Science for Environment Policy
Earth Observation’s Potential for the EU Environment

http://ec.europa.eu/environment/integration/research/newsalert/pdf/FB6.pdf

The official Kickoff meeting of the Building the European Biodiversity Observation Network (EU BON) project, organized by the Museum für Naturkunde, Berlin, took place on 13-15 February 2013 to formally mark the beginning of the project and to set goals and objectives for the future. Among the hottest issues discussed was the integration of EU BON's framework with the Global Earth Biodiversity Observation Network project GEO BON and the Global Earth Observation System of Systems (GEOSS). Another intention set for the future is the enhanced communication and synchronization between the various partners and work packages.

The main objective set for EU BON is to facilitate with its contributions, and thus build a substantial part of GEO BON. EU BON Advisory Board, comprising ten leading experts in data management, biodiversity conservation and earth observation realms has been set up. Dr. Wouter Los - Chairman of the Expert centre for Taxonomic Identification (ETI), and 2nd Vice Chair of the Global Biodiversity Information Facility Governing Board (GBIF) was elected as a chair of the EU BON Advisory Board. It has been decided, with the directions and help of the EU BON's Advisory Board, to achieve that a substantial amount of work should be done towards a more comprehensive vision of the relationship between the two projects and the place EU BON takes as a major contributor.

Another aim delineated is working towards collaboration between the currently fragmented biodiversity data sources in Europe in an attempt to create an integrated network and framework for the benefit of the project objective itself, and GEO BON eventually. Dialogue and association with similar or relevant biodiversity projects and initiatives, on European and Global levels, are also encouraged. Organizing a conference is on the project's to do list.

Enhanced communication between the different partners and work packages has been outlined as the engine for achieving of the projects main objectives. A second official meeting has been already assigned for 2014 to measure the progress of EU BON and to set further goals. Meanwhile partners are already organizing workshops to work towards reflecting the directions for development currently set.

A new "LinkOut" feature introduced by the National Center for Biotechnology Information (NCBI) NCBI’s allows the easy linking to content on PubMed and GenBank.  Dryad has already introduced the feature benefitting from easy and fast linking of associated content to the two resources.

PubMed and GenBank, from the National Center for Biotechnology Information (NCBI), are hugely popular resources for searching and retrieving article abstracts and nucleotide sequence data, respectively.  PubMed indexes the vast majority of the biomedical literature, and deposition of nucleotide sequences in GenBank or one of the other INSDC databases is a near universal requirement for publication in a scientific journal. LinkOut allows the data from an article to be distributed among repositories without compromising its discoverability.

Dryad, intends to expand on this feature in a couple of ways. First, it is planned to make Dryad content searchable via the PubMed and GenBank identifiers, which because of their wide use will provide a convenient gateway for other biomedical databases to link out to Dryad.  Second, open web standards will be used to expose relationships between content in Dryad and other repositories, not just NCBI.

Original source: Dryad news and views

On March 18 2013 the BHL-Europe portal has gone officially live. The Biodiversity heritage library for Europe project began in 2009 and joins noteworthy European museum and botanical gardens, including some in the USA as well. The primary goal of the project was to create an indexed archival system for digitized scientific literature, and free access to this literature via a multifunctional portal (www.bhl-europe.eu).
The portal makes available 6,149 books containing one million pages from 92 content providers at the moment, but this is just the initial offering. New material is added every day, and the growth is projected to increase over time. The BHL-Europe portal (and other international sources) is linked to the Biodiversity Library Exhibition  platform, which publishes selected literature in the form of interesting themes, information and an attractive design. Thanks to the specific presentation of literature and interesting scientific items, the platform has significant educational potential.

You can access the BHL-Europe portal here: www.bhl-europe.eu
Read more about the portal on the official BHL blog:  http://bhleurope.blogspot.cz/2013/03/bhl-europe-is-finally-officially-live.html

The Research Data Alliance (RDA) has been recently launched. Its First Plenary took place between 18-20 March, 2013 in Gothenburg, Sweden. The hot topic of the Plenary was the RDA vision towards open access data without barriers. The 3 days of meetings and working sessions brought the research data community together to contribute and set milestones for the future work of the RDA towards open access data-driven innovation. 

Over the last decade, significant investments have been made  all over the globe
for developing scientific  data infrastructures to support the work of research communities and improving shared access to data.  There is a  common understanding that solutions must be global and that the development of an integrated and interoperable data domain can only be achieved through increased global cooperation.

As "big data" emerges as an international priority, the Research Data Alliance (RDA) is a newly formed organization whose goal is to accelerate data-driven innovation world-wide through research data sharing and exchange.

At its first Plenary, the RDA was launched by sponsors from the European Commission, the U. S. Government and the Australian Government and leaders in the data community. The Plenary was used as a working meeting to accelerate discussion, Working and Interest Group interaction, and data community development.

ICSU-WDS Data Publication Charter: http://www.icsu-wds.org/working-groups/data-publication

Join the online community of EU BON and create buzz around the project. Take full advantage of our social network channels to interact with stakeholders and contribute to the EU BON discussion. Get an easy access and the latest updates on news and events around the project. You are a click away from making a difference to the project’s visibility.

Like, follow or join EU BON Social Media and get involved in the community now!

One year of experience and perspectives for the future from Pensoft Publishers and GBIF

In 2012 GBIF and Pensoft pioneered a workflow between the GBIF’s Integrated Publishing Toolkit (IPT) and Pensoft’s journals ZooKeys, PhytoKeys, MycoKeys, Nature Conservation, etc. to automatically export metadata into the form of a data paper manuscript, based on the Ecological Metadata Language (EML). One year on they share their experience and perspectives for the future of data publishing.

In its essence, a Data Paper is a scholarly journal publication whose primary purpose is to describe a dataset or a group of datasets, rather than to report a research investigation. As such, it contains facts about data, not hypotheses and arguments in support of the data, as found in a conventional research article. The future of data publishing according to Pensoft Publishers and GBIF, lies in the elaborating of formats for descriptions of various kinds of data (ecological, morphological, genomic, environmental, etc.), as well as in linking to various platforms (GBIF, Scratchpads, Dryad, EDIT, CBOL, etc.).

More about the collaboration and experience of Pensoft Publishers and GBIF learn from their joint poster available here.

The first meeting of Work Package 5 (EU BON testing and validation of concepts, tools, and services) was held between 2^nd and 4^th April, 2013 in the Doñana Biological Station, in Spain. 23 people from 10 different institutions (7 of the EU BON consortium) worked towards building a draft on Principles and Guidelines for establishing and operating EU BON test sites.

During the meeting the members agreed on starting documenting each of the sites, using a common format to be decided in May on the Informatics Task Force meeting of WP2 (Data integration and interoperability) in Norway. A data inventory will also be built in each of the sites, adding monitoring protocols in stepwise fashion.

In addition the meeting served to get a better view of the variety of Ecosystems in Doñana as well as the monitoring protocols that are being conducted in this area. 

The Helmholtz Centre for Environmental Research – UFZ is now offering a position for Quantitative Ecologist (Postdoc) in their Department of Conservation Biology. The position is open to both male and female applicants and it runs for 42 months, starting latest on 01.08.2013 in Leipzig, Germany. Salary will be according to the appropriate civil service level TVÖD, salary group 13.

The successful candidate will be focusing on optimizing monitoring designs at different scales under field constraints and assessinguncertainty in biodiversity trend analyses. He/She will have a PhD in an ecological discipline relevant for the research topic (e.g. population biology), excellent statistical and computing skills, a distinguished publication record, experience in international cooperation and strong interest both in theoretical and applied biodiversity conservation. Fluency in English in speech and writing is essential, some knowledge of German is of advantage.

The newest newsletter of the BioVel project is now available, offering a range of biodiversity related news, including brief coverage of the EU BON Kick-off and International Symposium Workshop in February, 2013. Among the other stories covered are:

•  Letter from Alex Hardisty, Project Coordinator
• Running Workflows Just Got a Whole Lot Simpler
• Friends of BioVeL: Friendships and collaborations are also blooming! (featuring news about: LifeWatch-BioVeL cooperation;; i4Life project; Micro B3 and GENSC are now friends of BioVeL.

The newsletter also contains information about the upcoming workflows and research within the project, as well about events planned for the future.

To read the article and find out more about the news stories covered click here.

A new article "A decadal view of biodiversity informatics: challenges and priorities"  published by BMC Ecology focuses on the challenges and perspectives for biodiversity informatics after a decade of development. The authors Alex Hardisty and Dave Roberts alongside 77 contributions from the biodiversity informatics community share experience and set future directions of biodiversity informatics as a tool for addressing conservation and ecological issues.

Biodiversity informatics plays a central enabling role in the research community's efforts to address scientific conservation and sustainability issues. This community consultation paper positions the role of biodiversity informatics, for the next decade, presenting the actions needed to link the various biodiversity infrastructures invisibly and to facilitate understanding that can support both business and policy-makers. The community considers the goal in biodiversity informatics to be full integration of the biodiversity research community, including citizens’ science, through a commonly-shared, sustainable e-infrastructure across all sub-disciplines that reliably serves science and society alike.

The full text of the article can be accessed here.

A main obstacle to reach the 2010 biodiversity goals and to implement the European Biodiversity Strategy is lacking integration of biodiversity aspects into political, economic, and management decisions in different sectors mainly due to knowledge gaps. EU BON will provide access to sound data sources and scientific knowledge that is reliable, relevant, up-todate, and publicly available. Europe maintains substantial capacities to generate and manage such knowledge and to provide data relevant to assessing and managing our biological resources. These capacities concern research and technology development, tools for information management and infrastructure, and procedures for the development and implementation of well-informed environmental policies. 

In order to meet the demands of the main political stakeholders in the EU, in this workshop an overview of the project will be given and first results will be shown summarized in the first show case which is dealing with datasets in relation to political targets and indicators. In addition, the idea how the science–policy/management interface can function for example via the planned European Biodiversity Portal will be presented and the requirements for policy (political administration) discussed.

Results of this first stakeholder round table will be documented and passed back to the project in order to increase its relevance. Next stakeholder round tables can be used to evaluate the progress of the project with regard to serving the demands of EC, EEA, GEO BON, IPBES and other stakeholders.

November 19-22, 2013 Alexander Technological Educational Institute of Thessaloniki, Greece

Continuing the successful mission of previous MTSR Conferences (MTSR'05, MTSR'07, MTSR'09, MTSR'10, MTSR'11 and MTSR’12), the seventh International Conference on Metadata and Semantics Research (MTSR'13) aims to bring together scholars and practitioners that share a common interest in the interdisciplinary field of metadata, linked data and ontologies. Participants will share novel knowledge and best practice in the implementation of these semantic technologies across diverse types of Information Environments and applications. These include Cultural Informatics; Open Access Repositories & Digital Libraries; E-learning applications; Search Engine Optimisation & Information Retrieval; Research Information Systems and Infrastructures; e-Science and e-Social Science applications; Agriculture, Food and Environment; Bio-Health & Medical Information Systems.

The "Environmental research: Experiences on best practices towards Horizon 2020" conference will be held the 30th of May 2013 in Brussels at the Museum of Natural Sciences.  Organizers of the event are the APRE (Agency for the Promotion of European Research), and the ENVIMPACT consortium.

The event will gather European Commission representatives,  researchers, FP7 project's participants, governmental, academic and industrial stakeholders of the Central East European countries with the aim of presenting the current and future tools and trends for dissemination and exploitation of R&D results with a special focus on the thematic areas of research in air pollution, chemical pollution and environmental technologies, especially in the Central-Eastern European (CEE) countries.

The agenda of the conference and the press release are downloadable at the link: http://download.apre.it/envimpact_presskit1.zip

The registration is free, please register at http://www.envimpact.eu/index.cfm?action=article&publication_id=922

ENVIMPACT project has been launched on 1st January 2011. This initiative is funded by the European Commission under FP7, DG Research and Innovation, with the objectives to improve the current communication  and dissemination of environmental research results deriving from Central-Eastern European (CEE) countries.

The data repository invites community input on the future of data archiving at upcoming membership meeting

Dryad, a repository for data underlying the international scientific and medical literature, works with a variety of journals, societies and publishers to archive research data at the time of publication.  The project began in 2009 and has published more than 3,000 data packages.  In 2012, Dryad incorporated as a nonprofit organization with the mission to make scientific and medical research data permanently available to all researchers and educators free-of-charge without barriers to reuse.
For the past four years, Dryad has worked with its stakeholders to develop a sustainability plan to realize this vision.  Central to the sustainability plan is a one-time submission fee that will offset the actual costs of preserving data indefinitely. A variety of pricing plans are available for journals and other organizations such societies, funders and libraries to purchase discounted submission fees on behalf of their researchers.  For data not covered by a pricing plan, the researcher will be asked to pay upon submission, with waivers provided to researchers from World Bank low and lower-middle income economies. Submission fees will apply to all new submissions starting September 2013.  Dryad will also be supported in part by its membership, by grants for research and innovation, and by donors. Membership in Dryad is open to any organization that supports research and education.  Dryad is pleased to include Pensoft Publishers among its Charter Members.
The Dryad Membership meeting, to be held in Oxford, UK on Friday, May 24 is open to members, prospective members, researchers and other interested parties.  Attendees will hear about recent and upcoming developments in the repository and the nonprofit organization. In addition, there will be an Emerging Issues Forum with presentations from the community about future directions for Dryad, its members, and partner journals, including models for the technical and peer review of data, ideas for promoting the adoption of data citations, measuring data reuse, funder perspectives on the use of research grants for data management costs and the relevance of larger data networks.  
Dryad’s Membership Meeting is part of a series of free public events in Oxford spotlighting trends in scholarly communication with an emphasis on research data, including a Symposium on the Now and Future of Data Publication on Wednesday, May 22nd and an ORCID Outreach Meeting with a special joint Dryad-ORCID Symposium on Research Attribution on Thursday, May 23rd. Registration for these events closes on May 13th. Remote attendance will be available for those unable to attend in person.

For more information about submitting data, becoming a member or the sustainability plan, please visit http://datadryad.org. The website also offers an Ideas Forum where people can make their voice heard by suggesting and voting for new features and offering comments.

CONTACT:
Laura Wendell, Executive Director
lwendell@datadrayd.org
+1-919-668-4005 or +1-919-423-3889

Research in Nature Climate Change uses data on 50,000 common plants and animals to predict worldwide range losses without urgent action to limit emissions

Climate change could dramatically reduce the geographic ranges of thousands of common plant and animal species during this century, according to research using data made freely available online through GBIF.
The information on the current location of common species of plants, mammals, birds, reptiles and amphibians was taken from around 170 million individual data records published freely online through GBIF by some 200 different institutions around the world. The records include museum specimens, data from scientific expeditions and the observations of thousands of volunteer ‘citizen scientists’.
One of the co-authors of the study, Jeff Price of the University of East Anglia’s School of Environmental Sciences, United Kingdom, said: "Without free and open access to massive amounts of data such as those made available online through GBIF, no individual researcher is able to contact every country, every museum, every scientist holding the data and pull it all together. So this research would not be possible without GBIF and its global community of researchers and volunteers who make their data freely available."
The lead author of the study, Dr Rachel Warren, also from UEA’s School of Environmental Sciences and the Tyndall Centre, said: "While there has been much research on the effect of climate change on rare and endangered species, little has been known about how an increase in global temperature will affect more common species."Our research predicts that climate change will greatly reduce the diversity of even very common species found in most parts of the world. This loss of global-scale biodiversity would significantly impoverish the biosphere and the ecosystem services it provides. The good news is that our research provides crucial new evidence of how swift action to reduce CO2 and other greenhouse gases can prevent the biodiversity loss by reducing the amount of global warming to 2 degrees Celsius rather than 4 degrees. This would also buy time – up to four decades - for plants and animals to adapt to the remaining 2 degrees of climate change."

The San Francisco Declaration on Research Assessment (DORA) was initiated by the American Society for Cell Biology (ASCB) together with a group of editors and publishers of scholarly journals after a meeting in  December 2012 during the ASCB Annual Meeting in San Francisco. The document recognizes the need to improve the ways in which the outputs of scientific research are evaluated.

DORA puts into question the use of Journal Impact Factor as a main tool for assessment, and proposes the consideration of various other factors towards more sophisticated and meaningful approaches. DORA is a worldwide initiative covering all scholarly disciplines.

To read the whole declaration, please follow the link: http://am.ascb.org/dora/

The European Commission adopted a new strategy for encouraging the use of green infrastructure, and for ensuring that the enhancement of natural processes becomes a systematic part of spatial planning. Green Infrastructure is a tried and tested tool that uses nature to provide ecological, economic and social benefits. Instead of building flood protection infrastructure, for example, a green infrastructure solution would be to allow a natural wetland to absorb the excess water from heavy rain.

Green infrastructure is often cheaper and more durable than alternatives provided through conventional civil engineering. Biodiversity-rich parks, green spaces and fresh air corridors can for example mitigate the negative effects of summer heat waves. In addition to the health and environmental benefits, green infrastructure also brings multiple social benefits: it creates jobs and makes cities more appealing places to live and work. And it allows for wildlife to thrive, even in an urban context.

Environment Commissioner Janez Potočnik said: "Building green infrastructure is often a good investment for nature, for the economy and for jobs. We should provide society with solutions that work with nature instead of against it, where that makes economic and environmental sense."

More about the EC Green Infrastructure here: http://ec.europa.eu/environment/nature/ecosystems/index_en.htm

Science for Environment Policy features a policy brief explaining the biases around biodiversity databases in their latest issue 331, from 6 June 2013. "Biodiversity databases: language and location help explain biases" features a new study arguing that low numbers of English speakers, large distances from the database host and low security acting as key barriers to data collection and among the main reasons for the underrepresentation of some countries in biodiversity databases.

Source: Amano T., Sutherland W.J. (2013) Four barriers to the global understanding of biodiversity conservation: wealth, language, geographical location and security. Proceedings of the Royal Society B. 280: 20122649. doi: 10.1098/rspb.2012.2649

The first Informatics Workshop of the EU-FP7 funded project EU BON was held on 29-31 May 2013 in Trondheim, Norway. The meeting was hosted by the EU BON partner Norwegian Biodiversity Information Centre (NBIC). The aims were to highlight the link to infrastructures and processes like GEOSS or DataONE and to discuss the data standards and informatics architecture that will be followed by the EU BON project.

During the three-days of the workshop, the participants of the meeting discussed the important aspects regarding the informatics architecture and decided on the next steps to develop a new open-access platform for sharing biodiversity data and tools in order to advance the European biodiversity knowledge.  On the first day, the aim was to highlight the link of EU BON with GEOSS, GEO BON and other processes like DataONE to find synergies and to build on work that was conducted in these processes. On the second day, detailed discussion on the specific tasks of the workgroup took place. The afternoon session was split into 3 different tracks where issues like architectural design, review and guidelines for using data standards, the design of monitoring sites and the gap analysis of existing biodiversity data were analyzed and discussed.

It was agreed that a new platform is needed which should be built on existing solutions. Thus, the platform will use the technical solutions of the DataONE network that will be adjusted to the specific needs of the EU BON project. EU BON Partners will implement DataONE Member Nodes to start the process and a DataOne coordinating node may be established towards 2015. Furthermore, it was also decided to join and support the GEO BON Working Group pilot project on automating the data flows for the Essential Biodiversity Variables.

The first EU BON Stakeholder Round Table is now approaching. The workshop will take place in Brussels on 18 June 2013 and be hosted by the Leibniz Association. A main obstacle to reach the 2010 biodiversity goals and to implement the European Biodiversity Strategy is the lacking integration of biodiversity aspects into political, economic, and management decisions in different sectors mainly due to knowledge gaps. The aim of the 1-day workshop will be to identify existing gaps, determine current needs regarding biodiversity information and develop solutions to overcome the existing knowledge gaps within the EU BON project.

EU BON will provide access to biodiversity information that is reliable, relevant, up-to-date, and publicly available. In the first Stakeholder Round Table, the EU BON approach for establishing a European Biodiversity Observation Network will be outlined. Based on that introduction, existing approaches that compile biodiversity or biodiversity-relevant data and the possible synergies and possible contributions to EU BON will be discussed. Another important aspect of the meeting will be to highlight the link to policy and governments of the European Union and their specific needs regarding biodiversity information.

Results of this first stakeholder round table will be documented and passed back to the project in order to increase its relevance. Next stakeholder round tables can be used to evaluate the progress of the project with regard to serving the demands of EC, EEA, GEO BON, IPBES, JRC and other stakeholders.

The EUBrazilOpenBio project  announces two new training tools as a part of its e-training Programme aiming at educating and enabling current and potential users of EUBrazilOpenBio to unlock new knowledge and shape effective policy on biodiversity challenges. The new tools cover the following use cases: Ecological Niche Modeling and Cross-mapping.

The EUBrazilOpenBio anytime, anywhere eTraining tools are designed for researchers in the spheres of Biodiversity, Life science, Climate Change, application Developers as well as regulatory authorities and policy decision-makers.

EUBrazilOpenBio is focused on tackling the complexity of biodiversity science such as the diversity of multidisciplinary datasets spanning from climatology to earth sciences by integrating advanced computing resources with data sources across Europe and Brazil.

For more informationand to try out the new tools click here.

The first EU BON Stakeholder Round Table was held on 18 June 2013 at the Leibniz Association in Brussels, under the motto "Requirements for Policy".

Important topics regarding biodiversity information were discussed with political stakeholders and a variety of valuable recommendations were given for the future process of EU BON. Among the participants were members of the European policy, representatives of recent European biodiversity projects and EU BON members. At the round table, intensive discussions took place regarding what biodiversity policy needs, like which indicators and measurements are needed to answer burning policy questions. Suggestions were made to formalize Essential Biodiversity Variables (EBV’s) and Aichi targets. A future approach was set towards producing a guideline and timeline for indicators that should be established within EU BON.

The challenges of future research policy were also discussed and the collaboration of EU BON with the Group on Earth Observations (GEO) will be a substantial part of the continuous contributions to the global process. EU BON should also serve as a showcase for the European Commission in this respect. EU BON will also be responsible for answering crucial questions regarding data policy, e.g. how to establish a general repository for a long-lasting storage of data and how to handle ‘big data’. Another future task will be to integrate EU relevant projects and initiatives and their data portals, datasets and metadata.

At the round table it was also discussed how public stakeholders can be involved in the future, particularly citizen scientists, so that they could be integrated in EU BON and provide useful information for scientists and researchers.

Among the participants were representatives of major biodiversity stakeholders including Gilles Ollier, Jane Shiel and Sofie Vandewoestijne - European Commission, DG Research and Innovation; Anne Teller - European Commission, DG Environment;  Georgios Sarantakos - GEO Secretariat; Cigdem Adem - European Environment Agency; representatives of recent European biodiversity projects (FunDiv, BioFresh, STEP and INSPIRE) and EU BON members.

Presentations:

The Brazilian initiative PPBio (The Program for Research on Biodiversity) launches a new book based on over a decade of experience in implementing the biodiversity monitoring system RAPELD in the Brazilian Amazon. Richly illustrated and written in simple language, the book "Biodiversity and Integrated Environmental Monitoring" addresses the issues that led to the system development, covering topics such as the spatial organization and representation of biological diversity, environmental monitoring, and data management.

Monitoring of biodiversity is not merely an academic endeavor. Although scientific aspects such as representation of biodiversity and biodiversity data integration, management and preservation are of a great importance, it is also essential to think about the political context in which decisions will be made and how to incorporate political stakeholders and decision makers.

"As this important book makes clear questions about biodiversity are far from purely scientific. Biodiversity matters. Our needs to assess it embed in a complex of questions posed by managers, policy makers and those who live in or otherwise benefit from biodiversity.",  explains Dr Stuart L. Pimm in the preface of the book. "So how do we ensure that data collected now will be useful for purposes we cannot yet imagine at some unexpected time in the future? Or provide comparison to some other place that we might survey some day?"

Those and many more questions regarding biodiversity data management and policy involvement are discussed in the new book "Biodiversity and Integrated Environmental Monitoring".

The University of Cambridge invites for applications for a Research Associate to work on EU-BON, a major EU-funded research project seeking to improve the use of biodiversity data in public policy.

Applicants should have a PhD in a relevant social science or conservation science. Experience in both qualitative and quantitative analysis is desirable. Applicants should ideally have some first-hand experience of public policy processes and a willingness to travel within the European Union for research. Excellent organisational and communication skills will be essential in working as a successful part of this large, multi-partner and multinational team.

The researcher will carry out research on how biodiversity data is currently used in European policy making and will contribute to analysis of the opportunities to increase its effective provision and use. Research methods are likely to combine qualitative and quantitate analysis and to focus on the use of biodiversity data in public policy contexts. It is expected that some of the research will take place in Brussels. The researcher will have considerable freedom in defining the research project in discussion with Dr Doubleday and Prof Sutherland. In addition to carrying out research on the use of biodiversity data in European policy making, the researcher will support Cambridge's contribution to EU BON as a whole. This will involve contributing to other workpackages as and when required. More information about EU BON can be found here: http://www.eubon.eu

Fixed-term: The funds for this post are available for 36 months in the first instance.

Completed applications consisting of a CHRIS/6 (Parts I & III) (downloadable from http://www.admin.cam.ac.uk/offices/hr/forms/chris6/) a covering letter, and CV, should be sent to Danielle Feger, via email: geogrec@hermes.cam.ac.uk or sent to Research Administrator, Department of Geography, Downing Site, Cambridge, CB2 3EN

Please quote reference LC01355 on your application and in any correspondence about this vacancy.

Any enquiries concerning the position can be made to Dr Robert Doubleday, rob.doubleday@csap.cam.ac.uk

For more information about the position, please visit: http://www.jobs.cam.ac.uk/job/1611/

In this guest post Martin Sharman opens up a rich area of debate by arguing that as a policy concept, ecosystem services puts human wants first and foremost and undermines moral-aesthetic value arguments for conservation that are widely held in society. Martin was the policy offer responsible for biodiversity and ecosystems in the European Commission’s DG Research & Innovation up until his retirement last November. During his career he made an enormous contribution to biodiversity research and policy, including the initiation of the BioFresh project. The opinions expressed in this post are, of course, his own and are not intended to represent a position of either the Commission or BioFresh.

A "resource" is something that is useful to someone. A "natural resource" is something in the natural environment that a human can use to satisfy want or increase wellbeing.

To adopt this vocabulary is to adopt a forthright utilitarian view of the natural environment, and implicitly to accept that human benefit is the only good. Not only is human benefit the only good, but it is quantifiable – for if not, then we can never agree on what constitutes a resource, or who has the greater right to it. Thus someone who speaks of natural resources accepts, again implicitly, that happiness and wellbeing can be quantified. The vocabulary also requires that this quantified human benefit remains, if not constant, then comparable over cultures and generations.

More than this: the wellbeing of the "resource" is insignificant. It is only by setting concern for the wellbeing of the resource to zero that one can regard it as merely something to satisfy human want. Human benefit is the only good. This is the First Commandment; in the limpid words of the King James version of the bible, thou shalt have no other gods before me.

In this observation lies much of the moral argument against the concept of ecosystem services: just as oranges are not the only fruit, so humans are not the only species.

The concept of ecosystem services is one thing; the premise of its proponents is another. It is, in short, that conservation based on intrinsic value of biodiversity has failed to stop the loss of species, ecosystems, and the complex web of interactions between them. Since an ethical argument has failed, then we should try self-interest. By demonstrating that human wellbeing is increased by the services rendered by ecosystems, we can motivate people to protect the source of the service – biodiversity.

We know that conservation is not working because we continue to lose biodiversity. Oh yeah? This is the equivalent of me deciding that my accelerator is not working because my car is losing speed. Why is such a daft non-sequitur accepted by otherwise intelligent people? You immediately thought of many reasons my car might be losing speed – I have the brakes on, I’m going up a hill, I’ve run out of fuel, I’ve run into sand, I’ve hit an oncoming truck. The obvious reason that we are losing biodiversity is the memento mori that stares at us from our looking glass – biodiversity loss is the inevitable result of our debt-based economic system and our swelling population’s unsustainable demands on nature. We all know that. Why do we mutely accept the dangerously diversionary nonsense that "biodiversity is being lost because conservation is not working"?

Ecosystem services takes the utilitarian logic of natural resources one important step further. A "service" by definition benefits humans. If we are to protect services only if they benefit humans, then what happens to the useless ecosystems? Are they simply to be cemented over?

I recently heard a discussion in which one person said "most people are useless", meaning that they are surplus to requirement. The outrage that this provoked was spearheaded by someone saying that you can never prove that anyone is useless, because you can never know enough about their contribution to their social fabric. So does this mean that you can never show that an ecosystem is useless? If so that leaves the ecosystem services argument saying that because some ecosystems benefit humans, we have to protect every ecosystem.

Which may be the right answer, but why reach it by such objectionable means?

For those of us with a reverence of nature, the ecosystem services rhetoric and mindset are abhorrent, being fundamentally immoral and unethical. They take the most ecologically damaging invasive species in the history of life, and place it above all other species on Earth. They cast all other – voiceless – species in the role of consumables. This mindset might have worked for Homo habilis. It will not work for Homo sapiens.

Martin Sharman  for the BioFresh Blog: http://biofreshblog.com/2013/07/03/perspective-martin-sharman-on-ethics-and-the-ecosystem-services-paradigm/

The Group on Earth Observations Biodiversity Observation Network (GEO BON) is leading the development of a set of Essential Biodiversity Variables (EBVs), akin to the GCOS Essential Climate Variables (ECVs).

The recently published paper (Science 339, 18 January 2013) describing the EBV concept states that: "Reducing the rate of biodiversity loss and averting dangerous biodiversity change are international goals, reasserted by the Aichi Targets for 2020 by Parties to the United Nations (UN) Convention on Biological Diversity (CBD).… However, there is no global, harmonized observation system for delivering regular, timely data on biodiversity change." Read Full Paper and supplementary materials on EBVs here.

GEO BON partners are thus developing (and seeking consensus around) EBVs that could form the basis of monitoring programs worldwide. For more information on EBVs please click here.

GEO BON invites anyone who would like to get involved in EBV development, to take the EBV survey which will run till 31 August 2013. The survey will help us gauge how respondents feel about current candidate EBVs and provides respondents with the opportunity to make suggestions for new/alternative EBVs. Complete survey now!

Policy-makers and science and industry representatives are discussing how to make large amounts of Earth observation data accessible to a wider user community. To explore this idea, some 250 science, industry and policy-making representatives and national delegates from Europe, the US, Australia, China and Africa met at ESA’s ESRIN centre in Frascati, Italy last week for ESA’s first ‘Big Data from Space’ event.

Representatives from ESA and NASA opened the event together with the European Commission. European Commission Directorates-General for Enterprise and Industry, Research and Innovation and Communications Networks, Content and Technology, along with representatives from the European Environment Agency, the National Oceanic and Atmospheric Administration and the Open Geospatial Consortium acted as session chairs. 

Javier de la Torre, representing the EU BON partner Vizzuality gave a presentation 'Global Deforestation through Timeme: Big Data Meets Scalable Visualizations,' which included some of the work Vizzuality is doing toward the EUBON project.

The event concluded with a strong call by all parties for the ability to handle and use big Earth observing data. This could potentially open new opportunities for research and international cooperation schemes such as programmatic and industrial coordination.

In 2013, the University of Potsdam will host the 43rd Annual Meeting of the Ecological Society of Germany, Austria and Switzerland. The meeting (www.gfoe-2013.de) will take place from September 9 to 13, 2013 in Potsdam, Germany.

The guiding theme of the 43rd Annual Meeting is "Building bridges in ecology - linking systems, scales and disciplines".
Along the lines of this guiding theme, we will stimulate scientific discussions about all aspects in basic and applied ecological research contributing to better connect.

From 16^th to the 18^th of July, a European stakeholder consultation for the Intergovernmental Platform on Biodiversity & Ecosystem Services (IPBES) took place in Leipzig (Germany). The consultation was organized by three European Biodiversity Platforms: Network-Forum Biodiversity Research Germany (NeFo), the Belgian Biodiversity Platform, and the French Foundation for Research on Biodiversity (FRB) (further information on the conference: www.biodiversity.de/index.php/de/ipbes/nefo-aktivitaeten-zu-ipbes/workshops/pan-european-stakeholder-consultation).

IPBES will greatly influence future biodiversity policy and research, and EU BON is expected to provide a European contribution to IPBES. IPBES will be in particular of high interest, because it will need tools to integrate and analyse different data sources, to develop relevant infrastructure and to do assessments of state and trends of biodiversity at multiple scales.

EU BON was represented by several partners at the meeting and we acted as facilitators in the round-tables, gathered input for the project, participated in discussions and exchanged ideas with many representatives and colleagues. We provide you with a short summary of the meeting below.

The aims of the pan-European stakeholder consultation meeting in Leipzig were:

1. To reach out to stakeholders to inform people and institutes and to raise awareness of the dynamics in IPBES.
2. To discuss and obtain feedback on several IPBES-related documents that are currently being drafted. In their final form these documents will be submitted to the Panel for the IPBES 2 plenary session in 9-14 December 2013.

The meeting in Leipzig was organized around round table discussions of several draft documents of importance for stakeholders: the draft work programme, the stakeholder engagement strategy draft and the draft "Vision for pan-European IPBES support perspective". If you are interested these documents, currently for review, can be found here:  http://www.ipbes.net/intersessional-process/current-review-documents-ipbes2.html .

There were several opportunities for EU BON partners to flag the potential biodiversity data and analysis requirements for the future IPBES work program in separate discussions and to give recommendations as to what should be additionally integrated in the draft work programme.

We also brainstormed on a potential EU BON side event at the second IPBES meeting, which will be held in 9-14 December in Antalya, Turkey. Topics discussed by national delegates in that plenary will amongst other topics comprise: the first work programme, budget, stakeholder engagement, the position of observers, technical requirements and a list of thematic priorities for IPBES assessments.

Although the meeting was a success in terms of the number and diversity of participants, the consultation felt for many participants as a top down exercise. However, the importance of being involved at this stage was felt and the hope for stakeholder empowerment in the future was often voiced.

ANNOUNCEMENT: The June 2013 update of the FishBase (www.fishbase.org) and SeaLifeBase (www.sealifebase.org/) websites are now available online.

FishBase Stats to date: 32500 Species, 299700 Common names, 52500 Pictures, 48700 References, 2010 Collaborators, 700000 Visits/Month

SealifeBase stats to date: 125800 Species, 27200 Common names, 11100 Pictures, 17800 References, 250 Collaborators

At the Bioinformatics Horizon 2013 Conference (3 - 6 September 2013, Rome) a Memorandum of Understanding was signed between PESI and EU BON. Christoph Häuser, on behalf of EU BON and Yde de Jong on behalf of PESI (see picture below), signed the document to strengthen the cooperation and formalise the integrating efforts of the European species infrastructures.  

PESI is now a new associate partner of EU BON, a consortium with currently 30 partners from 18 countries. One of the common aims of EU BON and PESI will be to establish and sustain standard taxonomies for Europe.  EU BON will support the PESI backbone developments, including its components, with a focus on Fauna Europaea and Euro+Med. Besides analyzing current gaps, new ideas will be developed to trigger expert involvement and enhance the data management systems.

In a side-meeting at BIH 2013, some ideas were discussed with available EU BON and PESI partners. Important steps will be taken to secure the sustainability of databases and expertise networks combined with the development of technical innovations for users and stakeholders and to promote the implementation of PESI as a European (INSPIRE) standard. It will be also important to further integrate the huge expertise networks, outreach to PESI Focal Points and expand the geographical scope. Furthermore, it will be important to integrate additional data types and data-resources.

The Biodiversity Data Journal (BDJ) and the associated Pensoft Writing Tool (PWT), launched on 16th of September 2013, offer several innovations - some of them unique - at every stage of the publishing process. The workflow allows for authoring, peer-review and dissemination to take place within the same online, collaborative platform.

Open access to content and data is quickly becoming the prevailing model in academic publishing, resulting in part from changes to policies of governments and funding agencies and in part from scientist's desire to get their work more widely read and used. Open access benefits scientists with greater dissemination and citation of their work, and provides society as a whole access to the latest research.

To publish effectively in open access, it is not sufficient simply to provide PDF files online. It is crucial to put them under a reuse-friendly license and to implement technologies that allow machine-readable content and data to be harvested by computers that can collate small scattered data into a big pool. Analyses and modelling of community-owned big data are the only way to confront environmental challenges to society, such as climate change, ecosystems destruction, biodiversity loss and others.

Manuscripts are not submitted to BDJ in the usual way, as word processor files, but are written in the online, collaborative Pensoft Writing Tool (PWT), that provides a set of pre-defined, but flexible article templates. Authors may work on a manuscript and invite external contributors, such as mentors, potential reviewers, linguistic and copy editors, and colleagues, who may read and comment on the text before submission. When a manuscript is completed, it is submitted to the journal with a simple click of a button. The tool also allows automated import of manuscripts from data management platforms, such as Scratchpads.

"This is the first workflow ever to support the full life cycle of a manuscript, from initial drafting through submission, community peer-review, publication and dissemination within a single, online, collaborative platform. By publishing papers in all branches of biodiversity science, including novel article types, such as data papers and software descriptions, BDJ becomes a gateway for either large or small data into the emerging world of "big data", said Prof. Lyubomir Penev, managing director and founder of Pensoft Publishers.

BDJ shortens the distance between "narrative (text)" and "data" publishing. Many data types, such as species occurrences, checklists, measurements and others, are converted into text from spreadsheets into a human-readable format. Conversely text from an article can be downloaded as structured data or harvested by computers for further use.

A novel community-based peer-review provides the opportunity for a large number of specialists in the field to review a manuscript. Authors may also opt for an entirely public peer-review process. Reviewers may opt to be anonymous or to disclose their names. Editors no longer need to check different reviewers' and author's versions of a manuscript because all versions can be consolidated into a single online document, again at the click of a button.

"The Biodiversity Data Journal is not just a journal, not even a data journal in the conventional sense. It is a completely novel workflow and infrastructure to mobilise, review, publish, store, disseminate, make interoperable, collate and re-use data through the act of scholarly publishing!" concluded Dr Vincent Smith from the Natural History Museum in London, the journal's Editor-in-Chief.

The platform has been designed by Pensoft Publishers and was funded in part by the European Union's Seventh Framework Program (FP7) project ViBRANT.

Smith V, Georgiev T, Stoev P, Biserkov J, Miller J, Livermore L, Baker E, Mietchen D, Couvreur T, Mueller G, Dikow T, Helgen K, Frank J, Agosti D, Roberts D, Penev L (2013) Beyond dead trees: integrating the scientific process in the Biodiversity Data Journal. Biodiversity Data Journal 1: e995. DOI: 10.3897/BDJ.1.e995

Global Biodiversity Informatics Outlook sets out key steps to harness IT and open data to inform better decisions

Copenhagen, Denmark – A new initiative launched today (2 Oct) aims to coordinate global efforts and funding to deliver the best possible information about life on Earth, and our impacts upon it.

The Global Biodiversity Informatics Outlook sets out a framework to harness the immense power of information technology and an open data culture to gather unprecedented evidence about biodiversity and to inform better decisions.

The framework is outlined in a document and website entitled Delivering Biodiversity Knowledge in the Information Age, inviting policy makers, funders, researchers, informatics specialists, data holders and others to unite around four key focus areas where progress is needed.

The focus areas, each consisting of several specific components, are:

• Culture – promoting practices and infrastructure for sharing data, using common standards and persistent archives, backed up by strong policy incentives and a community of willing specialists;
• Data – addressing the need to transform all data about species, past and present, into usable and accessible digital formats; from historic collections and literature to citizen science observations, remote sensors and gene sequencing;
• Evidence – organizing and assessing data from all sources to provide clear, consistent views giving them context; including taxonomic organization, integrated occurrences in time and space, capturing information about species interactions, and improving data quality through collaborative curation; and
• Understanding – building models from recorded measurements and observations to support data-driven research and evidence-based planning, including predictive tools, better visualization and feedbacks to prioritize new data capture.

The document is being promoted through a number of upcoming events this month, including the Governing Board of the Global Biodiversity Information Facility and the Subsidiary Body on Scientific, Technical and Technological Advice of the Convention on Biological Diversity (CBD SBSTTA) where it forms part of the discussion on meeting global targets to end biodiversity loss.

The framework arose from the Global Biodiversity Informatics Conference which gathered around 100 experts in Copenhagen in July, 2012, to identify critical questions relating to biodiversity and tools needed answer them. Workshop leaders at that conference went on to draw up and author the current document.

The Global Biodiversity Informatics Outlook includes examples of projects and initiatives contributing to its objectives, and the accompanying website www.biodiversityinformatics.org invites feedback from others wishing to align their own activities to the framework.

A deck of slides for presentations about GBIO is available at http://www.slideshare.net/GBIF/global-biodiversity-informatics-outlook

The 2014 SCIENCE POLICY SYMPOSIUM to support the implementation of the 2020 Biodiversity strategy and the EU Water Framework Directive will be held between 29-30 Jan 2014 in the Museum of Natural Sciences (RBINS), Brussels. The symposium is jointly organised by the EU FP7 funded projects BioFresh and REFRESH.

Numerous EU biodiversity and water related policies have been designed to protect freshwater ecosystems and ensure their sustainable use. However, major challenges still persist in the implementation of these policies. Freshwater ecosystems support 10% of all animal species on Earth and provide a diverse array of functions and services that contribute to human well-being. In recent decades global freshwater biodiversity has declined at a greater rate compared to terrestrial and marine ecosystems.

The Science Policy Symposium for Freshwater Life is organised with the aim of bringing together policy makers and stakeholders from the water, energy and conservation sector, NGOs, the scientific community and selected experts to discuss challenges to implementing the 2020 Biodiversity strategy and the EU Water Framework Directive.

Contact: waterlives.commitee@freshwaterbiodiversity.eu

A correspondence item, published today, 10 Oct 2013, in Nature focuses on the upcoming calls for Horizon 2020 research funding. The European Commission has said that it would prefer bids from open, collaborative consortia rather than the competitive bids seen in previous funding programmes. The authors call for an effort to forge interdisciplinary links in biodiversity research, and ask readers to contribute to discussions on project ideas.

For more information read the full correspondence item in Nature: http://www.nature.com/nature/journal/v502/n7470/full/502171d.html

The Royal Museum for Central Africa (RMCA) in Tervuren (Belgium) is part of the FishBase Consortium and responsible for the information on the fresh- and brackish water fishes of Africa. Through an agreement with the Belgian Development Cooperation and as part of the FishBase programme, the RMCA has five grants available for a 3-month training programme in the use of FishBase and the taxonomy of African fishes.

The training includes three subsets:

1. A detailed explanation of FishBase in all its aspects;
2. A training in the taxonomy of African fishes; and
3. A case study based on data from FishBase or on taxa for which taxonomic problems have been encountered.

The main focus of the training is on fish biodiversity data and their integration into FishBase, and on how to use and contribute data to FishBase. The context of these contributions may vary and can also include the knowledge on common names, fish ecology, fisheries statistics, aquaculture and many other areas of fish biology.

After the training, the participants should be able to make their own contribution to fish biology and continue to work on FishBase. They are encouraged to teach their newly apprehended skills to new/local users, to help in completing the database and keeping it up to date, and to spread the use of FishBase as a source of information and a fisheries tool.

This course has been offered annually since 2005 and is held at the Royal Museum for Central Africa (Leuvensesteenweg 13, B-3080 Tervuren, Belgium).

To apply for traineeship and for more information, go to:
http://www.africamuseum.be/research/collaborations/training/group?set_language=en&cl=en

Please note that for 2014, this course will be given in French only.

Contact: Dimitri Geelhand de Merxem (dimitri.geelhand@africamuseum.be)

The Biodiversity Data Journal goes beyond the basics of the Gold Open Access

There are two main modes of open access publishing – Green Open Access, where the author has the right to provide free access to the article outside the publisher's web site in a repository or on his/her own website, and Gold Open Access, where articles are available for free download directly from the publisher on the day of publication.

Opening of content and data, however does not necessarily mean "easy to discover and re-use". The Biodiversity Data Journal proposed the term "Advanced Open Access" to describe an integrated, narrative (text) and data publishing model where the main goal is to make content "re-usable" and "interoperable" for both humans and computers.

To publish effectively in open access, it is not sufficient simply to provide PDF or HTML files online. It is crucial to put these under a reuse-friendly license and to implement technologies that allow machine-readable content and data to be harvested and collated into a big data pool.

The Advanced Open Access means:

• Free to read
• Free to re-use, revise, remix, redistribute
• Easy to discover and harvest
• Content automatically summarised by aggregators
• Data and narrative integrated to the widest extent possible
• Human- and computer-readable formats
• Community-based, pre- and post-publication peer-review
• Community ownership of data
• Free to publish or at low cost affordable by all

BDJ shortens the distance between "narrative" (text) and "data" publishing. Many data types, such as species occurrences, checklists, measurements and others, are converted into text from spreadsheets for better readability by humans. Conversely, text from an article can be downloaded as structured data or harvested by computers for further analysis.

"Open access is definitely one of the greatest steps in scientific communication comparable to the invention of the printing technology or the peer-review system. Great but not sufficient!" said Prof. Lyubomir Penev, founder of Pensoft Publishers and the Biodiversity Data Journal. "We need to switch the focus already from making content 'available for free download' to being discoverable and extractable. Such re-usability multiplies society's investment in science".

Additional information:

The Biodiversity Data Journal is designed by Pensoft Publishers and was funded in part by the European Union's Seventh Framework Program (FP7) project ViBRANT.

Source: Smith V, Georgiev T, Stoev P, Biserkov J, Miller J, Livermore L, Baker E, Mietchen D, Couvreur T, Mueller G, Dikow T, Helgen K, Frank J, Agosti D, Roberts D, Penev L (2013) Beyond dead trees: integrating the scientific process in the Biodiversity Data Journal. Biodiversity Data Journal 1: e995. DOI: 10.3897/BDJ.1.e995

Taxonomic descriptions, introduced by Linnaeus in 1735, are designed to allow scientists to tell one species from another. Now there is a new futuristic method for describing new species that goes far beyond the tradition. The new approach combines several techniques, including next generation molecular methods, barcoding, and novel computing and imaging technologies, that will test the model for big data collection, storage and management in biology. The study has just been published in the Biodiversity Data Journal.

While 13,494 new animal species were discovered by taxonomists in 2012, animal diversity on the planet continues to decline with unprecedented speed. Concerned with the rapid disappearance rates scientists have been forced towards a so called 'turbo taxonomy' approach, where rapid species description is needed to manage conservation.

While acknowledging the necessity of fast descriptions, the authors of the new study present the other 'extreme' for taxonomic description: "a new species of the future". An international team of scientists from Bulgaria, Croatia, China, UK, Denmark, France, Italy, Greece and Germany illustrated a holistic approach to the description of the new cave dwelling centipede species Eupolybothrus cavernicolus, recently discovered in a remote karst region of Croatia. The project was a collaboration between GigaScience, China National GeneBank, BGI-Shenzhen and Pensoft Publishers.

Eupolybothrus cavernicolus has become the first eukaryotic species for which, in addition to the traditional morphological description, scientists have provided a transcriptomic profile, DNA barcoding data, detailed anatomical X-ray microtomography (micro-CT), and a movie of the living specimen to document important traits of its behaviour. By employing micro-CT scanning in a new species, for the first time a high-resolution morphological and anatomical dataset is created - the 'cybertype' giving everyone virtual access to the specimen.

This, most data-rich species description, represents also the first biodiversity project that joins the ISA (Investigation-Study-Assay) Commons, that is an approach created by the genomic and molecular biology communities to store and describe different data types collected in the course of a multidisciplinary study.

"Communicating the results of next generation sequencing effectively requires the next generation of data publishing" says Prof. Lyubomir Penev, Managing director of Pensoft Publishers. "It is not sufficient just to collect 'big' data. The real challenge comes at the point when data should be managed, stored, handled, peer-reviewed, published and distributed in a way that allows for re-use in the coming big data world", concluded Prof. Penev.

"Next generation sequencing is moving beyond piecing together a species genetic blueprint to areas such as biodiversity research, with mass collections of species in "metabarcoding" surveys bringing genomics, monitoring of ecosystems and species-discovery closer together. This example attempts to integrate data from these different sources, and through curation in BGI and GigaScience's GigaDB database to make it interoperable and much more usable," says Dr Scott Edmunds from BGI and Executive Editor of GigaScience.

Additional information:

Pensoft and the Natural History Museum London have received financial support by the EU FP7 projects ViBRANT and pro-iBiosphere. The China National GeneBank (CNGB) and GigaScience teams have received support from the BGI. The DNA barcodes were obtained through the International Barcode of Life Project supported by grants from NSERC and from the government of Canada through Genome Canada and the Ontario Genomics Institute.

Original Sources:

Stoev P, Komerički A, Akkari N, Shanlin Liu, Xin Zhou, Weigand AM, Hostens J, Hunter CI, Edmunds SC, Porco D, Zapparoli M, Georgiev T, Mietchen D, Roberts D, Faulwetter S, Smith V, Penev L (2013) Eupolybothrus cavernicolus Komerički & Stoev sp. n. (Chilopoda: Lithobiomorpha: Lithobiidae): the first eukaryotic species description combining transcriptomic, DNA barcoding and micro-CT imaging data. Biodiversity Data Journal 1: e1013. DOI: 10.3897/BDJ.1.e1013

Edmunds SC, Hunter CI, Smith V, Stoev P, Penev L (2013) Biodiversity research in the "big data" era: GigaScience and Pensoft work together to publish the most data-rich species description. GigaScience 2:14 doi:10.1186/2047-217X-2-14

Watch the 3D cybertype video: http://www.youtube.com/watch?v=vqPuwKG8hE4&feature=em-upload_owner

By http://www.eea.europa.eu/

Grassland butterflies have declined dramatically between 1990 and 2011. This has been caused by intensifying agriculture and a failure to properly manage grassland ecosystems, according to a report from the European Environment Agency (EEA).

The latest issue of ZooKeys - no. 346 - has been automatically registered in ZooBank on its day of publication last Friday. This marks the successful deployment of an automated registration-to-publication pipeline for taxonomic names for animals. The innovative workflow was jointly funded by the EU FP7 funded project pro-iBiosphere and a U.S. National Science Foundation project to develop the Global Names Architecture (DBI-1062441).

The process of post-publication recording and indexing of species names has a long tradition, in some cases dating as far back as the middle of 19th century. But now in the 21st century with the advance of modern technologies and the opportunity to publish taxonomic novelties online, the process of post-publication recording brought into focus the concept of automated pre-publication registration.

Why is this important? The proportion of 'turbo-taxonomic' papers describing hundreds of new species increases. Registration of hundreds of new species is an issue, however it is even more important that the final publication data of the pre-registered names are reported back to ZooBank on the day of publication.

Launched as an open access peer reviewed journal in 2008, to coincide and adopt from inception the International Code of Zoological Nomenclature changes for electronic publications, ZooKeys was the first journal to provide a mandatory in-house registration in ZooBank. Since 2008, it has contributed about one third of all names currently registered in ZooBank. With the adoption of the automated ZooBank registration, ZooKeys continues its mission to set novel trends in biodiversity publishing.

Implementation of automated workflows and invention of XML-based tools will facilitate the process of publication and dissemination of biodiversity information. It will pave the way for unification and streamlining the registration process, even more to building the next-generation e-infrastructure for a common global taxon names registry. Within the pro-iBiosphere project and in cooperation with Plazi that have created the TaxPub XML schema, an automated registration workflow for plants has already been established between the International Plant Names Index (IPNI) and the PhytoKeys journal, to be applied soon also for fungi between Index Fungorum and the journal MycoKeys.

The Environmental Change Institute (ECI) in the University of Oxford is seeking to appoint a Research Assistant to join the existing research team on two EU funded research projects.

The role will require the development and application of methodologies for undertaking systematic literature reviews, quantitative analysis of model outputs, contribution to the writing of research papers, organisation of workshops and large meetings, and the performance of other duties necessary for the successful completion of both the IMPRESSIONS and OPENNESS projects

You will have a Masters or equivalent in an environmental discipline and strong quantitative skills. You must have the ability to undertake systematic literature reviews and synthesise findings and assist in the management of large research projects. Excellent organisational and writing skills are essential.

This is a part-time (50% FTE) post and is available for 24 months.

The closing date for applications is 12.00 noon on Wednesday 18 December 2013.

You can find more information and apply here.

The Environmental Change Institute (ECI) in the University of Oxford is seeking to appoint a Postdoctoral Research Assistant to join the existing research team on two EU funded research projects: IMPRESSIONS and OPENNESS.

The role will require the development of a range of methodological and modelling approaches, including quantitative, qualitative and mixed techniques, to address a number of environmental science challenges in the contexts of operationalising ecosystem services and investigating cross-sectoral climate change impacts and vulnerabilities. The post provides the opportunity for a researcher with skills in programming, GIS and statistics to develop innovative solutions in research areas critical to ensuring the resilience of our future environment and to expand the modelling capability of the ECI team.

You will have a PhD in a discipline relevant to modelling or environmental sciences and a background in programming and modelling. You will have experience of using Geographical Information Systems and a strong grounding in statistics and/or operational research. Excellent communication skills both written and oral are essential. You will be self-motivated, with the ability to work independently.

This post is available for 24 months in the first instance.

The closing date for applications is 12.00 noon on Wednesday 18 December 2013. It is intended that interviews will be held during the week beginning 13 January 2014.

For more information and to apply for this position, click here.

The final EUBrazilOpenBio newsletter for November 2013 is now available. The  newsletter presents the final press release showcasing the main results of 2 year collaborative work, namely: the innovative, web-based working environment designed to serve biodiversity scenarios; the new version of the Catalogue of Life cross-mapping tool developed in the i4Life project; the provision of the Ecological Niche Modelling tool as a service through the openModeller extended web service, and its application in collaboration with BioVeL; the EUBrazilOpenBio Joint Action Plan.

This newsletter highlights:

• EUBrazilOpenBio Joint Action Plan - drawing on policy strategies, analysing  current progress in contributing to international targets and defining actions for future collaborative research. It defines common actions with the aim of contributing to relevant Aichi Targets in the years ahead.
• EGI federatec use case on ecology - Over the last two years, BioVeL and EUBrazilOpenBio have joined forces to make openModeller ready for cloud deployment. Work within the EGI Federated Cloud Task Force has led to considerable success in enabling the openModeller service on the EGI Federated Cloud.
• EUBrazilOpenBio results - EUBrazilOpenBio Technical developments, training materials and sessions, publications and papers, media spotlights and policy results all collected in one page.
• A vision from the Experts - "The Crossmapper itself is a great tool, and an ideal way to identify errors and updates". Dr Christina Flann is one of the experts providing their vision on EUBrazilOpenBio story.

You can find an online version of the final EUBrazilOpenBio newsletter here.