si EXAFS and XANES analysis of oxides at the nanoscale By journals.iucr.org Published On :: This work presents a discussion of the possibilities offered by X-ray absorption spectroscopy (XAS) to study the local structure of nanomaterials. The current state of the art for the interpretation of extended X-ray absorption fine structure (EXAFS), including an advanced approach based on the use of classical molecular dynamics, is described and exemplified in the case of NiO nanoparticles. In addition, the limits and possibilities of X-ray absorption near-edge spectroscopy (XANES) in determining several effects associated with the nanocrystalline nature of materials are also discussed in connection with the development of ZnO-based dilute magnetic semiconductors and iron oxide nanoparticles. Full Article text
si Binding site asymmetry in human transthyretin: insights from a joint neutron and X-ray crystallographic analysis using perdeuterated protein By journals.iucr.org Published On :: A neutron crystallographic study of perdeuterated transthyretin reveals important aspects of the structure relating to its stability and its propensity to form fibrils, as well as evidence of a single water molecule that affects the symmetry of the two binding pockets. Full Article text
si In-depth analysis of subclass-specific conformational preferences of IgG antibodies By journals.iucr.org Published On :: An extended analysis of structural ensembles obtained from small-angle X-ray scattering data reveals subclass-specific conformational preferences of IgG antibodies, which are largely determined by the hinge-region structure. Full Article text
si Precession electron diffraction – a topical review By journals.iucr.org Published On :: This topical review highlights progress made recently in the development and application of precession electron diffraction (PED) and its scanning variant for the determination of unknown crystal structures and the mapping of orientations at the nanoscale. Full Article text
si Earth's north magnetic pole is heading for Russia - The Independent Barents Observer By thebarentsobserver.com Published On :: Sun, 29 Dec 2019 08:00:00 GMT Earth's north magnetic pole is heading for Russia The Independent Barents Observer Full Article
si Ripon sinkhole concerns halt Harrogate council homes plans - BBC News By www.bbc.com Published On :: Thu, 03 Oct 2019 07:00:00 GMT Ripon sinkhole concerns halt Harrogate council homes plans BBC News Full Article
si Leading scientists set out resource challenge of meeting net zero emissions in the UK by 2050 - The Natural History Museum By www.nhm.ac.uk Published On :: Wed, 05 Jun 2019 07:00:00 GMT Leading scientists set out resource challenge of meeting net zero emissions in the UK by 2050 The Natural History Museum Full Article
si Biggest tremor on record at Little Plumpton site forces halt to fracking in Lancashire - Lancashire Evening Post By www.lep.co.uk Published On :: Tue, 11 Dec 2018 08:00:00 GMT Biggest tremor on record at Little Plumpton site forces halt to fracking in Lancashire Lancashire Evening Post Full Article
si Fracking in the UK was doomed a decade ago – Tories have wasted precious time on a fossil fuel fantasy - The Conversation UK By theconversation.com Published On :: Tue, 12 Nov 2019 08:00:00 GMT Fracking in the UK was doomed a decade ago – Tories have wasted precious time on a fossil fuel fantasy The Conversation UK Full Article
si Decision day looms over Ellesmere Port shale gas plan - Cheshire Live By www.cheshire-live.co.uk Published On :: Fri, 24 Jan 2020 08:00:00 GMT Decision day looms over Ellesmere Port shale gas plan Cheshire Live Full Article
si Two earthquakes felt by residents in Lochaber - Press and Journal By www.pressandjournal.co.uk Published On :: Thu, 14 Nov 2019 08:00:00 GMT Two earthquakes felt by residents in Lochaber Press and Journal Full Article
si London soil pollution worst on former Blitz bomb sites - Chemistry World By www.chemistryworld.com Published On :: Mon, 15 Jan 2018 08:00:00 GMT London soil pollution worst on former Blitz bomb sites Chemistry World Full Article
si What is a sinkhole and are they caused by bad weather? - expressandstar.com By www.expressandstar.com Published On :: Mon, 10 Feb 2020 08:00:00 GMT What is a sinkhole and are they caused by bad weather? expressandstar.com Full Article
si Holderness coast: Major cliff landslides 'every six years' - BBC News By www.bbc.com Published On :: Fri, 24 May 2019 07:00:00 GMT Holderness coast: Major cliff landslides 'every six years' BBC News Full Article
si UK's only active fracking site near Blackpool records largest ever earth tremor as homeowners complain of windows shaking - iNews By inews.co.uk Published On :: Sun, 25 Aug 2019 11:13:40 GMT UK's only active fracking site near Blackpool records largest ever earth tremor as homeowners complain of windows shaking iNews Full Article
si Viewpoint: UK government should pump money into computers for science - Science Business By sciencebusiness.net Published On :: Tue, 05 Nov 2019 08:00:00 GMT Viewpoint: UK government should pump money into computers for science Science Business Full Article
si Ripon sinkhole: British Geological Survey says area susceptible to holes - BBC News By www.bbc.co.uk Published On :: Sat, 12 Nov 2016 08:00:00 GMT Ripon sinkhole: British Geological Survey says area susceptible to holes BBC News Full Article
si Largest tremor yet detected at Lancashire fracking site - ITV News By www.itv.com Published On :: Mon, 26 Aug 2019 07:00:00 GMT Largest tremor yet detected at Lancashire fracking site ITV News Full Article
si Earth's North Magnetic Pole Keeps Drifting towards Siberia, Latest World Magnetic Model Shows | Geophysics, Geoscience - Sci-News.com By www.sci-news.com Published On :: Fri, 27 Dec 2019 08:00:00 GMT Earth's North Magnetic Pole Keeps Drifting towards Siberia, Latest World Magnetic Model Shows | Geophysics, Geoscience Sci-News.com Full Article
si Earth scientists plan to meld massive databases into a 'geological Google' - Science Magazine By www.sciencemag.org Published On :: Tue, 26 Feb 2019 08:00:00 GMT Earth scientists plan to meld massive databases into a 'geological Google' Science Magazine Full Article
si Fracking: UK shale gas reserves 'significantly lower than previous estimates' - Energy Live News - Energy Made Easy By www.energylivenews.com Published On :: Wed, 21 Aug 2019 07:00:00 GMT Fracking: UK shale gas reserves 'significantly lower than previous estimates' Energy Live News - Energy Made Easy Full Article
si Residents speak of shock after being woken by EARTHQUAKE in early hours of morning - Hartlepool Mail By www.hartlepoolmail.co.uk Published On :: Thu, 23 Jan 2020 08:00:00 GMT Residents speak of shock after being woken by EARTHQUAKE in early hours of morning Hartlepool Mail Full Article
si Researchers Describe Why Earth's Magnetic North Pole Is Straying Away From Canada Towards Siberia - The Digital Wise By thedigitalwise.com Published On :: Sat, 09 May 2020 06:54:00 GMT Researchers Describe Why Earth's Magnetic North Pole Is Straying Away From Canada Towards Siberia The Digital Wise Full Article
si Fracking firm Cuadrilla signs secret deal with geological agency to 'destroy confidential documents' - iNews By inews.co.uk Published On :: Fri, 23 Aug 2019 21:07:09 GMT Fracking firm Cuadrilla signs secret deal with geological agency to 'destroy confidential documents' iNews Full Article
si Riddle of 'bang' in Birmingham intensifies as British Geological Survey issue statement - Birmingham Live By www.birminghammail.co.uk Published On :: Tue, 19 Nov 2019 21:52:31 GMT Riddle of 'bang' in Birmingham intensifies as British Geological Survey issue statement Birmingham Live Full Article
si Scientists Explain Why Earth’s Magnetic North Pole Is Drifting Away From Canada Towards Siberia - Mashable India By in.mashable.com Published On :: Fri, 08 May 2020 13:10:00 GMT Scientists Explain Why Earth’s Magnetic North Pole Is Drifting Away From Canada Towards Siberia Mashable India Full Article
si British Geological Survey welcomes visit from Rushcliffe MP - Agg-Net By www.agg-net.com Published On :: Thu, 13 Feb 2020 08:00:00 GMT British Geological Survey welcomes visit from Rushcliffe MP Agg-Net Full Article
si Why the UK's streets have turned silent during coronavirus lockdown - Express.co.uk By www.express.co.uk Published On :: Wed, 29 Apr 2020 07:00:00 GMT Why the UK's streets have turned silent during coronavirus lockdown Express.co.uk Full Article
si Dramatic Fossil Shows a Squid-Like Creature Crushing a Fish in Its Jaws - Gizmodo UK By www.gizmodo.co.uk Published On :: Thu, 07 May 2020 22:00:00 GMT Dramatic Fossil Shows a Squid-Like Creature Crushing a Fish in Its Jaws Gizmodo UK Full Article
si Research Centre Finance Administrator job with UNIVERSITY OF LEEDS | 206139 - Times Higher Education (THE) By www.timeshighereducation.com Published On :: Thu, 07 May 2020 05:09:11 GMT Research Centre Finance Administrator job with UNIVERSITY OF LEEDS | 206139 Times Higher Education (THE) Full Article
si Fossil believed to show squid-like creature attacking fish 200 million years ago - Aberdeen Evening Express By www.eveningexpress.co.uk Published On :: Wed, 06 May 2020 15:01:00 GMT Fossil believed to show squid-like creature attacking fish 200 million years ago Aberdeen Evening Express Full Article
si Structure of a single-chain H2A/H2B dimer By scripts.iucr.org Published On :: 2020-04-28 Chromatin is the complex assembly of nucleic acids and proteins that makes up the physiological form of the eukaryotic genome. The nucleosome is the fundamental repeating unit of chromatin, and is composed of ∼147 bp of DNA wrapped around a histone octamer formed by two copies of each core histone: H2A, H2B, H3 and H4. Prior to nucleosome assembly, and during histone eviction, histones are typically assembled into soluble H2A/H2B dimers and H3/H4 dimers and tetramers. A multitude of factors interact with soluble histone dimers and tetramers, including chaperones, importins, histone-modifying enzymes and chromatin-remodeling enzymes. It is still unclear how many of these proteins recognize soluble histones; therefore, there is a need for new structural tools to study non-nucleosomal histones. Here, a single-chain, tailless Xenopus H2A/H2B dimer was created by directly fusing the C-terminus of H2B to the N-terminus of H2A. It is shown that this construct (termed scH2BH2A) is readily expressed in bacteria and can be purified under non-denaturing conditions. A 1.31 Å resolution crystal structure of scH2BH2A shows that it adopts a conformation that is nearly identical to that of nucleosomal H2A/H2B. This new tool is likely to facilitate future structural studies of many H2A/H2B-interacting proteins. Full Article text
si Chirality in Biological Nanospaces: Reactions in Active Sites. By Nilashis Nandi. Pp. 209. CRC Press, 2011. Price £79.99. ISBN 9781439840023. By journals.iucr.org Published On :: Full Article text
si Visualization Bench for the screening of crystallization assays and the automation of in situ experiments By journals.iucr.org Published On :: Full Article text
si Solution structure and assembly of β-amylase 2 from Arabidopsis thaliana By journals.iucr.org Published On :: Solution structure of β-amylase 2 from Arabidopsis thaliana shows the role of the conserved N-terminus in enzyme tetramer formation. Full Article text
si Sample deposition onto cryo-EM grids: from sprays to jets and back By journals.iucr.org Published On :: Sample preparation within single-particle cryo-electron microscopy can still be a significant bottleneck, with issues in reproducibility, ice quality and sample loss. New approaches have recently been reported that use spraying or pin printing instead of the traditional blotting approach. Here, experience in the use of different nozzle designs and spraying regimes is reported together with their influence on the resulting spray and grid quality. Full Article text
si The crystal structure of the heme d1 biosynthesis-associated small c-type cytochrome NirC reveals mixed oligomeric states in crystallo By journals.iucr.org Published On :: The crystal structure of the c-type cytochrome NirC from Pseudomonas aeruginosa has been determined and reveals the simultaneous presence of monomers and 3D domain-swapped dimers in the same asymmetric unit. Full Article text
si Ion permeation in potassium ion channels By journals.iucr.org Published On :: Key structural biology experiments that have sought to elucidate how potassium ions permeate and pass through the selectivity filter of potassium ion channels are reviewed. Full Article text
si Development of basic building blocks for cryo-EM: the emcore and emvis software libraries By journals.iucr.org Published On :: This article presents an overview of the development of two basic software libraries for image manipulation and data visualization in cryo-EM: emcore and emvis. Full Article text
si Structural and thermodynamic analysis of interactions between death-associated protein kinase 1 and anthraquinones By journals.iucr.org Published On :: Death-associated protein kinase 1 (DAPK1) was found to form a complex with purpurin and the crystal structure of the complex was determined. Purpurin may be a good lead compound for for the discovery of inhibitors of DAPK1. Full Article text
si Structural basis of carbohydrate binding in domain C of a type I pullulanase from Paenibacillus barengoltzii By journals.iucr.org Published On :: Full Article text
si Crystal structure of bis(1-ethyl-1H-imidazole-κN3)(meso-tetramesitylporphyrinato-κ4N,N',N'',N''')iron(III) perchlorate chlorobenzene sesquisolvate By scripts.iucr.org Published On :: 2019-05-31 In the complex cation of title compound, [Fe(C56H52N4)(C5H8N2)2]ClO4·1.5C6H5Cl, the ironIII atom is coordinated in a distorted octahedral manner by four pyrrole N atoms of the porphyrin ring system in the equatorial plane, and by two N atoms of the 1-ethylimidazole ligands in the axial sites. A disordered perchlorate anion and one and a half chlorobenzene solvent molecules are also present. The cationic complex exhibits a highly ruffled porphyrin core. The average Fe—Np (Np is a porphyrin N atom) bond length is 1.988 (5), and the axial Fe—NIm (NIm is an imidazole N atom) bond lengths are 1.962 (3) and 1.976 (3) Å. The two 1-ethylimidazole ligands are inclined to each other by a dihedral angle of 68.62 (16)°. The dihedral angles between the 1-ethylimidazole planes and the planes of the closest Fe—Np vector are 28.52 (18) and 43.57 (13)°. Intermolecular C—H⋯Cl interactions are observed. Full Article text
si Iodo(triphenyl)silane By scripts.iucr.org Published On :: 2019-07-09 The molecular structure of the title compound, C18H15ISi, which crystallizes in the space group C2/c, does not exhibit any unusual features. Two weak C—H⋯π interactions may help to consolidate the packing. The present structure is not isostructural with the known Ph3SiX (X = F, Cl or Br) compounds. Full Article text
si Di-μ-acetato-bis{[3-benzyl-1-(2,4,6-trimethylphenyl)imidazol-2-ylidene]silver(I)} By scripts.iucr.org Published On :: 2019-07-30 The title compound, [Ag2(C2H3O2)2(C19H20N2)2] (2), was readily synthesized by treatment of 3-benzyl-1-(2,4,6-trimethylphenyl)imidazolium chloride with silver acetate. The solution structure of the complex was analyzed by NMR spectroscopy, while the solid-state structure was confirmed by single-crystal X-ray diffraction studies. Compound 2 crystallizes in the triclinic space group Poverline{1}, with a silver-to-carbene bond length (Ag—CNHC) of 2.084 (3) Å. The molecule resides on an inversion center, so that only half of the molecule is crystallographically unique. The planes defined by the two imidazole rings are parallel to each other, but not coplanar [interplanar distance is 0.662 (19) Å]. The dihedral angles between the imidazole ring and the benzyl and mesityl rings are 77.87 (12) and 72.86 (11)°, respectively. The crystal structure features π–π stacking interactions between the benzylic groups of inversion-related (−x + 1, −y + 1, −z + 1) molecules and C—H⋯π interactions. Full Article text
si Synthesis and crystal structure of [Cs([2.2.2]crypt)]2[Mo(CO)5] By scripts.iucr.org Published On :: 2019-09-12 Reduction of the heteroleptic metal carbonyl complex Mo(CO)3(η5-Cp)H with the metallic salt Cs5Bi4 in the presence of [2.2.2]crypt (= 4,7,13,16,21,24-hexaoxa-1,10-diazabicyclo[8.8.8]hexacosane) in liquid ammonia led to single crystals of bis[(4,7,13,16,21,24-hexaoxa-1,10-diazabicyclo[8.8.8]hexacosane)caesium] pentacarbonylmolybdate, [Cs(C18H36N2O6)]2[Mo(CO)5] or [Cs([2.2.2]crypt)]2[Mo(CO)5]. The twofold negatively charged anionic complex corresponds to the 18 valence electron rule. It consists of an Mo atom coordinated by five carbonyl ligands in a shape intermediate between trigonal–bipyramidal and square-pyramidal. The Mo—C distances range from 1.961 (3) to 2.017 (3) Å, and the C≡O distances from 1.164 (3) to 1.180 (4) Å. Full Article text
si 1,1',3,3'-Tetramesitylquinobis(imidazole)-2,2'-dithione By scripts.iucr.org Published On :: 2019-09-27 The solid-state structural analysis of the title compound [systematic name: 5,11-disulfanylidene-4,6,10,12-tetrakis(2,4,6-trimethylphenyl)-4,6,10,12-tetraazatricyclo[7.3.0.03,7]dodeca-1(9),3(7)-diene-2,8-dione], C44H44N4O2S2 [+solvent], reveals that the molecule crystallizes in a highly symmetric cubic space group so that one quarter of the molecule is crystallographically unique, the molecule lying on special positions (two mirror planes, two twofold axes and a center of inversion). The crystal structure exhibits large cavities of 193 Å3 accounting for 7.3% of the total unit-cell volume. These cavities contain residual density peaks but it was not possible to unambiguously identify the solvent therein. The contribution of the disordered solvent molecules to the scattering was removed using a solvent mask and is not included in the reported molecular weight. No classical hydrogen bonds are observed between the main molecules. Full Article text
si Bis[2-(dimethylamino-κN)-α,α-diphenylbenzenemethanolato-κO](tetrahydrofuran-κO)magnesium(II) By scripts.iucr.org Published On :: 2019-10-31 The title magnesium complex, [Mg(C21H20NO2)2(C4H8O)]n, exhibits two N,O-bidentate 2-(dimethylamino)-α,α-diphenylbenzenemethanolate ligands, forming two six-membered chelate rings. The distorted square-pyramidal coordination sphere of the MgII atom is completed by the O atom of a tetrahydrofuran ligand, with its O atom in the apical position. The O and N atoms are in a mutual trans arrangement. Except for two C—H⋯π interactions, no significant intermolecular interactions are observed in the crystal. Full Article text
si Rubidium tetrafluoridobromate(III): redetermination of the crystal structure from single-crystal X-ray diffraction data By scripts.iucr.org Published On :: 2019-11-29 Single crystals of rubidium tetrafluoridobromate(III), RbBrF4, were grown by melting and recrystallizing RbBrF4 from its melt. This is the first determination of the crystal structure of RbBrF4 using single-crystal X-ray diffraction data. We confirmed that the structure contains square-planar [BrF4]− anions and rubidium cations that are coordinated by F atoms in a square-antiprismatic manner. The compound crystallizes in the KBrF4 structure type. Atomic coordinates and bond lengths and angles were determined with higher precision than in a previous report based on powder X-ray diffraction data [Ivlev et al. (2015). Z. Anorg. Allg. Chem. 641, 2593–2598]. Full Article text
si Redetermination of the crystal structure of caesium tetrafluoridobromate(III) from single-crystal X-ray diffraction data By scripts.iucr.org Published On :: 2020-01-31 Caesium tetrafluoridobromate(III), CsBrF4, was crystallized in form of small blocks by melting and recrystallization. The crystal structure of CsBrF4 was redetermined from single-crystal X-ray diffraction data. In comparison with a previous study based on powder X-ray diffraction data [Ivlev et al. (2013). Z. Anorg. Allg. Chem. 639, 2846–2850], bond lengths and angles were determined with higher precision, and all atoms were refined with anisotropic displacement parameters. It was confirmed that the structure of CsBrF4 contains two square-planar [BrF4]− anions each with point group symmetry mmm, and a caesium cation (site symmetry mm2) that is coordinated by twelve fluorine atoms, forming an anticuboctahedron. CsBrF4 is isotypic with CsAuF4. Full Article text
si Dicaesium tetramagnesium pentakis(carbonate) decahydrate, Cs2Mg4(CO3)5·10H2O By scripts.iucr.org Published On :: 2020-02-11 The title carbonate hydrate, Cs2Mg4(CO3)5·10H2O, was crystallized at room temperature out of aqueous solutions containing caesium bicarbonate and magnesium nitrate. Its monoclinic crystal structure (P21/n) consists of double chains of composition 1∞[Mg(H2O)2/1(CO3)3/3], isolated [Mg(H2O)(CO3)2]2– units, two crystallographically distinct Cs+ ions and a free water molecule. The crystal under investigation was twinned by reticular pseudomerohedry. Full Article text