ow Statistical inference for autoregressive models under heteroscedasticity of unknown form By projecteuclid.org Published On :: Wed, 30 Oct 2019 22:03 EDT Ke Zhu. Source: The Annals of Statistics, Volume 47, Number 6, 3185--3215.Abstract: This paper provides an entire inference procedure for the autoregressive model under (conditional) heteroscedasticity of unknown form with a finite variance. We first establish the asymptotic normality of the weighted least absolute deviations estimator (LADE) for the model. Second, we develop the random weighting (RW) method to estimate its asymptotic covariance matrix, leading to the implementation of the Wald test. Third, we construct a portmanteau test for model checking, and use the RW method to obtain its critical values. As a special weighted LADE, the feasible adaptive LADE (ALADE) is proposed and proved to have the same efficiency as its infeasible counterpart. The importance of our entire methodology based on the feasible ALADE is illustrated by simulation results and the real data analysis on three U.S. economic data sets. Full Article
ow Exact lower bounds for the agnostic probably-approximately-correct (PAC) machine learning model By projecteuclid.org Published On :: Fri, 02 Aug 2019 22:04 EDT Aryeh Kontorovich, Iosif Pinelis. Source: The Annals of Statistics, Volume 47, Number 5, 2822--2854.Abstract: We provide an exact nonasymptotic lower bound on the minimax expected excess risk (EER) in the agnostic probably-approximately-correct (PAC) machine learning classification model and identify minimax learning algorithms as certain maximally symmetric and minimally randomized “voting” procedures. Based on this result, an exact asymptotic lower bound on the minimax EER is provided. This bound is of the simple form $c_{infty}/sqrt{ u}$ as $ u oinfty$, where $c_{infty}=0.16997dots$ is a universal constant, $ u=m/d$, $m$ is the size of the training sample and $d$ is the Vapnik–Chervonenkis dimension of the hypothesis class. It is shown that the differences between these asymptotic and nonasymptotic bounds, as well as the differences between these two bounds and the maximum EER of any learning algorithms that minimize the empirical risk, are asymptotically negligible, and all these differences are due to ties in the mentioned “voting” procedures. A few easy to compute nonasymptotic lower bounds on the minimax EER are also obtained, which are shown to be close to the exact asymptotic lower bound $c_{infty}/sqrt{ u}$ even for rather small values of the ratio $ u=m/d$. As an application of these results, we substantially improve existing lower bounds on the tail probability of the excess risk. Among the tools used are Bayes estimation and apparently new identities and inequalities for binomial distributions. Full Article
ow A unified treatment of multiple testing with prior knowledge using the p-filter By projecteuclid.org Published On :: Fri, 02 Aug 2019 22:04 EDT Aaditya K. Ramdas, Rina F. Barber, Martin J. Wainwright, Michael I. Jordan. Source: The Annals of Statistics, Volume 47, Number 5, 2790--2821.Abstract: There is a significant literature on methods for incorporating knowledge into multiple testing procedures so as to improve their power and precision. Some common forms of prior knowledge include (a) beliefs about which hypotheses are null, modeled by nonuniform prior weights; (b) differing importances of hypotheses, modeled by differing penalties for false discoveries; (c) multiple arbitrary partitions of the hypotheses into (possibly overlapping) groups and (d) knowledge of independence, positive or arbitrary dependence between hypotheses or groups, suggesting the use of more aggressive or conservative procedures. We present a unified algorithmic framework called p-filter for global null testing and false discovery rate (FDR) control that allows the scientist to incorporate all four types of prior knowledge (a)–(d) simultaneously, recovering a variety of known algorithms as special cases. Full Article
ow TFisher: A powerful truncation and weighting procedure for combining $p$-values By projecteuclid.org Published On :: Wed, 15 Apr 2020 22:05 EDT Hong Zhang, Tiejun Tong, John Landers, Zheyang Wu. Source: The Annals of Applied Statistics, Volume 14, Number 1, 178--201.Abstract: The $p$-value combination approach is an important statistical strategy for testing global hypotheses with broad applications in signal detection, meta-analysis, data integration, etc. In this paper we extend the classic Fisher’s combination method to a unified family of statistics, called TFisher, which allows a general truncation-and-weighting scheme of input $p$-values. TFisher can significantly improve statistical power over the Fisher and related truncation-only methods for detecting both rare and dense “signals.” To address wide applications, analytical calculations for TFisher’s size and power are deduced under any two continuous distributions in the null and the alternative hypotheses. The corresponding omnibus test (oTFisher) and its size calculation are also provided for data-adaptive analysis. We study the asymptotic optimal parameters of truncation and weighting based on Bahadur efficiency (BE). A new asymptotic measure, called the asymptotic power efficiency (APE), is also proposed for better reflecting the statistics’ performance in real data analysis. Interestingly, under the Gaussian mixture model in the signal detection problem, both BE and APE indicate that the soft-thresholding scheme is the best, the truncation and weighting parameters should be equal. By simulations of various signal patterns, we systematically compare the power of statistics within TFisher family as well as some rare-signal-optimal tests. We illustrate the use of TFisher in an exome-sequencing analysis for detecting novel genes of amyotrophic lateral sclerosis. Relevant computation has been implemented into an R package TFisher published on the Comprehensive R Archive Network to cater for applications. Full Article
ow A statistical analysis of noisy crowdsourced weather data By projecteuclid.org Published On :: Wed, 15 Apr 2020 22:05 EDT Arnab Chakraborty, Soumendra Nath Lahiri, Alyson Wilson. Source: The Annals of Applied Statistics, Volume 14, Number 1, 116--142.Abstract: Spatial prediction of weather elements like temperature, precipitation, and barometric pressure are generally based on satellite imagery or data collected at ground stations. None of these data provide information at a more granular or “hyperlocal” resolution. On the other hand, crowdsourced weather data, which are captured by sensors installed on mobile devices and gathered by weather-related mobile apps like WeatherSignal and AccuWeather, can serve as potential data sources for analyzing environmental processes at a hyperlocal resolution. However, due to the low quality of the sensors and the nonlaboratory environment, the quality of the observations in crowdsourced data is compromised. This paper describes methods to improve hyperlocal spatial prediction using this varying-quality, noisy crowdsourced information. We introduce a reliability metric, namely Veracity Score (VS), to assess the quality of the crowdsourced observations using a coarser, but high-quality, reference data. A VS-based methodology to analyze noisy spatial data is proposed and evaluated through extensive simulations. The merits of the proposed approach are illustrated through case studies analyzing crowdsourced daily average ambient temperature readings for one day in the contiguous United States. Full Article
ow Efficient real-time monitoring of an emerging influenza pandemic: How feasible? By projecteuclid.org Published On :: Wed, 15 Apr 2020 22:05 EDT Paul J. Birrell, Lorenz Wernisch, Brian D. M. Tom, Leonhard Held, Gareth O. Roberts, Richard G. Pebody, Daniela De Angelis. Source: The Annals of Applied Statistics, Volume 14, Number 1, 74--93.Abstract: A prompt public health response to a new epidemic relies on the ability to monitor and predict its evolution in real time as data accumulate. The 2009 A/H1N1 outbreak in the UK revealed pandemic data as noisy, contaminated, potentially biased and originating from multiple sources. This seriously challenges the capacity for real-time monitoring. Here, we assess the feasibility of real-time inference based on such data by constructing an analytic tool combining an age-stratified SEIR transmission model with various observation models describing the data generation mechanisms. As batches of data become available, a sequential Monte Carlo (SMC) algorithm is developed to synthesise multiple imperfect data streams, iterate epidemic inferences and assess model adequacy amidst a rapidly evolving epidemic environment, substantially reducing computation time in comparison to standard MCMC, to ensure timely delivery of real-time epidemic assessments. In application to simulated data designed to mimic the 2009 A/H1N1 epidemic, SMC is shown to have additional benefits in terms of assessing predictive performance and coping with parameter nonidentifiability. Full Article
ow Bayesian methods for multiple mediators: Relating principal stratification and causal mediation in the analysis of power plant emission controls By projecteuclid.org Published On :: Wed, 16 Oct 2019 22:03 EDT Chanmin Kim, Michael J. Daniels, Joseph W. Hogan, Christine Choirat, Corwin M. Zigler. Source: The Annals of Applied Statistics, Volume 13, Number 3, 1927--1956.Abstract: Emission control technologies installed on power plants are a key feature of many air pollution regulations in the US. While such regulations are predicated on the presumed relationships between emissions, ambient air pollution and human health, many of these relationships have never been empirically verified. The goal of this paper is to develop new statistical methods to quantify these relationships. We frame this problem as one of mediation analysis to evaluate the extent to which the effect of a particular control technology on ambient pollution is mediated through causal effects on power plant emissions. Since power plants emit various compounds that contribute to ambient pollution, we develop new methods for multiple intermediate variables that are measured contemporaneously, may interact with one another, and may exhibit joint mediating effects. Specifically, we propose new methods leveraging two related frameworks for causal inference in the presence of mediating variables: principal stratification and causal mediation analysis. We define principal effects based on multiple mediators, and also introduce a new decomposition of the total effect of an intervention on ambient pollution into the natural direct effect and natural indirect effects for all combinations of mediators. Both approaches are anchored to the same observed-data models, which we specify with Bayesian nonparametric techniques. We provide assumptions for estimating principal causal effects, then augment these with an additional assumption required for causal mediation analysis. The two analyses, interpreted in tandem, provide the first empirical investigation of the presumed causal pathways that motivate important air quality regulatory policies. Full Article
ow Stratonovich type integration with respect to fractional Brownian motion with Hurst parameter less than $1/2$ By projecteuclid.org Published On :: Mon, 27 Apr 2020 04:02 EDT Jorge A. León. Source: Bernoulli, Volume 26, Number 3, 2436--2462.Abstract: Let $B^{H}$ be a fractional Brownian motion with Hurst parameter $Hin (0,1/2)$ and $p:mathbb{R} ightarrow mathbb{R}$ a polynomial function. The main purpose of this paper is to introduce a Stratonovich type stochastic integral with respect to $B^{H}$, whose domain includes the process $p(B^{H})$. That is, an integral that allows us to integrate $p(B^{H})$ with respect to $B^{H}$, which does not happen with the symmetric integral given by Russo and Vallois ( Probab. Theory Related Fields 97 (1993) 403–421) in general. Towards this end, we combine the approaches utilized by León and Nualart ( Stochastic Process. Appl. 115 (2005) 481–492), and Russo and Vallois ( Probab. Theory Related Fields 97 (1993) 403–421), whose aims are to extend the domain of the divergence operator for Gaussian processes and to define some stochastic integrals, respectively. Then, we study the relation between this Stratonovich integral and the extension of the divergence operator (see León and Nualart ( Stochastic Process. Appl. 115 (2005) 481–492)), an Itô formula and the existence of a unique solution of some Stratonovich stochastic differential equations. These last results have been analyzed by Alòs, León and Nualart ( Taiwanese J. Math. 5 (2001) 609–632), where the Hurst paramert $H$ belongs to the interval $(1/4,1/2)$. Full Article
ow A fast algorithm with minimax optimal guarantees for topic models with an unknown number of topics By projecteuclid.org Published On :: Mon, 27 Apr 2020 04:02 EDT Xin Bing, Florentina Bunea, Marten Wegkamp. Source: Bernoulli, Volume 26, Number 3, 1765--1796.Abstract: Topic models have become popular for the analysis of data that consists in a collection of n independent multinomial observations, with parameters $N_{i}inmathbb{N}$ and $Pi_{i}in[0,1]^{p}$ for $i=1,ldots,n$. The model links all cell probabilities, collected in a $p imes n$ matrix $Pi$, via the assumption that $Pi$ can be factorized as the product of two nonnegative matrices $Ain[0,1]^{p imes K}$ and $Win[0,1]^{K imes n}$. Topic models have been originally developed in text mining, when one browses through $n$ documents, based on a dictionary of $p$ words, and covering $K$ topics. In this terminology, the matrix $A$ is called the word-topic matrix, and is the main target of estimation. It can be viewed as a matrix of conditional probabilities, and it is uniquely defined, under appropriate separability assumptions, discussed in detail in this work. Notably, the unique $A$ is required to satisfy what is commonly known as the anchor word assumption, under which $A$ has an unknown number of rows respectively proportional to the canonical basis vectors in $mathbb{R}^{K}$. The indices of such rows are referred to as anchor words. Recent computationally feasible algorithms, with theoretical guarantees, utilize constructively this assumption by linking the estimation of the set of anchor words with that of estimating the $K$ vertices of a simplex. This crucial step in the estimation of $A$ requires $K$ to be known, and cannot be easily extended to the more realistic set-up when $K$ is unknown. This work takes a different view on anchor word estimation, and on the estimation of $A$. We propose a new method of estimation in topic models, that is not a variation on the existing simplex finding algorithms, and that estimates $K$ from the observed data. We derive new finite sample minimax lower bounds for the estimation of $A$, as well as new upper bounds for our proposed estimator. We describe the scenarios where our estimator is minimax adaptive. Our finite sample analysis is valid for any $n,N_{i},p$ and $K$, and both $p$ and $K$ are allowed to increase with $n$, a situation not handled well by previous analyses. We complement our theoretical results with a detailed simulation study. We illustrate that the new algorithm is faster and more accurate than the current ones, although we start out with a computational and theoretical disadvantage of not knowing the correct number of topics $K$, while we provide the competing methods with the correct value in our simulations. Full Article
ow Local differential privacy: Elbow effect in optimal density estimation and adaptation over Besov ellipsoids By projecteuclid.org Published On :: Mon, 27 Apr 2020 04:02 EDT Cristina Butucea, Amandine Dubois, Martin Kroll, Adrien Saumard. Source: Bernoulli, Volume 26, Number 3, 1727--1764.Abstract: We address the problem of non-parametric density estimation under the additional constraint that only privatised data are allowed to be published and available for inference. For this purpose, we adopt a recent generalisation of classical minimax theory to the framework of local $alpha$-differential privacy and provide a lower bound on the rate of convergence over Besov spaces $mathcal{B}^{s}_{pq}$ under mean integrated $mathbb{L}^{r}$-risk. This lower bound is deteriorated compared to the standard setup without privacy, and reveals a twofold elbow effect. In order to fulfill the privacy requirement, we suggest adding suitably scaled Laplace noise to empirical wavelet coefficients. Upper bounds within (at most) a logarithmic factor are derived under the assumption that $alpha$ stays bounded as $n$ increases: A linear but non-adaptive wavelet estimator is shown to attain the lower bound whenever $pgeq r$ but provides a slower rate of convergence otherwise. An adaptive non-linear wavelet estimator with appropriately chosen smoothing parameters and thresholding is shown to attain the lower bound within a logarithmic factor for all cases. Full Article
ow Sojourn time dimensions of fractional Brownian motion By projecteuclid.org Published On :: Mon, 27 Apr 2020 04:02 EDT Ivan Nourdin, Giovanni Peccati, Stéphane Seuret. Source: Bernoulli, Volume 26, Number 3, 1619--1634.Abstract: We describe the size of the sets of sojourn times $E_{gamma }={tgeq 0:|B_{t}|leq t^{gamma }}$ associated with a fractional Brownian motion $B$ in terms of various large scale dimensions. Full Article
ow Limit theorems for long-memory flows on Wiener chaos By projecteuclid.org Published On :: Fri, 31 Jan 2020 04:06 EST Shuyang Bai, Murad S. Taqqu. Source: Bernoulli, Volume 26, Number 2, 1473--1503.Abstract: We consider a long-memory stationary process, defined not through a moving average type structure, but by a flow generated by a measure-preserving transform and by a multiple Wiener–Itô integral. The flow is described using a notion of mixing for infinite-measure spaces introduced by Krickeberg (In Proc. Fifth Berkeley Sympos. Math. Statist. and Probability (Berkeley, Calif., 1965/66), Vol. II: Contributions to Probability Theory, Part 2 (1967) 431–446 Univ. California Press). Depending on the interplay between the spreading rate of the flow and the order of the multiple integral, one can recover known central or non-central limit theorems, and also obtain joint convergence of multiple integrals of different orders. Full Article
ow The Thomson family : fisherman in Buckhaven, retailers in Kapunda / compiled by Elizabeth Anne Howell. By www.catalog.slsa.sa.gov.au Published On :: Thomson (Family) Full Article
ow From the coalfields of Somerset to the Adelaide Hills and beyond : the story of the Hewish Family : three centuries of one family's journey through time / Maureen Brown. By www.catalog.slsa.sa.gov.au Published On :: Hewish Henry -- Family. Full Article
ow With a bottle of whisky in my hand : the family of James Grant and Isabella Masson / by Carolyn Cowgill. By www.catalog.slsa.sa.gov.au Published On :: Grant (Family) Full Article
ow List of family history books owned by Roy Klemm. By www.catalog.slsa.sa.gov.au Published On :: Family histories -- South Australia -- Bibliography. Full Article
ow Slow tain to Auschwitz : memoirs of a life in war and peace / Peter Kraus. By www.catalog.slsa.sa.gov.au Published On :: Kraus, Peter -- Biography. Full Article
ow How States, Assessment Companies Can Work Together Amid Coronavirus Testing Cancellations By marketbrief.edweek.org Published On :: Fri, 01 May 2020 15:17:53 +0000 Scott Marion, who consults states on testing, talks about why it's important for vendors and public officials to work cooperatively in renegotiating contracts amid assessment cancellations caused by COVID-19. The post How States, Assessment Companies Can Work Together Amid Coronavirus Testing Cancellations appeared first on Market Brief. Full Article Marketplace K-12 Assessments / Testing Business Strategy COVID-19 Procurement / Purchasing / RFPs
ow Item 07: A Journal of ye [the] Proceedings of his Majesty's Sloop Swallow, Captain Phillip [Philip] Carteret Commander, Commencing ye [the] 23 of July 1766 and ended [4 July 1767] By feedproxy.google.com Published On :: 5/05/2015 9:51:13 AM Full Article
ow Item 08: A Logg [Log] Book of the proceedings on Board His Majesty's Ship Swallow, Captain Philip Carteret Commander Commencing from the 20th August 1766 and Ending [21st May 1768] By feedproxy.google.com Published On :: 5/05/2015 12:19:15 PM Full Article
ow Item 10: Log book of the Swallow from 22 August 1767 to 4 June 1768 / by Philip Carteret By feedproxy.google.com Published On :: 5/05/2015 4:20:18 PM Full Article
ow Item 13: Swallow 1767, A journal of the proceedings on Board His Majesty's Sloop Swallow, commencing the 1st of March 1767 and Ended the 7th of July 1767 By feedproxy.google.com Published On :: 7/05/2015 12:42:02 PM Full Article
ow Item 01: Autograph letter signed, from Hume, Appin, to William E. Riley, concerning an account for money owed by Riley, 4 September 1834 By feedproxy.google.com Published On :: 14/07/2015 9:51:03 AM Full Article
ow Sydney in 1848 : illustrated by copper-plate engravings of its principal streets, public buildings, churches, chapels, etc. / from drawings by Joseph Fowles. By feedproxy.google.com Published On :: 28/04/2016 12:00:00 AM Full Article
ow Pence aimed to project normalcy during his trip to Iowa, but coronavirus got in the way By news.yahoo.com Published On :: Fri, 08 May 2020 21:35:24 -0400 Vice President Pence’s trip to Iowa shows how the Trump administration’s aims to move past coronavirus are sometimes complicated by the virus itself. Full Article
ow Coronavirus deals 'powerful blow' to Putin's grand plans By news.yahoo.com Published On :: Thu, 07 May 2020 22:09:16 -0400 The bombastic military parade through Moscow's Red Square on Saturday was slated to be the spectacle of the year on the Kremlin's calendar. Standing with Chinese leader Xi Jinping and French President Emmanuel Macron, President Vladimir Putin would have overseen a 90-minute procession of Russia's military might, showcasing 15,000 troops and the latest hardware. Now, military jets will roar over an eerily quiet Moscow, spurting red, white and blue smoke to mark 75 years since the defeat of Nazi Germany. Full Article
ow Cruz gets his hair cut at salon whose owner was jailed for defying Texas coronavirus restrictions By news.yahoo.com Published On :: Fri, 08 May 2020 19:28:43 -0400 After his haircut, Sen. Ted Cruz said, "It was ridiculous to see somebody sentenced to seven days in jail for cutting hair." Full Article
ow CNN legal analysts say Barr dropping the Flynn case shows 'the fix was in.' Barr says winners write history. By news.yahoo.com Published On :: Fri, 08 May 2020 08:23:00 -0400 The Justice Department announced Thursday that it is dropping its criminal case against President Trump's first national security adviser Michael Flynn. Flynn twice admitted in court he lied to the FBI about his conversations with Russia's U.S. ambassador, and then cooperated in Special Counsel Robert Mueller's investigation. It was an unusual move by the Justice Department, and CNN's legal and political analysts smelled a rat."Attorney General [William] Barr is already being accused of creating a special justice system just for President Trump's friends," and this will only feed that perception, CNN's Jake Tapper suggested. Political correspondent Sara Murray agreed, noting that the prosecutor in the case, Brandon Van Grack, withdrew right before the Justice Department submitted its filing, just like when Barr intervened to request a reduced sentence for Roger Stone.National security correspondent Jim Sciutto laid out several reason why the substance of Flynn's admitted lie was a big deal, and chief legal analyst Jeffrey Toobin was appalled. "It is one of the most incredible legal documents I have read, and certainly something that I never expected to see from the United States Department of Justice," Toobin said. "The idea that the Justice Department would invent an argument -- an argument that the judge in this case has already rejected -- and say that's a basis for dropping a case where a defendant admitted his guilt shows that this is a case where the fix was in."Barr told CBS News' Cathrine Herridge on Thursday that dropping Flynn's case actually "sends the message that there is one standard of justice in this country." Herridge told Barr he would take flak for this, asking: "When history looks back on this decision, how do you think it will be written?" Barr laughed: "Well, history's written by the winners. So it largely depends on who's writing the history." Watch below. More stories from theweek.com Outed CIA agent Valerie Plame is running for Congress, and her launch video looks like a spy movie trailer 7 scathing cartoons about America's rush to reopen Trump says he couldn't have exposed WWII vets to COVID-19 because the wind was blowing the wrong way Full Article
ow The Bayesian Update: Variational Formulations and Gradient Flows By projecteuclid.org Published On :: Mon, 13 Jan 2020 04:00 EST Nicolas Garcia Trillos, Daniel Sanz-Alonso. Source: Bayesian Analysis, Volume 15, Number 1, 29--56.Abstract: The Bayesian update can be viewed as a variational problem by characterizing the posterior as the minimizer of a functional. The variational viewpoint is far from new and is at the heart of popular methods for posterior approximation. However, some of its consequences seem largely unexplored. We focus on the following one: defining the posterior as the minimizer of a functional gives a natural path towards the posterior by moving in the direction of steepest descent of the functional. This idea is made precise through the theory of gradient flows, allowing to bring new tools to the study of Bayesian models and algorithms. Since the posterior may be characterized as the minimizer of different functionals, several variational formulations may be considered. We study three of them and their three associated gradient flows. We show that, in all cases, the rate of convergence of the flows to the posterior can be bounded by the geodesic convexity of the functional to be minimized. Each gradient flow naturally suggests a nonlinear diffusion with the posterior as invariant distribution. These diffusions may be discretized to build proposals for Markov chain Monte Carlo (MCMC) algorithms. By construction, the diffusions are guaranteed to satisfy a certain optimality condition, and rates of convergence are given by the convexity of the functionals. We use this observation to propose a criterion for the choice of metric in Riemannian MCMC methods. Full Article
ow Low Information Omnibus (LIO) Priors for Dirichlet Process Mixture Models By projecteuclid.org Published On :: Tue, 11 Jun 2019 04:00 EDT Yushu Shi, Michael Martens, Anjishnu Banerjee, Purushottam Laud. Source: Bayesian Analysis, Volume 14, Number 3, 677--702.Abstract: Dirichlet process mixture (DPM) models provide flexible modeling for distributions of data as an infinite mixture of distributions from a chosen collection. Specifying priors for these models in individual data contexts can be challenging. In this paper, we introduce a scheme which requires the investigator to specify only simple scaling information. This is used to transform the data to a fixed scale on which a low information prior is constructed. Samples from the posterior with the rescaled data are transformed back for inference on the original scale. The low information prior is selected to provide a wide variety of components for the DPM to generate flexible distributions for the data on the fixed scale. The method can be applied to all DPM models with kernel functions closed under a suitable scaling transformation. Construction of the low information prior, however, is kernel dependent. Using DPM-of-Gaussians and DPM-of-Weibulls models as examples, we show that the method provides accurate estimates of a diverse collection of distributions that includes skewed, multimodal, and highly dispersed members. With the recommended priors, repeated data simulations show performance comparable to that of standard empirical estimates. Finally, we show weak convergence of posteriors with the proposed priors for both kernels considered. Full Article
ow Statistical Molecule Counting in Super-Resolution Fluorescence Microscopy: Towards Quantitative Nanoscopy By projecteuclid.org Published On :: Tue, 03 Mar 2020 04:00 EST Thomas Staudt, Timo Aspelmeier, Oskar Laitenberger, Claudia Geisler, Alexander Egner, Axel Munk. Source: Statistical Science, Volume 35, Number 1, 92--111.Abstract: Super-resolution microscopy is rapidly gaining importance as an analytical tool in the life sciences. A compelling feature is the ability to label biological units of interest with fluorescent markers in (living) cells and to observe them with considerably higher resolution than conventional microscopy permits. The images obtained this way, however, lack an absolute intensity scale in terms of numbers of fluorophores observed. In this article, we discuss state of the art methods to count such fluorophores and statistical challenges that come along with it. In particular, we suggest a modeling scheme for time series generated by single-marker-switching (SMS) microscopy that makes it possible to quantify the number of markers in a statistically meaningful manner from the raw data. To this end, we model the entire process of photon generation in the fluorophore, their passage through the microscope, detection and photoelectron amplification in the camera, and extraction of time series from the microscopic images. At the heart of these modeling steps is a careful description of the fluorophore dynamics by a novel hidden Markov model that operates on two timescales (HTMM). Besides the fluorophore number, information about the kinetic transition rates of the fluorophore’s internal states is also inferred during estimation. We comment on computational issues that arise when applying our model to simulated or measured fluorescence traces and illustrate our methodology on simulated data. Full Article
ow Statistical Theory Powering Data Science By projecteuclid.org Published On :: Wed, 08 Jan 2020 04:00 EST Junhui Cai, Avishai Mandelbaum, Chaitra H. Nagaraja, Haipeng Shen, Linda Zhao. Source: Statistical Science, Volume 34, Number 4, 669--691.Abstract: Statisticians are finding their place in the emerging field of data science. However, many issues considered “new” in data science have long histories in statistics. Examples of using statistical thinking are illustrated, which range from exploratory data analysis to measuring uncertainty to accommodating nonrandom samples. These examples are then applied to service networks, baseball predictions and official statistics. Full Article
ow Larry Brown’s Work on Admissibility By projecteuclid.org Published On :: Wed, 08 Jan 2020 04:00 EST Iain M. Johnstone. Source: Statistical Science, Volume 34, Number 4, 657--668.Abstract: Many papers in the early part of Brown’s career focused on the admissibility or otherwise of estimators of a vector parameter. He established that inadmissibility of invariant estimators in three and higher dimensions is a general phenomenon, and found deep and beautiful connections between admissibility and other areas of mathematics. This review touches on several of his major contributions, with a focus on his celebrated 1971 paper connecting admissibility, recurrence and elliptic partial differential equations. Full Article
ow Larry Brown’s Contributions to Parametric Inference, Decision Theory and Foundations: A Survey By projecteuclid.org Published On :: Wed, 08 Jan 2020 04:00 EST James O. Berger, Anirban DasGupta. Source: Statistical Science, Volume 34, Number 4, 621--634.Abstract: This article gives a panoramic survey of the general area of parametric statistical inference, decision theory and foundations of statistics for the period 1965–2010 through the lens of Larry Brown’s contributions to varied aspects of this massive area. The article goes over sufficiency, shrinkage estimation, admissibility, minimaxity, complete class theorems, estimated confidence, conditional confidence procedures, Edgeworth and higher order asymptotic expansions, variational Bayes, Stein’s SURE, differential inequalities, geometrization of convergence rates, asymptotic equivalence, aspects of empirical process theory, inference after model selection, unified frequentist and Bayesian testing, and Wald’s sequential theory. A reasonably comprehensive bibliography is provided. Full Article
ow Comment: “Models as Approximations I: Consequences Illustrated with Linear Regression” by A. Buja, R. Berk, L. Brown, E. George, E. Pitkin, L. Zhan and K. Zhang By projecteuclid.org Published On :: Wed, 08 Jan 2020 04:00 EST Roderick J. Little. Source: Statistical Science, Volume 34, Number 4, 580--583. Full Article
ow 'Smoking is slow-motion suicide' / Biman Mullick. By search.wellcomelibrary.org Published On :: London (33 Stillness Rd, London, SE23 ING) : Cleanair, Campaign for a Smoke-free Environment, [198-?] Full Article
ow How can the smoker and the nonsmoker be equally free in the same place? George Bernard Shaw / Biman Mullick. By search.wellcomelibrary.org Published On :: [London?], [199-?] Full Article
ow The Joyful Reduction of Uncertainty: Music Perception as a Window to Predictive Neuronal Processing By www.jneurosci.org Published On :: 2020-04-01T09:30:19-07:00 Full Article
ow The 2019 Victoria’s Secret Fashion Show Is Canceled After Facing Backlash for Lack of Body Diversity By www.health.com Published On :: Fri, 22 Nov 2019 13:30:29 -0500 The reaction on social media has been fierce. Full Article
ow Blake Lively's Favorite Affordable Jeans Brand Is Having a Major Sale Right Now By www.health.com Published On :: Mon, 25 Nov 2019 16:40:00 -0500 Here's everything you need to know about Old Navy's Black Friday and Cyber Monday plans. Full Article
ow Kourtney Kardashian's Favorite Leggings Are So Good, Everyone Should Own A Pair By www.health.com Published On :: Mon, 26 Aug 2019 17:57:40 -0400 And they're on sale for Black Friday. Full Article
ow Multisensory Integration and the Society for Neuroscience: Then and Now By www.jneurosci.org Published On :: 2020-01-02 Barry E. SteinJan 2, 2020; 40:3-11Viewpoints Full Article
ow Grey Matter Volume Differences Associated with Extremely Low Levels of Cannabis Use in Adolescence By www.jneurosci.org Published On :: 2019-03-06 Catherine OrrMar 6, 2019; 39:1817-1827BehavioralSystemsCognitive Full Article
ow Interactions of Top-Down and Bottom-Up Mechanisms in Human Visual Cortex By www.jneurosci.org Published On :: 2011-01-12 Stephanie McMainsJan 12, 2011; 31:587-597BehavioralSystemsCognitive Full Article
ow Endothelial Adora2a Activation Promotes Blood-Brain Barrier Breakdown and Cognitive Impairment in Mice with Diet-Induced Insulin Resistance By www.jneurosci.org Published On :: 2019-05-22 Masaki YamamotoMay 22, 2019; 39:4179-4192Neurobiology of Disease Full Article
ow Visualization of Microtubule Growth in Cultured Neurons via the Use of EB3-GFP (End-Binding Protein 3-Green Fluorescent Protein) By www.jneurosci.org Published On :: 2003-04-01 Tatiana StepanovaApr 1, 2003; 23:2655-2664Cellular Full Article
ow Broadband Shifts in Local Field Potential Power Spectra Are Correlated with Single-Neuron Spiking in Humans By www.jneurosci.org Published On :: 2009-10-28 Jeremy R. ManningOct 28, 2009; 29:13613-13620BehavioralSystemsCognitive Full Article
ow A selective impairment of motion perception following lesions of the middle temporal visual area (MT) By www.jneurosci.org Published On :: 1988-06-01 WT NewsomeJun 1, 1988; 8:2201-2211Articles Full Article
ow Mice Deficient in Cellular Glutathione Peroxidase Show Increased Vulnerability to Malonate, 3-Nitropropionic Acid, and 1-Methyl-4-Phenyl-1,2,5,6-Tetrahydropyridine By www.jneurosci.org Published On :: 2000-01-01 Peter KlivenyiJan 1, 2000; 20:1-7Cellular Full Article
ow A novel slow (< 1 Hz) oscillation of neocortical neurons in vivo: depolarizing and hyperpolarizing components By www.jneurosci.org Published On :: 1993-08-01 M SteriadeAug 1, 1993; 13:3252-3265Articles Full Article