

Scientists at the Smithsonian Institution and partners have published a paper that will help them save Panamanian frog species from extinction due to a deadly […]

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Globular Clusters Could Nurture Interstellar Civilizations

Globular star clusters are extraordinary in almost every way. They’re densely packed, holding a million stars in a ball only about 100 light-years across on […]

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Meet Juan Rodriguez, panda keeper at the National Zoo

Bei Bei, Bao Bao, Tian Tian. Many people recognize the names of the giant pandas that reside at the Smithsonian’s National Zoo. Yet Juan Rodriguez […]

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What happens at the National Zoo when it snows?

Snowstorms and blizzards send people to raid supermarkets and prepare their homes for days of staying indoors, but how do the animals at the Smithsonian’s […]

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Smithsonian Scientists Solve Puzzle of Dramatic Wood Thrush Decline

For the past 50 years, the number of wood thrush (Hylocichla mustelina) that breed in the United States has decreased more than 60 percent. However, […]

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New horse-sized tyrannosaur with big brain reveals how “T. rex” became top predator

Pop quiz! Name the first five dinosaurs that come to mind. Chances are good that one you named was Tyrannosaurs rex, a popular favorite perhaps best […]

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Smithsonian Discovery: 46-million-year-old beetle had zinc jaws

Remember the scene in Moonraker where Robert Kiel, as the steel-toothed character Jaws, bites through a tram cable that sends Roger Moore’s James Bond sprawling? […]

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Rare Zebras graze at Smithsonian

For the first time in more than 15 years zebras will graze the fields at the Smithsonian Conservation Biology Institute in Front Royal, Va. Three […]

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Bizarre new marine worms covered in bristles, wrinkles & bumps

An extraordinary arrangement of bristles, wrinkles and wart-like bumps cover the cold skin of Sphaerephesia amphorata, a new deep-sea worm described and named by researchers […]

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A Planet in Peril: Q&A with Suzan Murray of the Smithsonian Global Health Program

With roughly 5,500 individuals remaining in the wild, the black rhino population is critically endangered. To help save these iconic African giants, at risk for […]

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Fishy Caribbean ‘juveniles’ recognized as new species

Living in deep reefs in the Atlantic Ocean, the banded basslet, a small and colorful species with a wide range of distribution, has long been […]

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Our Galaxy’s Black Hole is Spewing Planet-size “Spitballs”

Every few thousand years, an unlucky star wanders too close to the black hole at the center of the Milky Way. The black hole’s powerful […]

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  • Science & Nature
  • Space
  • Center for Astrophysics | Harvard & Smithsonian
  • Milky Way
  • Smithsonian Astrophysical Observatory

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Paleo-detectives energize great whale mystery: how & when baleen evolved

A bizarre change occurs in the mouth of a humpback whale during its development in the womb. Several dozen tooth buds sprout in a row […]

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There’s more to extraterrestrial life than planets in “habitable zone” orbits

Two separate teams of scientists have identified major challenges for the development of life in what has recently become one of the most famous exoplanet […]

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Gold nanotechnology and lasers used to successfully freeze fish embryos

For more than 60 years, researchers have tried to successfully cryopreserve (or freeze) the embryo of zebrafish, a species that is an important medical model […]

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Sumatran tiger cub born National Zoo

Great Cats keepers at the Smithsonian’s National Zoo are celebrating the birth of a Sumatran tiger, a critically endangered species. The cub’s mother, 8-year-old Damai, […]

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Zoo scientists honored at Golden Goose

Three former scientists from the Smithsonian’s National Zoological Park–Ellen Lamirande, Don Nichols, and Allan Pessier–were honored at the sixth annual Golden Goose Award ceremony at […]

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Meet the newest New World canopy beetle species. ‘Gazillions’ await discovery.

“Somber” is the adjective Smithsonian beetle expert Terry Erwin uses to describe the insects he collects on the forest floor in Peru and Ecuador. “They […]

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Five fun turtle and tortoise facts from the Smithsonian’s National Zoo

People often use the words turtle and tortoise interchangeably, but these reptiles have distinct differences: Turtle shells are typically more flattened and not as deeply […]

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How do National Zoo animals beat the heat? Bloodsicles and other frozen delicacies

When the heat and humidity of the Washington, D.C. summer sends its residents scrambling for air conditioning and iced coffee, the animal care specialists at […]

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  • Animals
  • Science & Nature
  • Smithsonian's National Zoo

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Structure–function study of AKR4C14, an aldo-keto reductase from Thai jasmine rice (Oryza sativa L. ssp. indica cv. KDML105)

Aldo-keto reductases (AKRs) are NADPH/NADP+-dependent oxidoreductase enzymes that metabolize an aldehyde/ketone to the corresponding alcohol. AKR4C14 from rice exhibits a much higher efficiency in metabolizing malondialdehyde (MDA) than do the Arabidopsis enzymes AKR4C8 and AKR4C9, despite sharing greater than 60% amino-acid sequence identity. This study confirms the role of rice AKR4C14 in the detoxification of methylglyoxal and MDA, and demonstrates that the endogenous contents of both aldehydes in transgenic Arabidopsis ectopically expressing AKR4C14 are significantly lower than their levels in the wild type. The apo structure of indica rice AKR4C14 was also determined in the absence of the cofactor, revealing the stabilized open conformation. This is the first crystal structure in AKR subfamily 4C from rice to be observed in the apo form (without bound NADP+). The refined AKR4C14 structure reveals a stabilized open conformation of loop B, suggesting the initial phase prior to cofactor binding. Based on the X-ray crystal structure, the substrate- and cofactor-binding pockets of AKR4C14 are formed by loops A, B, C and β1α1. Moreover, the residues Ser211 and Asn220 on loop B are proposed as the hinge residues that are responsible for conformational alteration while the cofactor binds. The open conformation of loop B is proposed to involve Phe216 pointing out from the cofactor-binding site and the opening of the safety belt. Structural comparison with other AKRs in subfamily 4C emphasizes the role of the substrate-channel wall, consisting of Trp24, Trp115, Tyr206, Phe216, Leu291 and Phe295, in substrate discrimination. In particular, Leu291 could contribute greatly to substrate selectivity, explaining the preference of AKR4C14 for its straight-chain aldehyde substrate.




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Structural basis of carbohydrate binding in domain C of a type I pullulanase from Paenibacillus barengoltzii

Pullulanase (EC 3.2.1.41) is a well known starch-debranching enzyme that catalyzes the cleavage of α-1,6-glycosidic linkages in α-glucans such as starch and pullulan. Crystal structures of a type I pullulanase from Paenibacillus barengoltzii (PbPulA) and of PbPulA in complex with maltopentaose (G5), maltohexaose (G6)/α-cyclodextrin (α-CD) and β-cyclodextrin (β-CD) were determined in order to better understand substrate binding to this enzyme. PbPulA belongs to glycoside hydrolase (GH) family 13 subfamily 14 and is composed of three domains (CBM48, A and C). Three carbohydrate-binding sites identified in PbPulA were located in CBM48, near the active site and in domain C, respectively. The binding site in CBM48 was specific for β-CD, while that in domain C has not been reported for other pullulanases. The domain C binding site had higher affinity for α-CD than for G6; a small motif (FGGEH) seemed to be one of the major determinants for carbohydrate binding in this domain. Structure-based mutations of several surface-exposed aromatic residues in CBM48 and domain C had a debilitating effect on the activity of the enzyme. These results suggest that both CBM48 and domain C play a role in binding substrates. The crystal forms described contribute to the understanding of pullulanase domain–carbohydrate interactions.




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New Book: “Only the Wing: Reimar Horten’s Epic Quest to Stabilize and Control the All-Wing Aircraft”

Only the Wing is a new book by Russell Lee that recounts Horten's epic quest to stabalize and control the all-wing aircraft.

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The dimeric organization that enhances the microtubule end-binding affinity of EB1 is susceptible to phosphorylation [RESEARCH ARTICLE]

Yinlong Song, Yikan Zhang, Ying Pan, Jianfeng He, Yan Wang, Wei Chen, Jing Guo, Haiteng Deng, Yi Xue, Xianyang Fang, and Xin Liang

Microtubules dynamics is regulated by the plus end-tracking proteins (+TIPs) in cells. End binding protein 1 (EB1) acts as a master regulator in +TIPs networks by targeting microtubule growing ends and recruiting other factors. However, the molecular mechanism of how EB1 binds to microtubule ends with a high affinity remains to be an open question. Using single-molecule imaging, we show that the end-binding kinetics of EB1 changes along with the polymerizing and hydrolysis rate of tubulin dimers, confirming the binding of EB1 to GTP/GDP-Pi tubulin at microtubule growing ends. The affinity of wild-type EB1 to these sites is higher than monomeric EB1 mutants, suggesting that two CH domains in the dimer contribute to the end-binding. Introducing phosphomimicking mutations into the linker domain of EB1 weakens the end-binding affinity and confers a more curved conformation to EB1 dimer without compromising dimerization, suggesting that the overall architecture of EB1 is important for the end-binding affinity. Taken together, our results provide insights into understanding how the high-affinity end-binding of EB1 can be achieved and how this activity may be regulated in cells.




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EML4-ALK V3 oncogenic fusion proteins promote microtubule stabilization and accelerated migration through NEK9 and NEK7 [RESEARCH ARTICLE]

Laura O'Regan, Giancarlo Barone, Rozita Adib, Chang Gok Woo, Hui Jeong Jeong, Emily L. Richardson, Mark W. Richards, Patricia A.J. Muller, Spencer J. Collis, Dean A. Fennell, Jene Choi, Richard Bayliss, and Andrew M. Fry

EML4-ALK is an oncogenic fusion present in ~5% non-small cell lung cancers. However, alternative breakpoints in the EML4 gene lead to distinct variants with different patient outcomes. Here, we show in cell models that EML4-ALK variant 3 (V3), which is linked to accelerated metastatic spread, causes microtubule stabilization, formation of extended cytoplasmic protrusions and increased cell migration. It also recruits the NEK9 and NEK7 kinase to microtubules via the N-terminal EML4 microtubule-binding region. Overexpression of wild-type EML4 as well as constitutive activation of NEK9 also perturb cell morphology and accelerate migration in a microtubule-dependent manner that requires the downstream kinase NEK7 but not ALK activity. Strikingly, elevated NEK9 expression is associated with reduced progression-free survival in EML4-ALK patients. Hence, we propose that EML4-ALK V3 promotes microtubule stabilization through NEK9 and NEK7 leading to increased cell migration. This represents a novel actionable pathway that could drive metastatic disease progression in EML4-ALK lung cancer.




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Compartmentalization of adenosine metabolism in cancer cells and its modulation during acute hypoxia [RESEARCH ARTICLE]

Karolina Losenkova, Mariachiara Zuccarini, Marika Karikoski, Juha Laurila, Detlev Boison, Sirpa Jalkanen, and Gennady G. Yegutkin

Extracellular adenosine mediates diverse anti-inflammatory, angiogenic and vasoactive effects and becomes an important therapeutic target for cancer, which has been translated into clinical trials. This study was designed to comprehensively assess adenosine metabolism in prostate and breast cancer cells. We identified cellular adenosine turnover as a complex cascade, comprised of (a) the ectoenzymatic breakdown of ATP via sequential nucleotide pyrophosphatase/phosphodiesterase-1, ecto-5’-nucleotidase/CD73 and adenosine deaminase reactions, and ATP re-synthesis through counteracting adenylate kinase and nucleoside diphosphokinase; (b) the uptake of nucleotide-derived adenosine via equilibrative nucleoside transporters; and (c) the intracellular adenosine phosphorylation into ATP by adenosine kinase and other nucleotide kinases. The exposure of cancer cells to 1% O2 for 24 hours triggered ~2-fold up-regulation of CD73, without affecting nucleoside transporters, adenosine kinase activity and cellular ATP content. The ability of adenosine to inhibit the tumor-initiating potential of breast cancer cells via receptor-independent mechanism was confirmed in vivo using a xenograft mouse model. The existence of redundant pathways controlling extracellular and intracellular adenosine provides a sufficient justification for reexamination of the current concepts of cellular purine homeostasis and signaling in cancer.




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Osh6 requires Ist2 for localization to the ER-PM contacts and efficient phosphatidylserine transport [RESEARCH ARTICLE]

Juan Martin D'Ambrosio, Veronique Albanese, Nicolas-Frederic Lipp, Lucile Fleuriot, Delphine Debayle, Guillaume Drin, and Alenka Copic

Osh6 and Osh7 are lipid transfer proteins (LTPs) that move phosphatidylserine (PS) from the endoplasmic reticulum (ER) to the plasma membrane (PM). High PS level at the PM is key for many cellular functions. Intriguingly, Osh6/7 localize to ER-PM contact sites, although they lack membrane-targeting motifs, in contrast to multidomain LTPs that both bridge membranes and convey lipids. We show that Osh6 localization to contact sites depends on its interaction with the cytosolic tail of the ER-PM tether Ist2, a homologue of TMEM16 proteins. We identify a motif in the Ist2 tail, conserved in yeasts, as the Osh6-binding region, and we map an Ist2-binding surface on Osh6. Mutations in the Ist2 tail phenocopy osh6 osh7 deletion: they decrease cellular PS levels, and block PS transport to the PM. Our study unveils an unexpected partnership between a TMEM16-like protein and a soluble LTP, which together mediate lipid transport at contact sites.




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C3G localizes to mother centriole dependent on cenexin, and regulates centrosome duplication and primary cilia length [RESEARCH ARTICLE]

Sanjeev Chavan Nayak and Vegesna Radha

C3G (RapGEF1) plays a role in cell differentiation and is essential for early embryonic development in mice. In this study, we identify C3G as a centrosomal protein colocalizing with cenexin at the mother centriole in interphase cells. C3G interacts through its catalytic domain with cenexin, and they show interdependence for localization to the centrosome. C3G depletion caused a decrease in cellular cenexin levels. Centrosomal localization is lost as myocytes differentiate to form myotubes. Stable clone of cells depleted of C3G by CRISPR/Cas9 showed the presence of supernumerary centrioles. Overexpression of C3G, or a catalytically active deletion construct inhibited centrosome duplication. Cilia length is longer in C3G knockout cells, and the phenotype could be reverted upon reintroduction of C3G or its catalytic domain. Association of C3G with the basal body is dynamic, decreasing upon serum starvation, and increasing upon reentry into the cell cycle. C3G inhibits cilia formation and length dependent on its catalytic activity. We conclude that C3G inhibits centrosome duplication and maintains ciliary homeostasis, properties that may be important for its role in embryonic development.




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Smithsonian’s National Gem Collection acquires a yellow fluorite from Tanzania

Fluorite is well known and prized for its rich variety of colors, most commonly pale green, purple, yellow, orange, blue, pink and colorless. “We acquired this specimen because it is a very nice quality fluorite with an attractive color and it is large enough to be exhibited,” Curator Jeff Post says.

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Climate change expected to expand majority of ocean dead zones

A full 94 percent of the dead zones in the world’s oceans lie in regions expected to warm at least 2 degrees Celsius by the […]

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Glittering, mesmerizing, lifesaving: Hospital exhibit showcases minerals used in medicine

Have an upset stomach? Pop a chalky, chewable antacid. Maybe you’ve got a painful cut or burn. No problem; reach for a healing ointment or […]

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  • Earth Science
  • Science & Nature
  • National Museum of Natural History

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A new method for in situ structural investigations of nano-sized amorphous and crystalline materials using mixed-flow reactors

Structural investigations of amorphous and nanocrystalline phases forming in solution are historically challenging. Few methods are capable of in situ atomic structural analysis and rigorous control of the system. A mixed-flow reactor (MFR) is used for total X-ray scattering experiments to examine the short- and long-range structure of phases in situ with pair distribution function (PDF) analysis. The adaptable experimental setup enables data collection for a range of different system chemistries, initial supersaturations and residence times. The age of the sample during analysis is controlled by adjusting the flow rate. Faster rates allow for younger samples to be examined, but if flow is too fast not enough data are acquired to average out excess signal noise. Slower flow rates form older samples, but at very slow speeds particles settle and block flow, clogging the system. Proper background collection and subtraction is critical for data optimization. Overall, this MFR method is an ideal scheme for analyzing the in situ structures of phases that form during crystal growth in solution. As a proof of concept, high-resolution total X-ray scattering data of amorphous and crystalline calcium phosphates and amorphous calcium carbonate were collected for PDF analysis.