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Rediscovering School Quality Reviews

Resurrecting an old idea about assessing school quality could allow schools to examine a broad range of data on performance and practices and lead to improvement.




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Death, wearing a crown and accompanied by monsters, rides a white horse that tramples on men, women and children. Etching by J. Haynes, 1784, after J.H. Mortimer.

London (Norfolk Street, Strand) : J. Mortimer, Jany. 1st 1784.




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Conquering fat logic : how to overcome what we tell oursleves about diets, weight, and metabolism / Nadja Hermann.

London : Scribe, 2019.




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Paul brings herbs to refresh Virginie after she has performed a long walk barefoot. Stipple engraving by J.P. Simon after C.P. Landon.

A Paris (rue St Denis No. 214) : chez Bance aîné, [1810?]




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A woman walking towards the left and covering her face with her robe. Etching after S. Rosa.




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Bernard Gilpin making peace among the warring clans on the English Border with Scotland. Photograph after W.B. Scott.

[19--?]




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A nakhan or diplomatic officer of the Burmese court, seated, wearing robes. Coloured etching by J.H. Newton, 1828.

London (Old Bond Street) : published by John Warren ; [London] (Ave Maria Lane) : G & W.B. Whittaker, [between 1800 and 1899]




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Partnering to Reduce Achievement Gaps in New Mexico

A school leader outlines how research findings on reducing achievement gaps are reflected in practice at her New Mexico school.




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The Inspiring Legacy of Flint's First Black Superintendent, Dead From Coronavirus

Nathel Burtley, 79, was a lifelong educator who led the Flint, Mich., school system, paving the way for other African-American educators to become the heads of districts. He died earlier this month from the coronavirus.




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One More Teacher Wins State Seat, Bringing Count to 43

One more teacher was elected to state legislature in a closely contested race.




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How one NHL team is preparing to reopen its arena

The San Jose Sharks are considering different scenarios in how to handle the return of hockey. The questions the Sharks are asking themselves are likely the same ones the Caps are as everyone waits for the end of the coronavirus pandemic.




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Needle sharing among intravenous drug abusers: national and international perspectives / Editors, Robert J. Battjes, Roy W. Pickens.

Rockville, Maryland : National Institute on Drug Abuse, 1988.




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Drug use before and during drug abuse treatment : 1979-1981 TOPS admission cohorts / S. Gail Craddock, Robert M. Bray, Robert L. Hubbard.

Rockville, Maryland : National Institute on Drug Abuse, 1985.




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Evaluation of drug abuse treatments : based on first year followup : national followup study of admissions to drug abuse treatments in the DARP during 1969-1972.

Rockville, Maryland : National Institute on Drug Abuse, 1978.




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Monitoring and evaluation : alcoholism and other drug dependence services.

Chicago, Ill. : Joint Commission on Accreditation of Healthcare Organizations, 1987.




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Policy and guidelines for the provision of needle and syringe exchange services to young people / Tom Aldridge and Andrew Preston.

[Dorchester] : Dorset Community NHS Trust, 1997.




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Sydney Wiese, recovering from coronavirus, continually talking with friends and family: 'Our world is uniting'

Hear how former Oregon State guard and current member of the WNBA's LA Sparks Sydney Wiese is recovering from a COVID-19 diagnosis, seeing friends and family show support and love during a trying time.




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Former OSU guard Sydney Wiese talks unwavering support while recovering from coronavirus

Pac-12 Networks' Mike Yam interviews former Oregon State guard Sydney Wiese to hear how she's recovering from contracting COVID-19. Wiese recounts her recent travel and how she's been lifted up by steadfast support from friends, family and fellow WNBA players. See more from Wiese during "Pac-12 Playlist" on Monday, April 6 at 7 p.m. PT/ 8 p.m. MT on Pac-12 Network.




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New women's coach Schaefer answering a 'calling' to Texas

For Vic Schaefer, the decision to take over the Texas women's basketball program was profoundly personal. “It was a calling,” Schaefer said Monday, noting the old Austin hospital building where he was born is just across the street from where the Longhorns play at the Frank Erwin Center. Texas quickly snatched up Schaefer on Sunday, just two days after athletic director Chris Del Conte announced coach Karen Aston would not be retained after eight seasons.




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WNBA Draft Profile: Productive forward Ruthy Hebard has uncanny handling, scoring, rebounding ability

Ruthy Hebard, who ranks 2nd in Oregon history in points (2,368) and 3rd in rebounds (1,299), prepares to play in the WNBA following four years in Eugene. Hebard is the Oregon and Pac-12 all-time leader in career field-goal percentage (65.1) and averaged 17.3 points per game and a career-high 9.6 rebounds per game as a senior.




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UCLA's Natalie Chou on her role models, inspiring Asian-American girls in basketball

Pac-12 Networks' Mike Yam has a conversation with UCLA's Natalie Chou during Wednesday's "Pac-12 Perspective" podcast. Chou reflects on her role models, passion for basketball and how her mom has made a big impact on her hoops career.




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Model-based clustering with envelopes

Wenjing Wang, Xin Zhang, Qing Mai.

Source: Electronic Journal of Statistics, Volume 14, Number 1, 82--109.

Abstract:
Clustering analysis is an important unsupervised learning technique in multivariate statistics and machine learning. In this paper, we propose a set of new mixture models called CLEMM (in short for Clustering with Envelope Mixture Models) that is based on the widely used Gaussian mixture model assumptions and the nascent research area of envelope methodology. Formulated mostly for regression models, envelope methodology aims for simultaneous dimension reduction and efficient parameter estimation, and includes a very recent formulation of envelope discriminant subspace for classification and discriminant analysis. Motivated by the envelope discriminant subspace pursuit in classification, we consider parsimonious probabilistic mixture models where the cluster analysis can be improved by projecting the data onto a latent lower-dimensional subspace. The proposed CLEMM framework and the associated envelope-EM algorithms thus provide foundations for envelope methods in unsupervised and semi-supervised learning problems. Numerical studies on simulated data and two benchmark data sets show significant improvement of our propose methods over the classical methods such as Gaussian mixture models, K-means and hierarchical clustering algorithms. An R package is available at https://github.com/kusakehan/CLEMM.




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A Bayesian approach to disease clustering using restricted Chinese restaurant processes

Claudia Wehrhahn, Samuel Leonard, Abel Rodriguez, Tatiana Xifara.

Source: Electronic Journal of Statistics, Volume 14, Number 1, 1449--1478.

Abstract:
Identifying disease clusters (areas with an unusually high incidence of a particular disease) is a common problem in epidemiology and public health. We describe a Bayesian nonparametric mixture model for disease clustering that constrains clusters to be made of adjacent areal units. This is achieved by modifying the exchangeable partition probability function associated with the Ewen’s sampling distribution. We call the resulting prior the Restricted Chinese Restaurant Process, as the associated full conditional distributions resemble those associated with the standard Chinese Restaurant Process. The model is illustrated using synthetic data sets and in an application to oral cancer mortality in Germany.




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$k$-means clustering of extremes

Anja Janßen, Phyllis Wan.

Source: Electronic Journal of Statistics, Volume 14, Number 1, 1211--1233.

Abstract:
The $k$-means clustering algorithm and its variant, the spherical $k$-means clustering, are among the most important and popular methods in unsupervised learning and pattern detection. In this paper, we explore how the spherical $k$-means algorithm can be applied in the analysis of only the extremal observations from a data set. By making use of multivariate extreme value analysis we show how it can be adopted to find “prototypes” of extremal dependence and derive a consistency result for our suggested estimator. In the special case of max-linear models we show furthermore that our procedure provides an alternative way of statistical inference for this class of models. Finally, we provide data examples which show that our method is able to find relevant patterns in extremal observations and allows us to classify extremal events.




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Modal clustering asymptotics with applications to bandwidth selection

Alessandro Casa, José E. Chacón, Giovanna Menardi.

Source: Electronic Journal of Statistics, Volume 14, Number 1, 835--856.

Abstract:
Density-based clustering relies on the idea of linking groups to some specific features of the probability distribution underlying the data. The reference to a true, yet unknown, population structure allows framing the clustering problem in a standard inferential setting, where the concept of ideal population clustering is defined as the partition induced by the true density function. The nonparametric formulation of this approach, known as modal clustering, draws a correspondence between the groups and the domains of attraction of the density modes. Operationally, a nonparametric density estimate is required and a proper selection of the amount of smoothing, governing the shape of the density and hence possibly the modal structure, is crucial to identify the final partition. In this work, we address the issue of density estimation for modal clustering from an asymptotic perspective. A natural and easy to interpret metric to measure the distance between density-based partitions is discussed, its asymptotic approximation explored, and employed to study the problem of bandwidth selection for nonparametric modal clustering.




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Profile likelihood biclustering

Cheryl Flynn, Patrick Perry.

Source: Electronic Journal of Statistics, Volume 14, Number 1, 731--768.

Abstract:
Biclustering, the process of simultaneously clustering the rows and columns of a data matrix, is a popular and effective tool for finding structure in a high-dimensional dataset. Many biclustering procedures appear to work well in practice, but most do not have associated consistency guarantees. To address this shortcoming, we propose a new biclustering procedure based on profile likelihood. The procedure applies to a broad range of data modalities, including binary, count, and continuous observations. We prove that the procedure recovers the true row and column classes when the dimensions of the data matrix tend to infinity, even if the functional form of the data distribution is misspecified. The procedure requires computing a combinatorial search, which can be expensive in practice. Rather than performing this search directly, we propose a new heuristic optimization procedure based on the Kernighan-Lin heuristic, which has nice computational properties and performs well in simulations. We demonstrate our procedure with applications to congressional voting records, and microarray analysis.




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Path-Based Spectral Clustering: Guarantees, Robustness to Outliers, and Fast Algorithms

We consider the problem of clustering with the longest-leg path distance (LLPD) metric, which is informative for elongated and irregularly shaped clusters. We prove finite-sample guarantees on the performance of clustering with respect to this metric when random samples are drawn from multiple intrinsically low-dimensional clusters in high-dimensional space, in the presence of a large number of high-dimensional outliers. By combining these results with spectral clustering with respect to LLPD, we provide conditions under which the Laplacian eigengap statistic correctly determines the number of clusters for a large class of data sets, and prove guarantees on the labeling accuracy of the proposed algorithm. Our methods are quite general and provide performance guarantees for spectral clustering with any ultrametric. We also introduce an efficient, easy to implement approximation algorithm for the LLPD based on a multiscale analysis of adjacency graphs, which allows for the runtime of LLPD spectral clustering to be quasilinear in the number of data points.




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Connecting Spectral Clustering to Maximum Margins and Level Sets

We study the connections between spectral clustering and the problems of maximum margin clustering, and estimation of the components of level sets of a density function. Specifically, we obtain bounds on the eigenvectors of graph Laplacian matrices in terms of the between cluster separation, and within cluster connectivity. These bounds ensure that the spectral clustering solution converges to the maximum margin clustering solution as the scaling parameter is reduced towards zero. The sensitivity of maximum margin clustering solutions to outlying points is well known, but can be mitigated by first removing such outliers, and applying maximum margin clustering to the remaining points. If outliers are identified using an estimate of the underlying probability density, then the remaining points may be seen as an estimate of a level set of this density function. We show that such an approach can be used to consistently estimate the components of the level sets of a density function under very mild assumptions.




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Lower Bounds for Testing Graphical Models: Colorings and Antiferromagnetic Ising Models

We study the identity testing problem in the context of spin systems or undirected graphical models, where it takes the following form: given the parameter specification of the model $M$ and a sampling oracle for the distribution $mu_{M^*}$ of an unknown model $M^*$, can we efficiently determine if the two models $M$ and $M^*$ are the same? We consider identity testing for both soft-constraint and hard-constraint systems. In particular, we prove hardness results in two prototypical cases, the Ising model and proper colorings, and explore whether identity testing is any easier than structure learning. For the ferromagnetic (attractive) Ising model, Daskalakis et al. (2018) presented a polynomial-time algorithm for identity testing. We prove hardness results in the antiferromagnetic (repulsive) setting in the same regime of parameters where structure learning is known to require a super-polynomial number of samples. Specifically, for $n$-vertex graphs of maximum degree $d$, we prove that if $|eta| d = omega(log{n})$ (where $eta$ is the inverse temperature parameter), then there is no polynomial running time identity testing algorithm unless $RP=NP$. In the hard-constraint setting, we present hardness results for identity testing for proper colorings. Our results are based on the presumed hardness of #BIS, the problem of (approximately) counting independent sets in bipartite graphs.




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Causal Discovery Toolbox: Uncovering causal relationships in Python

This paper presents a new open source Python framework for causal discovery from observational data and domain background knowledge, aimed at causal graph and causal mechanism modeling. The cdt package implements an end-to-end approach, recovering the direct dependencies (the skeleton of the causal graph) and the causal relationships between variables. It includes algorithms from the `Bnlearn' and `Pcalg' packages, together with algorithms for pairwise causal discovery such as ANM.




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Latent Simplex Position Model: High Dimensional Multi-view Clustering with Uncertainty Quantification

High dimensional data often contain multiple facets, and several clustering patterns can co-exist under different variable subspaces, also known as the views. While multi-view clustering algorithms were proposed, the uncertainty quantification remains difficult --- a particular challenge is in the high complexity of estimating the cluster assignment probability under each view, and sharing information among views. In this article, we propose an approximate Bayes approach --- treating the similarity matrices generated over the views as rough first-stage estimates for the co-assignment probabilities; in its Kullback-Leibler neighborhood, we obtain a refined low-rank matrix, formed by the pairwise product of simplex coordinates. Interestingly, each simplex coordinate directly encodes the cluster assignment uncertainty. For multi-view clustering, we let each view draw a parameterization from a few candidates, leading to dimension reduction. With high model flexibility, the estimation can be efficiently carried out as a continuous optimization problem, hence enjoys gradient-based computation. The theory establishes the connection of this model to a random partition distribution under multiple views. Compared to single-view clustering approaches, substantially more interpretable results are obtained when clustering brains from a human traumatic brain injury study, using high-dimensional gene expression data.




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Optimal Bipartite Network Clustering

We study bipartite community detection in networks, or more generally the network biclustering problem. We present a fast two-stage procedure based on spectral initialization followed by the application of a pseudo-likelihood classifier twice. Under mild regularity conditions, we establish the weak consistency of the procedure (i.e., the convergence of the misclassification rate to zero) under a general bipartite stochastic block model. We show that the procedure is optimal in the sense that it achieves the optimal convergence rate that is achievable by a biclustering oracle, adaptively over the whole class, up to constants. This is further formalized by deriving a minimax lower bound over a class of biclustering problems. The optimal rate we obtain sharpens some of the existing results and generalizes others to a wide regime of average degree growth, from sparse networks with average degrees growing arbitrarily slowly to fairly dense networks with average degrees of order $sqrt{n}$. As a special case, we recover the known exact recovery threshold in the $log n$ regime of sparsity. To obtain the consistency result, as part of the provable version of the algorithm, we introduce a sub-block partitioning scheme that is also computationally attractive, allowing for distributed implementation of the algorithm without sacrificing optimality. The provable algorithm is derived from a general class of pseudo-likelihood biclustering algorithms that employ simple EM type updates. We show the effectiveness of this general class by numerical simulations.




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Kymatio: Scattering Transforms in Python

The wavelet scattering transform is an invariant and stable signal representation suitable for many signal processing and machine learning applications. We present the Kymatio software package, an easy-to-use, high-performance Python implementation of the scattering transform in 1D, 2D, and 3D that is compatible with modern deep learning frameworks, including PyTorch and TensorFlow/Keras. The transforms are implemented on both CPUs and GPUs, the latter offering a significant speedup over the former. The package also has a small memory footprint. Source code, documentation, and examples are available under a BSD license at https://www.kymat.io.




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Union of Low-Rank Tensor Spaces: Clustering and Completion

We consider the problem of clustering and completing a set of tensors with missing data that are drawn from a union of low-rank tensor spaces. In the clustering problem, given a partially sampled tensor data that is composed of a number of subtensors, each chosen from one of a certain number of unknown tensor spaces, we need to group the subtensors that belong to the same tensor space. We provide a geometrical analysis on the sampling pattern and subsequently derive the sampling rate that guarantees the correct clustering under some assumptions with high probability. Moreover, we investigate the fundamental conditions for finite/unique completability for the union of tensor spaces completion problem. Both deterministic and probabilistic conditions on the sampling pattern to ensure finite/unique completability are obtained. For both the clustering and completion problems, our tensor analysis provides significantly better bound than the bound given by the matrix analysis applied to any unfolding of the tensor data.




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Measuring symmetry and asymmetry of multiplicative distortion measurement errors data

Jun Zhang, Yujie Gai, Xia Cui, Gaorong Li.

Source: Brazilian Journal of Probability and Statistics, Volume 34, Number 2, 370--393.

Abstract:
This paper studies the measure of symmetry or asymmetry of a continuous variable under the multiplicative distortion measurement errors setting. The unobservable variable is distorted in a multiplicative fashion by an observed confounding variable. First, two direct plug-in estimation procedures are proposed, and the empirical likelihood based confidence intervals are constructed to measure the symmetry or asymmetry of the unobserved variable. Next, we propose four test statistics for testing whether the unobserved variable is symmetric or not. The asymptotic properties of the proposed estimators and test statistics are examined. We conduct Monte Carlo simulation experiments to examine the performance of the proposed estimators and test statistics. These methods are applied to analyze a real dataset for an illustration.




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Reliability estimation in a multicomponent stress-strength model for Burr XII distribution under progressive censoring

Raj Kamal Maurya, Yogesh Mani Tripathi.

Source: Brazilian Journal of Probability and Statistics, Volume 34, Number 2, 345--369.

Abstract:
We consider estimation of the multicomponent stress-strength reliability under progressive Type II censoring under the assumption that stress and strength variables follow Burr XII distributions with a common shape parameter. Maximum likelihood estimates of the reliability are obtained along with asymptotic intervals when common shape parameter may be known or unknown. Bayes estimates are also derived under the squared error loss function using different approximation methods. Further, we obtain exact Bayes and uniformly minimum variance unbiased estimates of the reliability for the case common shape parameter is known. The highest posterior density intervals are also obtained. We perform Monte Carlo simulations to compare the performance of proposed estimates and present a discussion based on this study. Finally, two real data sets are analyzed for illustration purposes.




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A Bayesian sparse finite mixture model for clustering data from a heterogeneous population

Erlandson F. Saraiva, Adriano K. Suzuki, Luís A. Milan.

Source: Brazilian Journal of Probability and Statistics, Volume 34, Number 2, 323--344.

Abstract:
In this paper, we introduce a Bayesian approach for clustering data using a sparse finite mixture model (SFMM). The SFMM is a finite mixture model with a large number of components $k$ previously fixed where many components can be empty. In this model, the number of components $k$ can be interpreted as the maximum number of distinct mixture components. Then, we explore the use of a prior distribution for the weights of the mixture model that take into account the possibility that the number of clusters $k_{mathbf{c}}$ (e.g., nonempty components) can be random and smaller than the number of components $k$ of the finite mixture model. In order to determine clusters we develop a MCMC algorithm denominated Split-Merge allocation sampler. In this algorithm, the split-merge strategy is data-driven and was inserted within the algorithm in order to increase the mixing of the Markov chain in relation to the number of clusters. The performance of the method is verified using simulated datasets and three real datasets. The first real data set is the benchmark galaxy data, while second and third are the publicly available data set on Enzyme and Acidity, respectively.




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Influence measures for the Waring regression model

Luisa Rivas, Manuel Galea.

Source: Brazilian Journal of Probability and Statistics, Volume 33, Number 2, 402--424.

Abstract:
In this paper, we present a regression model where the response variable is a count data that follows a Waring distribution. The Waring regression model allows for analysis of phenomena where the Geometric regression model is inadequate, because the probability of success on each trial, $p$, is different for each individual and $p$ has an associated distribution. Estimation is performed by maximum likelihood, through the maximization of the $Q$-function using EM algorithm. Diagnostic measures are calculated for this model. To illustrate the results, an application to real data is presented. Some specific details are given in the Appendix of the paper.




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Figuring racism in medieval Christianity

Kaplan, M. Lindsay, author.
9780190678241 hardcover alkaline paper




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Variable selection methods for model-based clustering

Michael Fop, Thomas Brendan Murphy.

Source: Statistics Surveys, Volume 12, 18--65.

Abstract:
Model-based clustering is a popular approach for clustering multivariate data which has seen applications in numerous fields. Nowadays, high-dimensional data are more and more common and the model-based clustering approach has adapted to deal with the increasing dimensionality. In particular, the development of variable selection techniques has received a lot of attention and research effort in recent years. Even for small size problems, variable selection has been advocated to facilitate the interpretation of the clustering results. This review provides a summary of the methods developed for variable selection in model-based clustering. Existing R packages implementing the different methods are indicated and illustrated in application to two data analysis examples.




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Measuring multivariate association and beyond

Julie Josse, Susan Holmes.

Source: Statistics Surveys, Volume 10, 132--167.

Abstract:
Simple correlation coefficients between two variables have been generalized to measure association between two matrices in many ways. Coefficients such as the RV coefficient, the distance covariance (dCov) coefficient and kernel based coefficients are being used by different research communities. Scientists use these coefficients to test whether two random vectors are linked. Once it has been ascertained that there is such association through testing, then a next step, often ignored, is to explore and uncover the association’s underlying patterns. This article provides a survey of various measures of dependence between random vectors and tests of independence and emphasizes the connections and differences between the various approaches. After providing definitions of the coefficients and associated tests, we present the recent improvements that enhance their statistical properties and ease of interpretation. We summarize multi-table approaches and provide scenarii where the indices can provide useful summaries of heterogeneous multi-block data. We illustrate these different strategies on several examples of real data and suggest directions for future research.




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Finite mixture models and model-based clustering

Volodymyr Melnykov, Ranjan Maitra

Source: Statist. Surv., Volume 4, 80--116.

Abstract:
Finite mixture models have a long history in statistics, having been used to model population heterogeneity, generalize distributional assumptions, and lately, for providing a convenient yet formal framework for clustering and classification. This paper provides a detailed review into mixture models and model-based clustering. Recent trends as well as open problems in the area are also discussed.




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Excess registered deaths in England and Wales during the COVID-19 pandemic, March 2020 and April 2020. (arXiv:2004.11355v4 [stat.AP] UPDATED)

Official counts of COVID-19 deaths have been criticized for potentially including people who did not die of COVID-19 but merely died with COVID-19. I address that critique by fitting a generalized additive model to weekly counts of all registered deaths in England and Wales during the 2010s. The model produces baseline rates of death registrations expected in the absence of the COVID-19 pandemic, and comparing those baselines to recent counts of registered deaths exposes the emergence of excess deaths late in March 2020. Among adults aged 45+, about 38,700 excess deaths were registered in the 5 weeks comprising 21 March through 24 April (612 $pm$ 416 from 21$-$27 March, 5675 $pm$ 439 from 28 March through 3 April, then 9183 $pm$ 468, 12,712 $pm$ 589, and 10,511 $pm$ 567 in April's next 3 weeks). Both the Office for National Statistics's respective count of 26,891 death certificates which mention COVID-19, and the Department of Health and Social Care's hospital-focused count of 21,222 deaths, are appreciably less, implying that their counting methods have underestimated rather than overestimated the pandemic's true death toll. If underreporting rates have held steady, about 45,900 direct and indirect COVID-19 deaths might have been registered by April's end but not yet publicly reported in full.




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Capturing and Explaining Trajectory Singularities using Composite Signal Neural Networks. (arXiv:2003.10810v2 [cs.LG] UPDATED)

Spatial trajectories are ubiquitous and complex signals. Their analysis is crucial in many research fields, from urban planning to neuroscience. Several approaches have been proposed to cluster trajectories. They rely on hand-crafted features, which struggle to capture the spatio-temporal complexity of the signal, or on Artificial Neural Networks (ANNs) which can be more efficient but less interpretable. In this paper we present a novel ANN architecture designed to capture the spatio-temporal patterns characteristic of a set of trajectories, while taking into account the demographics of the navigators. Hence, our model extracts markers linked to both behaviour and demographics. We propose a composite signal analyser (CompSNN) combining three simple ANN modules. Each of these modules uses different signal representations of the trajectory while remaining interpretable. Our CompSNN performs significantly better than its modules taken in isolation and allows to visualise which parts of the signal were most useful to discriminate the trajectories.




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DualSMC: Tunneling Differentiable Filtering and Planning under Continuous POMDPs. (arXiv:1909.13003v4 [cs.LG] UPDATED)

A major difficulty of solving continuous POMDPs is to infer the multi-modal distribution of the unobserved true states and to make the planning algorithm dependent on the perceived uncertainty. We cast POMDP filtering and planning problems as two closely related Sequential Monte Carlo (SMC) processes, one over the real states and the other over the future optimal trajectories, and combine the merits of these two parts in a new model named the DualSMC network. In particular, we first introduce an adversarial particle filter that leverages the adversarial relationship between its internal components. Based on the filtering results, we then propose a planning algorithm that extends the previous SMC planning approach [Piche et al., 2018] to continuous POMDPs with an uncertainty-dependent policy. Crucially, not only can DualSMC handle complex observations such as image input but also it remains highly interpretable. It is shown to be effective in three continuous POMDP domains: the floor positioning domain, the 3D light-dark navigation domain, and a modified Reacher domain.




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Additive Bayesian variable selection under censoring and misspecification. (arXiv:1907.13563v3 [stat.ME] UPDATED)

We study the interplay of two important issues on Bayesian model selection (BMS): censoring and model misspecification. We consider additive accelerated failure time (AAFT), Cox proportional hazards and probit models, and a more general concave log-likelihood structure. A fundamental question is what solution can one hope BMS to provide, when (inevitably) models are misspecified. We show that asymptotically BMS keeps any covariate with predictive power for either the outcome or censoring times, and discards other covariates. Misspecification refers to assuming the wrong model or functional effect on the response, including using a finite basis for a truly non-parametric effect, or omitting truly relevant covariates. We argue for using simple models that are computationally practical yet attain good power to detect potentially complex effects, despite misspecification. Misspecification and censoring both have an asymptotically negligible effect on (suitably-defined) false positives, but their impact on power is exponential. We portray these issues via simple descriptions of early/late censoring and the drop in predictive accuracy due to misspecification. From a methods point of view, we consider local priors and a novel structure that combines local and non-local priors to enforce sparsity. We develop algorithms to capitalize on the AAFT tractability, approximations to AAFT and probit likelihoods giving significant computational gains, a simple augmented Gibbs sampler to hierarchically explore linear and non-linear effects, and an implementation in the R package mombf. We illustrate the proposed methods and others based on likelihood penalties via extensive simulations under misspecification and censoring. We present two applications concerning the effect of gene expression on colon and breast cancer.




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Predictive Modeling of ICU Healthcare-Associated Infections from Imbalanced Data. Using Ensembles and a Clustering-Based Undersampling Approach. (arXiv:2005.03582v1 [cs.LG])

Early detection of patients vulnerable to infections acquired in the hospital environment is a challenge in current health systems given the impact that such infections have on patient mortality and healthcare costs. This work is focused on both the identification of risk factors and the prediction of healthcare-associated infections in intensive-care units by means of machine-learning methods. The aim is to support decision making addressed at reducing the incidence rate of infections. In this field, it is necessary to deal with the problem of building reliable classifiers from imbalanced datasets. We propose a clustering-based undersampling strategy to be used in combination with ensemble classifiers. A comparative study with data from 4616 patients was conducted in order to validate our proposal. We applied several single and ensemble classifiers both to the original dataset and to data preprocessed by means of different resampling methods. The results were analyzed by means of classic and recent metrics specifically designed for imbalanced data classification. They revealed that the proposal is more efficient in comparison with other approaches.




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Fair Algorithms for Hierarchical Agglomerative Clustering. (arXiv:2005.03197v1 [cs.LG])

Hierarchical Agglomerative Clustering (HAC) algorithms are extensively utilized in modern data science and machine learning, and seek to partition the dataset into clusters while generating a hierarchical relationship between the data samples themselves. HAC algorithms are employed in a number of applications, such as biology, natural language processing, and recommender systems. Thus, it is imperative to ensure that these algorithms are fair-- even if the dataset contains biases against certain protected groups, the cluster outputs generated should not be discriminatory against samples from any of these groups. However, recent work in clustering fairness has mostly focused on center-based clustering algorithms, such as k-median and k-means clustering. Therefore, in this paper, we propose fair algorithms for performing HAC that enforce fairness constraints 1) irrespective of the distance linkage criteria used, 2) generalize to any natural measures of clustering fairness for HAC, 3) work for multiple protected groups, and 4) have competitive running times to vanilla HAC. To the best of our knowledge, this is the first work that studies fairness for HAC algorithms. We also propose an algorithm with lower asymptotic time complexity than HAC algorithms that can rectify existing HAC outputs and make them subsequently fair as a result. Moreover, we carry out extensive experiments on multiple real-world UCI datasets to demonstrate the working of our algorithms.




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History of Pre-Modern Medicine Seminar Series, Spring 2018

The History of Pre-Modern Medicine seminar series returns this month. The 2017–18 series – organised by a group of historians of medicine based at London universities and hosted by the Wellcome Library – will conclude with four seminars. The series… Continue reading




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Plague in Italy and Europe during the 17th century

The next seminar in the 2017–18 History of Pre-Modern Medicine seminar series takes place on Tuesday 30 January. Speaker: Professor Guido Alfani (Bocconi University, Milan) Plague in Italy and Europe during the 17th century: epidemiology and impact Abstract: After many years of relative… Continue reading